Thg1l (tRNA-histidine guanylyltransferase 1-like) - Rat Genome Database

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Gene: Thg1l (tRNA-histidine guanylyltransferase 1-like) Rattus norvegicus
Analyze
Symbol: Thg1l
Name: tRNA-histidine guanylyltransferase 1-like
RGD ID: 1359513
Description: Predicted to enable several functions, including guanyl-nucleotide exchange factor activity; magnesium ion binding activity; and purine ribonucleoside triphosphate binding activity. Predicted to be involved in several processes, including protein homotetramerization; stress-induced mitochondrial fusion; and tRNA modification. Predicted to be located in mitochondrion. Predicted to be part of transferase complex. Human ortholog(s) of this gene implicated in autosomal recessive spinocerebellar ataxia 28. Orthologous to human THG1L (tRNA-histidine guanylyltransferase 1 like); INTERACTS WITH (+)-schisandrin B; 2,3,7,8-tetrachlorodibenzodioxine; bisphenol A.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LOC303067; probable tRNA(His) guanylyltransferase; similar to hypothetical protein FLJ20546; tRNA-histidine guanylyltransferase 1-like (S. cerevisiae)
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81030,889,259 - 30,897,903 (-)NCBIGRCr8
mRatBN7.21030,387,929 - 30,396,579 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1030,387,940 - 30,396,687 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1035,116,353 - 35,123,762 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0103,654,794 - 3,662,203 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01030,090,540 - 30,097,946 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01031,043,647 - 31,052,092 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1031,043,688 - 31,052,102 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01030,866,222 - 30,873,429 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41031,087,575 - 31,094,986 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11031,088,625 - 31,096,035 (-)NCBI
Celera1029,843,158 - 29,850,569 (-)NCBICelera
Cytogenetic Map10q21NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
mitochondrion  (IEA,ISO)
transferase complex  (IEA,ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
Additional References at PubMed
PMID:21059936   PMID:21516116   PMID:21784897   PMID:25416956  


Genomics

Comparative Map Data
Thg1l
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81030,889,259 - 30,897,903 (-)NCBIGRCr8
mRatBN7.21030,387,929 - 30,396,579 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1030,387,940 - 30,396,687 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1035,116,353 - 35,123,762 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0103,654,794 - 3,662,203 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01030,090,540 - 30,097,946 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01031,043,647 - 31,052,092 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1031,043,688 - 31,052,102 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01030,866,222 - 30,873,429 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41031,087,575 - 31,094,986 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11031,088,625 - 31,096,035 (-)NCBI
Celera1029,843,158 - 29,850,569 (-)NCBICelera
Cytogenetic Map10q21NCBI
THG1L
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385157,731,420 - 157,741,449 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5157,731,420 - 157,741,449 (+)EnsemblGRCh38hg38GRCh38
GRCh375157,158,428 - 157,168,457 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 365157,090,901 - 157,099,350 (+)NCBINCBI36Build 36hg18NCBI36
Celera5153,184,922 - 153,193,373 (+)NCBICelera
Cytogenetic Map5q33.3NCBI
HuRef5152,246,932 - 152,255,383 (+)NCBIHuRef
CHM1_15156,591,041 - 156,599,478 (+)NCBICHM1_1
T2T-CHM13v2.05158,250,432 - 158,260,460 (+)NCBIT2T-CHM13v2.0
Thg1l
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391145,836,132 - 45,846,330 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1145,837,670 - 45,846,321 (-)EnsemblGRCm39 Ensembl
GRCm381145,945,305 - 45,955,503 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1145,946,843 - 45,955,494 (-)EnsemblGRCm38mm10GRCm38
MGSCv371145,761,656 - 45,768,996 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361145,790,266 - 45,798,926 (-)NCBIMGSCv36mm8
Celera1150,536,819 - 50,544,157 (-)NCBICelera
Cytogenetic Map11B1.1NCBI
cM Map1127.47NCBI
Thg1l
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540811,857,380 - 11,866,270 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540811,857,380 - 11,863,786 (+)NCBIChiLan1.0ChiLan1.0
THG1L
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24152,886,986 - 152,921,758 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15151,026,544 - 151,066,518 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05153,116,528 - 153,127,166 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15159,737,327 - 159,747,405 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5159,737,327 - 159,749,242 (+)Ensemblpanpan1.1panPan2
THG1L
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1452,548,481 - 52,587,582 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl452,549,741 - 52,561,754 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha452,439,674 - 52,478,767 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0452,983,177 - 53,022,284 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl452,984,143 - 53,085,752 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1452,810,671 - 52,849,772 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0452,916,953 - 52,956,106 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0453,434,716 - 53,473,821 (-)NCBIUU_Cfam_GSD_1.0
Thg1l
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213107,013,000 - 107,019,071 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365155,461,363 - 5,468,517 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365155,462,344 - 5,468,475 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
THG1L
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1665,602,641 - 65,610,592 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11665,602,637 - 65,610,619 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21671,454,638 - 71,462,777 (-)NCBISscrofa10.2Sscrofa10.2susScr3
THG1L
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12360,140,439 - 60,148,893 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2360,140,536 - 60,150,461 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603417,480,477 - 17,490,637 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Thg1l
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473331,730,882 - 31,739,377 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473331,732,247 - 31,739,150 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Thg1l
36 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:182
Count of miRNA genes:138
Interacting mature miRNAs:163
Transcripts:ENSRNOT00000007917
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
6893352Bw100Body weight QTL 1000.330.6body mass (VT:0001259)body weight (CMO:0000012)11590666560906665Rat
9589136Insul27Insulin level QTL 2710.460.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)101147401056474010Rat
631564Apr3Acute phase response QTL 33.9blood interleukin-6 amount (VT:0008595)plasma interleukin-6 level (CMO:0001927)101527595560275955Rat
1298069Bp168Blood pressure QTL 1685.5blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)102652195798003205Rat
724556Pur2Proteinuria QTL 25.5urine protein amount (VT:0005160)urine protein level (CMO:0000591)102242750090627625Rat
8662860Vetf10Vascular elastic tissue fragility QTL 10artery integrity trait (VT:0010639)number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562)10615418273453136Rat
2313066Bss63Bone structure and strength QTL 631.40.0001tibia strength trait (VT:1000284)bone polar moment of inertia (CMO:0001558)10538701450387014Rat
631554Bp133Blood pressure QTL 1330.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1074336463851208Rat
2313064Bmd71Bone mineral density QTL 710.90.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)10538701450387014Rat
61325Aia5Adjuvant induced arthritis QTL 50.01joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1023444813104060283Rat
70223Bp57Blood pressure QTL 575arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)10180676123Rat
1354587Kidm21Kidney mass QTL 213.3kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)101502851360430477Rat
6893350Bw99Body weight QTL 990.870.16body mass (VT:0001259)body weight (CMO:0000012)11590666560906665Rat
1578761Stresp21Stress response QTL 213.3thymus mass (VT:0004954)thymus wet weight (CMO:0000855)10637574651375746Rat
70224Eae3Experimental allergic encephalomyelitis QTL 34.1nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)102652195761345413Rat
2293680Bss40Bone structure and strength QTL 405.660.0001femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)10135225947Rat
2298544Neuinf9Neuroinflammation QTL 94.6nervous system integrity trait (VT:0010566)spinal cord complement component 1, q subcomponent, B chain mRNA level (CMO:0002126)10580199062146030Rat
2298480Eau7Experimental allergic uveoretinitis QTL 70.0049uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)102795762634490668Rat
10401803Kidm50Kidney mass QTL 50kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)1041834445418344Rat
2313081Bss64Bone structure and strength QTL 641.30.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)10538701450387014Rat
1554317Bmd4Bone mineral density QTL 49.40.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)101981604299406971Rat
1331791Cm31Cardiac mass QTL 313.84606heart mass (VT:0007028)heart wet weight (CMO:0000069)1029299504107211142Rat
1598852Anxrr19Anxiety related response QTL 195.07body movement coordination trait (VT:0005424)number of rearing movements in an experimental apparatus (CMO:0001752)101816784163167841Rat
2313087Bmd80Bone mineral density QTL 803.20.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)101960648364606483Rat
634327Hc4Hypercalciuria QTL 42.4urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)10138328221Rat
1581497Esta1Estrogen-induced thymic atrophy QTL 1thymus mass (VT:0004954)thymus wet weight (CMO:0000855)102132980561345413Rat
631531Iresp2Immunoglobin response QTL26.3blood immunoglobulin E amount (VT:0002492)serum immunoglobulin E level (CMO:0002101)102291826836400810Rat
2313095Bss62Bone structure and strength QTL 621.50.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)10538701450387014Rat
724527Bp148Blood pressure QTL 1480.0001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)102845313673453136Rat
631532Cm50Cardiac mass QTL 506.6heart mass (VT:0007028)calculated heart weight (CMO:0000073)101790711351786432Rat
1331762Rf40Renal function QTL 403.873kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)102929950464155584Rat
2300171Bmd58Bone mineral density QTL 584.90.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)102694462871944628Rat
7411611Foco17Food consumption QTL 1718.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)10142315980Rat
61354Pia10Pristane induced arthritis QTL 100.01joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1023444813104060283Rat
631267Cia20Collagen induced arthritis QTL 203.2joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1023444813104060283Rat
1600371Mcs21Mammary carcinoma susceptibility QTL 213mammary gland integrity trait (VT:0010552)mammary tumor growth rate (CMO:0000344)102887565052200160Rat
2301967Cm73Cardiac mass QTL 734.55heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)101448701189062041Rat
2303118Mamtr7Mammary tumor resistance QTL 70.003mammary gland integrity trait (VT:0010552)mammary tumor growth rate (CMO:0000344)109658275104670812Rat
631268Cia21Collagen induced arthritis QTL 213.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1014487011104060283Rat
9590268Scort13Serum corticosterone level QTL 133.260.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)101147401056474010Rat
2313104Bss61Bone structure and strength QTL 610.90.0001tibia area (VT:1000281)tibia midshaft cross-sectional area (CMO:0001717)10538701450387014Rat
61427Cia16Collagen induced arthritis QTL 163.2joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)10635789696121100Rat
9590310Scort19Serum corticosterone level QTL 196.30.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)101147401056474010Rat
10402859Bp381Blood pressure QTL 3810.002arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)102760646872606468Rat
2316949Gluco60Glucose level QTL 603.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1014487011107057807Rat
2292441Bp308Blood pressure QTL 308arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)102760646872606468Rat
2313055Bw96Body weight QTL 963.60.0001body mass (VT:0001259)body weight (CMO:0000012)101960648364606483Rat
631542Bp82Blood pressure QTL 826.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)102652195798952741Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31

Sequence


Ensembl Acc Id: ENSRNOT00000007917   ⟹   ENSRNOP00000007917
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1030,387,940 - 30,396,562 (-)Ensembl
Rnor_6.0 Ensembl1031,043,688 - 31,052,102 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000099031   ⟹   ENSRNOP00000078306
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1030,387,940 - 30,396,687 (-)Ensembl
RefSeq Acc Id: NM_001013966   ⟹   NP_001013988
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81030,890,492 - 30,897,903 (-)NCBI
mRatBN7.21030,389,167 - 30,396,579 (-)NCBI
Rnor_6.01031,044,885 - 31,052,092 (-)NCBI
Rnor_5.01030,866,222 - 30,873,429 (-)NCBI
RGSC_v3.41031,087,575 - 31,094,986 (-)RGD
Celera1029,843,158 - 29,850,569 (-)RGD
Sequence:
RefSeq Acc Id: XM_017597250   ⟹   XP_017452739
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81030,889,259 - 30,897,571 (-)NCBI
mRatBN7.21030,387,929 - 30,395,248 (-)NCBI
Rnor_6.01031,043,647 - 31,050,710 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017597251   ⟹   XP_017452740
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81030,889,259 - 30,897,571 (-)NCBI
mRatBN7.21030,387,929 - 30,395,251 (-)NCBI
Rnor_6.01031,043,647 - 31,050,713 (-)NCBI
Sequence:
RefSeq Acc Id: XM_063268968   ⟹   XP_063125038
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81030,889,259 - 30,897,571 (-)NCBI
RefSeq Acc Id: XM_063268969   ⟹   XP_063125039
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81030,889,259 - 30,897,587 (-)NCBI
RefSeq Acc Id: XM_063268970   ⟹   XP_063125040
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81030,889,259 - 30,897,588 (-)NCBI
RefSeq Acc Id: NP_001013988   ⟸   NM_001013966
- UniProtKB: Q5M965 (UniProtKB/Swiss-Prot),   A6HDQ4 (UniProtKB/TrEMBL),   A0A8L2Q363 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017452740   ⟸   XM_017597251
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_017452739   ⟸   XM_017597250
- Peptide Label: isoform X2
- Sequence:
Ensembl Acc Id: ENSRNOP00000007917   ⟸   ENSRNOT00000007917
Ensembl Acc Id: ENSRNOP00000078306   ⟸   ENSRNOT00000099031
RefSeq Acc Id: XP_063125040   ⟸   XM_063268970
- Peptide Label: isoform X1
- UniProtKB: A6HDQ5 (UniProtKB/TrEMBL),   A0A8I5ZLA0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063125039   ⟸   XM_063268969
- Peptide Label: isoform X1
- UniProtKB: A6HDQ5 (UniProtKB/TrEMBL),   A0A8I5ZLA0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063125038   ⟸   XM_063268968
- Peptide Label: isoform X1
- UniProtKB: A6HDQ5 (UniProtKB/TrEMBL),   A0A8I5ZLA0 (UniProtKB/TrEMBL)
Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q5M965-F1-model_v2 AlphaFold Q5M965 1-298 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13697122
Promoter ID:EPDNEW_R7647
Type:initiation region
Name:Thg1l_1
Description:tRNA-histidine guanylyltransferase 1-like
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01031,052,090 - 31,052,150EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1359513 AgrOrtholog
BioCyc Gene G2FUF-25381 BioCyc
Ensembl Genes ENSRNOG00000005539 Ensembl, UniProtKB/TrEMBL
  ENSRNOG00055018247 UniProtKB/Swiss-Prot
  ENSRNOG00060020188 UniProtKB/Swiss-Prot
  ENSRNOG00065001317 UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000007917.8 UniProtKB/TrEMBL
  ENSRNOT00000099031.1 UniProtKB/TrEMBL
  ENSRNOT00055030921 UniProtKB/Swiss-Prot
  ENSRNOT00060035007 UniProtKB/Swiss-Prot
  ENSRNOT00065001738 UniProtKB/Swiss-Prot
Gene3D-CATH 3.30.70.3000 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7310343 IMAGE-MGC_LOAD
InterPro Thg1_C_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  tRNAHis_GuaTrfase_cat UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  tRNAHis_GuaTrfase_Thg1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  tRNAHis_GuaTrfase_Thg1_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:303067 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGC_CLONE MGC:105704 IMAGE-MGC_LOAD
NCBI Gene 303067 ENTREZGENE
PANTHER PTHR12729 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TRNA(HIS) GUANYLYLTRANSFERASE-RELATED UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Thg1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Thg1C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Thg1l PhenoGen
PIRSF tRNAHis_guanylyltransferase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx ENSRNOG00000005539 RatGTEx
  ENSRNOG00055018247 RatGTEx
  ENSRNOG00060020188 RatGTEx
  ENSRNOG00065001317 RatGTEx
UniProt A0A8I5ZLA0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8L2Q363 ENTREZGENE, UniProtKB/TrEMBL
  A6HDQ4 ENTREZGENE, UniProtKB/TrEMBL
  A6HDQ5 ENTREZGENE, UniProtKB/TrEMBL
  Q5M965 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-10-07 Thg1l  tRNA-histidine guanylyltransferase 1-like  Thg1l  tRNA-histidine guanylyltransferase 1-like (S. cerevisiae)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-03-04 Thg1l  tRNA-histidine guanylyltransferase 1-like (S. cerevisiae)  LOC303067  similar to hypothetical protein FLJ20546  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-07-29 LOC303067  similar to hypothetical protein FLJ20546      Symbol and Name status set to provisional 70820 PROVISIONAL