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Gene: Pomgnt1 (protein O-linked mannose N-acetylglucosaminyltransferase 1 (beta 1,2-)) Rattus norvegicus

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Symbol:

Pomgnt1

Name:

protein O-linked mannose N-acetylglucosaminyltransferase 1 (beta 1,2-)

RGD ID:

1359396

Description:

Predicted to enable beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,3-N-acetylglucosaminyltransferase activity and manganese ion binding activity. Predicted to be involved in protein O-linked glycosylation via N-acetyl-galactosamine. Predicted to act upstream of or within several processes, including nervous system development; protein O-linked glycosylation via mannose; and protein glycosylation. Predicted to be located in membrane. Predicted to be active in Golgi membrane. Human ortholog(s) of this gene implicated in lissencephaly; muscular dystrophy (multiple); and retinitis pigmentosa 76. Orthologous to human POMGNT1 (protein O-linked mannose N-acetylglucosaminyltransferase 1 (beta 1,2-)); PARTICIPATES IN O-linked glycan biosynthetic pathway; INTERACTS WITH 2,4-dinitrotoluene; 3,4-methylenedioxymethamphetamine; 4-amino-2,6-dinitrotoluene.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

MGC94463; O-linked mannose beta1,2-N-acetylglucosaminyltransferase; protein O-linked-mannose beta-1,2-N-acetylglucosaminyltransferase 1

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	5	134,870,971 - 134,880,864 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	5	134,870,975 - 134,880,863 (+)	Ensembl				GRCr8
mRatBN7.2	5	129,634,274 - 129,644,150 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	129,634,294 - 129,644,149 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	5	132,250,551 - 132,260,368 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	5	134,005,138 - 134,014,956 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	5	134,027,575 - 134,037,392 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	5	135,007,343 - 135,017,220 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	135,007,343 - 135,017,218 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	5	138,791,235 - 138,801,112 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	5	136,429,379 - 136,439,254 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	5	128,162,654 - 128,172,461 (+)	NCBI		Celera
RGSC_v3.1	5	136,434,604 - 136,444,480 (+)	NCBI
Cytogenetic Map	5	q35	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autosomal recessive limb-girdle muscular dystrophy type 2O (ISO)

congenital muscular dystrophy (ISO)

congenital muscular dystrophy-dystroglycanopathy type A3 (ISO)

fundus dystrophy (ISO)

genetic disease (ISO)

Gliosis (ISO)

hydrocephalus (ISO)

lissencephaly (ISO)

muscular dystrophy (ISO)

muscular dystrophy-dystroglycanopathy (ISO)

muscular dystrophy-dystroglycanopathy type B1 (ISS)

muscular dystrophy-dystroglycanopathy type B3 (ISO)

Nervous System Malformations (ISO)

retinitis pigmentosa 1 (ISO)

retinitis pigmentosa 76 (ISO)

Walker-Warburg syndrome (ISO,ISS)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

17alpha-ethynylestradiol (ISO)

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

2,3,7,8-Tetrachlorodibenzofuran (ISO)

2,4-dinitrotoluene (EXP)

3,4-methylenedioxymethamphetamine (EXP,ISO)

4,4'-sulfonyldiphenol (ISO)

4-amino-2,6-dinitrotoluene (EXP)

acrylamide (ISO)

aflatoxin B1 (ISO)

atrazine (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP,ISO)

Butylbenzyl phthalate (EXP)

cadmium atom (ISO)

cadmium dichloride (ISO)

choline (ISO)

cisplatin (ISO)

cocaine (EXP)

copper(II) sulfate (ISO)

cyclosporin A (ISO)

Dibutyl phosphate (ISO)

epoxiconazole (ISO)

ethanol (ISO)

folic acid (ISO)

gentamycin (EXP)

L-methionine (ISO)

N-methyl-4-phenylpyridinium (EXP)

paracetamol (ISO)

phenobarbital (ISO)

tamoxifen (ISO)

thiram (ISO)

triptonide (ISO)

valproic acid (ISO)

zoledronic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

basement membrane organization (IEA,ISO)

biological_process (ND)

brain development (IEA,ISO)

dentate gyrus development (IEA,ISO)

gene expression (IEA,ISO)

glycoprotein biosynthetic process (ISO)

localization of cell (IEA,ISO)

myelination (IEA,ISO)

protein O-linked glycosylation (IEA,ISO,ISS)

protein O-linked glycosylation via mannose (IEA,ISO)

protein O-linked glycosylation via N-acetyl-galactosamine (IBA,IEA,ISO,ISS)

reactive gliosis (IEA,ISO)

sensory perception of sound (IEA,ISO)

Cellular Component

Golgi membrane (IBA,IEA,ISO,ISS)

membrane (IEA,ISO,ISS)

Molecular Function

acetylglucosaminyltransferase activity (IEA,ISO,ISS)

alpha-1,3-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity (IEA)

beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,3-N-acetylglucosaminyltransferase activity (IBA,IEA,ISO)

carbohydrate binding (IEA)

glycosyltransferase activity (IEA)

manganese ion binding (IEA,ISO,ISS)

metal ion binding (IEA)

protein binding (ISO)

transferase activity (IEA)

Molecular Pathway Annotations Click to see Annotation Detail View

O-linked glycan biosynthetic pathway (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	POMGnT1 mutations in congenital muscular dystrophy: genotype-phenotype correlation and expanded clinical spectrum.	Biancheri R, etal., Arch Neurol. 2006 Oct;63(10):1491-5.
2.	Molecular heterogeneity in fetal forms of type II lissencephaly.	Bouchet C, etal., Hum Mutat. 2007 Oct;28(10):1020-7.
3.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
4.	Novel POMGnT1 mutations cause muscle-eye-brain disease in Chinese patients.	Jiao H, etal., Mol Genet Genomics. 2013 Aug;288(7-8):297-308. doi: 10.1007/s00438-013-0749-5. Epub 2013 May 21.
5.	Breaches of the pial basement membrane are associated with defective dentate gyrus development in mouse models of congenital muscular dystrophies.	Li J, etal., Neurosci Lett. 2011 Nov 7;505(1):19-24. doi: 10.1016/j.neulet.2011.09.040. Epub 2011 Sep 29.
6.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
7.	OMIM Disease Annotation Pipeline	OMIM Disease Annotation Pipeline
8.	KEGG Annotation Import Pipeline	Pipeline to import KEGG annotations from KEGG into RGD
9.	GOA pipeline	RGD automated data pipeline
10.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
11.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
12.	Comprehensive gene review and curation	RGD comprehensive gene curation
13.	Novel POMGNT1 point mutations and intragenic rearrangements associated with muscle-eye-brain disease.	Saredi S, etal., J Neurol Sci. 2012 Jul 15;318(1-2):45-50. doi: 10.1016/j.jns.2012.04.008. Epub 2012 May 2.
14.	Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
15.	POMGnT1 gene alterations in a family with neurological abnormalities.	Vervoort VS, etal., Ann Neurol. 2004 Jul;56(1):143-8.
16.	Muscular dystrophy and neuronal migration disorder caused by mutations in a glycosyltransferase, POMGnT1.	Yoshida A, etal., Dev Cell 2001 Nov;1(5):717-24.

Additional References at PubMed

PMID:11742540	PMID:15489334	PMID:16458488	PMID:17034757	PMID:26908613	PMID:27391550	PMID:27493216

Genomics

Comparative Map Data

Pomgnt1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	5	134,870,971 - 134,880,864 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	5	134,870,975 - 134,880,863 (+)	Ensembl				GRCr8
mRatBN7.2	5	129,634,274 - 129,644,150 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	129,634,294 - 129,644,149 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	5	132,250,551 - 132,260,368 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	5	134,005,138 - 134,014,956 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	5	134,027,575 - 134,037,392 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	5	135,007,343 - 135,017,220 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	135,007,343 - 135,017,218 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	5	138,791,235 - 138,801,112 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	5	136,429,379 - 136,439,254 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	5	128,162,654 - 128,172,461 (+)	NCBI		Celera
RGSC_v3.1	5	136,434,604 - 136,444,480 (+)	NCBI
Cytogenetic Map	5	q35	NCBI

POMGNT1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	46,188,683 - 46,220,305 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	46,188,681 - 46,220,305 (-)	Ensembl			hg38	GRCh38
GRCh37	1	46,654,355 - 46,685,977 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	46,426,940 - 46,436,708 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	1	44,941,643 - 44,973,721 (-)	NCBI		Celera
Cytogenetic Map	1	p34.1	NCBI
HuRef	1	44,769,330 - 44,801,277 (-)	NCBI		HuRef
CHM1_1	1	46,771,477 - 46,803,118 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	1	46,065,903 - 46,097,522 (-)	NCBI		T2T-CHM13v2.0

Pomgnt1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	4	116,007,700 - 116,017,041 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	4	115,981,037 - 116,017,046 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	4	116,150,498 - 116,159,844 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	4	116,123,840 - 116,159,849 (+)	Ensembl			mm10	GRCm38
MGSCv37	4	115,823,123 - 115,832,449 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	4	115,648,457 - 115,657,776 (+)	NCBI		MGSCv36	mm8
Celera	4	114,888,693 - 114,898,002 (+)	NCBI		Celera
Cytogenetic Map	4	D1	NCBI
cM Map	4	53.1	NCBI

Pomgnt1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955464	12,077,406 - 12,086,700 (+)	Ensembl
ChiLan1.0	NW_004955464	12,076,815 - 12,086,961 (+)	NCBI	ChiLan1.0	ChiLan1.0

POMGNT1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	180,584,412 - 180,616,625 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	179,726,026 - 179,758,221 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	45,494,834 - 45,525,804 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	46,849,528 - 46,859,137 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	46,849,528 - 46,859,137 (-)	Ensembl			panPan2	panpan1.1

POMGNT1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	15	14,176,932 - 14,187,181 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	15	14,178,357 - 14,187,161 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	15	14,299,079 - 14,309,089 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	15	14,329,378 - 14,339,540 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	15	14,329,801 - 14,339,540 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	15	14,130,602 - 14,140,611 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	15	14,199,089 - 14,209,095 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	15	14,268,643 - 14,278,728 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Pomgnt1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405058	61,404,486 - 61,417,843 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936474	27,229,113 - 27,239,123 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936474	27,229,262 - 27,239,034 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

POMGNT1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	165,212,833 - 165,222,409 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	6	165,212,828 - 165,222,412 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	6	152,692,300 - 152,701,877 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

POMGNT1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	20	86,588,049 - 86,597,576 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	20	86,588,550 - 86,599,107 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666033	30,389,152 - 30,398,705 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Pomgnt1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624906	2,119,684 - 2,135,656 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624906	2,120,759 - 2,131,024 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Pomgnt1
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	1	39,833,765 - 39,843,335 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Pomgnt1
100 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	83
Count of miRNA genes:	66
Interacting mature miRNAs:	82
Transcripts:	ENSRNOT00000035312
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1331796	Thshl2	Thyroid stimulating hormone level QTL 2	2.3		blood thyroid-stimulating hormone amount (VT:0005119)	serum thyroid stimulating hormone level (CMO:0001248)	5	102105698	152749382	Rat
2303586	Gluco52	Glucose level QTL 52	2		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	5	100826632	145826632	Rat
10053720	Scort26	Serum corticosterone level QTL 26	2.06	0.0147	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	5	130249266	172190305	Rat
1549845	Scl44	Serum cholesterol level QTL 44	6		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	5	44924861	153890773	Rat
8552960	Pigfal15	Plasma insulin-like growth factor 1 level QTL 15			blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	5	116702075	161702075	Rat
1354583	Despr3	Despair related QTL3	4.98	0.0002	locomotor behavior trait (VT:0001392)	amount of time spent in voluntary immobility (CMO:0001043)	5	132930505	172190305	Rat
70212	Niddm25	Non-insulin dependent diabetes mellitus QTL 25	3.54		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	5	38207390	136631402	Rat
1300122	Wbc1	White blood cell count QTL 1	2.75		leukocyte quantity (VT:0000217)	total white blood cell count (CMO:0000365)	5	130678987	145274255	Rat
7365049	Bp359	Blood pressure QTL 359			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	133308734	140009902	Rat
61452	Ciaa5	CIA Autoantibody QTL 5	3.5		blood autoantibody amount (VT:0003725)	calculated serum anti-rat type 2 collagen autoantibody titer (CMO:0001281)	5	99905133	172190305	Rat
70156	Niddm30	Non-insulin dependent diabetes mellitus QTL 30	3.98		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	5	134369218	156289444	Rat
8552908	Pigfal4	Plasma insulin-like growth factor 1 level QTL 4	6.6		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	5	133789363	172190305	Rat
7411582	Foco3	Food consumption QTL 3	7.5	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	5	92583776	137583776	Rat
1331803	Rf32	Renal function QTL 32	2.798		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal vascular resistance (CMO:0001900)	5	134369199	172190305	Rat
61393	Bp7	Blood pressure QTL 7	4.5	0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	65089051	166764498	Rat
7207486	Bss109	Bone structure and strength QTL 109			femur strength trait (VT:0010010)	femur total energy absorbed before break (CMO:0001677)	5	112142946	157142946	Rat
7207481	Bss106	Bone structure and strength QTL 106	7.9		femur strength trait (VT:0010010)	femur ultimate force (CMO:0001675)	5	112142946	157142946	Rat
1302790	Scl20	Serum cholesterol level QTL 20	6.4	0.0001	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	5	110770739	155770739	Rat
1598861	Cm64	Cardiac mass QTL 64	2.9		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	5	133081618	172190305	Rat
1578766	Tcas11	Tongue tumor susceptibility QTL 11	4.12		tongue integrity trait (VT:0010553)	number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)	5	51657967	166600247	Rat
1549838	Bss4	Bone structure and strength QTL 4	9.2		femur strength trait (VT:0010010)	femur midshaft polar moment of inertia (CMO:0001669)	5	112142946	157142946	Rat
1581505	Rf54	Renal function QTL 54			kidney physiology trait (VT:0002136)	kidney 20-HETE level (CMO:0001854)	5	133270647	172190305	Rat
7411564	Bw135	Body weight QTL 135		0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	5	92583776	137583776	Rat
8694169	Bw148	Body weight QTL 148	5	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	5	133789363	172190305	Rat
8657050	Bw146	Body weight QTL 146	19.84	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	5	98972960	143972960	Rat
1581510	Cm54	Cardiac mass QTL 54	3.4	0.05	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	5	125969677	172190305	Rat
1576312	Emca8	Estrogen-induced mammary cancer QTL 8	4.1		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	55124766	172190305	Rat
7411601	Foco12	Food consumption QTL 12	19.7	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	5	92583776	137583776	Rat
2303618	Vencon1	Ventilatory control QTL 1	3.8		respiration trait (VT:0001943)	oxygen consumption (CMO:0002169)	5	100826632	145826632	Rat
2317056	Wbc3	White blood cell count QTL 3	2.51	0.01	leukocyte quantity (VT:0000217)	white blood cell count (CMO:0000027)	5	111236572	156236572	Rat
7394710	Emca12	Estrogen-induced mammary cancer QTL 12			mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	94034903	139034903	Rat
724525	Bp147	Blood pressure QTL 147	4.3	0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	131708216	172190305	Rat
1598847	Cm62	Cardiac mass QTL 62	3.4		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	5	114131300	159131300	Rat
2293642	Bss37	Bone structure and strength QTL 37	4.64	0.0001	femur strength trait (VT:0010010)	femur ultimate force (CMO:0001675)	5	125969677	156302135	Rat
70189	Mcs5	Mammary carcinoma susceptibility QTL 5	10.51		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	60601597	137492949	Rat
7207488	Bss110	Bone structure and strength QTL 1	8.4		femur strength trait (VT:0010010)	femur stiffness (CMO:0001674)	5	112142946	157142946	Rat
8694441	Bw169	Body weight QTL 169	17.61	0.001	retroperitoneal fat pad mass (VT:0010430)	retroperitoneal fat pad weight to body weight ratio (CMO:0000635)	5	116702075	161702075	Rat
7207491	Bss112	Bone structure and strength QTL 112	7		femur morphology trait (VT:0000559)	femur midshaft cortical cross-sectional area (CMO:0001663)	5	112142946	157142946	Rat
8694389	Bw160	Body weight QTL 160	6.17	0.001	body lean mass (VT:0010483)	lean tissue morphological measurement (CMO:0002184)	5	116702075	161702075	Rat
2290448	Scl54	Serum cholesterol level QTL 54	2.93		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	5	36460764	136631402	Rat
1354598	Srn6	Serum renin concentration QTL 6	3.8		blood renin amount (VT:0003349)	plasma renin activity level (CMO:0000116)	5	74335621	156302135	Rat
8694198	Abfw3	Abdominal fat weight QTL 3	16.13	0.001	visceral adipose mass (VT:0010063)	abdominal fat pad weight to body weight ratio (CMO:0000095)	5	116702075	161702075	Rat
2306971	Anxrr21	Anxiety related response QTL 21	9.47		fear/anxiety-related behavior trait (VT:1000241)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	5	70969494	136328156	Rat
1298089	Scl14	Serum cholesterol level QTL 14	5.8	0.0004	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	5	114131300	159131300	Rat
1598819	Bp292	Blood pressure QTL 292	4.3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	133081618	172190305	Rat
6903316	Bw113	Body weight QTL 113	2	0.0103	body mass (VT:0001259)	body weight (CMO:0000012)	5	92881678	137881678	Rat
1358187	Emca1	Estrogen-induced mammary cancer QTL 1	4.4		mammary gland integrity trait (VT:0010552)	post-insult time to mammary tumor formation (CMO:0000345)	5	104262817	153890625	Rat

Markers in Region

MARC_7377-7378:992008389:1

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	5	129,639,150 - 129,639,535 (+)	MAPPER	mRatBN7.2
Rnor_6.0	5	135,012,219 - 135,012,603	NCBI	Rnor6.0
Rnor_5.0	5	138,796,111 - 138,796,495	UniSTS	Rnor5.0
RGSC_v3.4	5	136,434,255 - 136,434,639	UniSTS	RGSC3.4
Celera	5	128,167,462 - 128,167,846	UniSTS
Cytogenetic Map	5	q36	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	162	91	90	59	92	59	6	356	192	11	141	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001007747	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006238683	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063287979	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC127828	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC083641	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474008	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000005	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000035312 ⟹ ENSRNOP00000035825

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	5	134,870,975 - 134,880,863 (+)	Ensembl
mRatBN7.2 Ensembl	5	129,634,301 - 129,644,015 (+)	Ensembl
Rnor_6.0 Ensembl	5	135,007,343 - 135,017,218 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000098939 ⟹ ENSRNOP00000091939

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	5	134,870,975 - 134,880,863 (+)	Ensembl
mRatBN7.2 Ensembl	5	129,634,306 - 129,644,132 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000101655 ⟹ ENSRNOP00000093130

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	5	129,634,306 - 129,644,132 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000107786 ⟹ ENSRNOP00000088565

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	5	134,872,039 - 134,880,863 (+)	Ensembl
mRatBN7.2 Ensembl	5	129,635,186 - 129,644,132 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000108219 ⟹ ENSRNOP00000084795

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	5	134,870,975 - 134,880,863 (+)	Ensembl
mRatBN7.2 Ensembl	5	129,634,294 - 129,644,149 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000109490 ⟹ ENSRNOP00000095021

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	5	134,871,891 - 134,880,863 (+)	Ensembl
mRatBN7.2 Ensembl	5	129,635,186 - 129,644,132 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000115433 ⟹ ENSRNOP00000093579

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	5	134,870,975 - 134,880,863 (+)	Ensembl
mRatBN7.2 Ensembl	5	129,634,306 - 129,644,132 (+)	Ensembl

RefSeq Acc Id:

NM_001007747 ⟹ NP_001007748

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	134,870,989 - 134,880,864 (+)	NCBI
mRatBN7.2	5	129,634,274 - 129,644,150 (+)	NCBI
Rnor_6.0	5	135,007,343 - 135,017,218 (+)	NCBI
Rnor_5.0	5	138,791,235 - 138,801,112 (+)	NCBI
RGSC_v3.4	5	136,429,379 - 136,439,254 (+)	RGD
Celera	5	128,162,654 - 128,172,461 (+)	RGD

Sequence:

show sequence

ATGGAGGAGGCGGAGGCCGCGGAGACCGCGGCGCGCGGGGCCGAGCTGTACGGGCCCGAGCGCG
GCCCGAGCGGGGCCGGGGGCCCCTGAGCCTCCCCTCAGATTCCTGAAGTCATGGACTGGCCGGG
ACAGGGGTGATTCCCTAATCCAGTATGGATGACTGGAAGCCTAGTCCCCTCATCAAGCCCTTTG
GGGCTAGGAAGAAACGGAGCTGGTATCTTACCTGGAAGTATAAACTGACAAACCAGCGGGCCCT
GCGAAGATTCTGTCAGACAGGAGCTGTGCTTTTCCTGCTGGTGACTGTCATTGTGAACATCAAG
TTGATCCTAGACACTCGGAGAGCCATCAGCGAGGCCAATGAAGACCCTGAACCAGAGCAAGACT
ACGATGAGGCCCTAGGACGCTTAGAGTCCCCTCGGCACAGAGGCAGCAGTCCCCGACGCGTGCT
GGATGTGGAAGTATACTCCAGTAGAAGCAAAGTGTATGTGGCGGTAGATGGCACTACGGTGCTA
GAGGATGAGGCCCGGGAGCAGGGCCGAGGCATCCATGTCATCGTCCTCAACCAGGCCACGGGCC
ACGTGATGGCAAAGCGTGTGTTTGACACGTACTCTCCTCATGAGGATGAGGCCATGGTGCTATT
CCTCAACATGGTGGCGCCCGGCCGTGTACTGATCTGCACAGTTAAGGATGAGGGCTCCTTCCAC
CTCAAGGACACAGCAAAGGCTCTGCTGAGGAGCCTGGGAAGCCAGGCAGGCCCTGCCCTTGGCT
GGAGGGACACCTGGGCCTTCGTGGGACGAAAAGGAGGTCCTGTTCTTGGCGAGAAGCATTCTAA
ATCTCCTGCCCTCTCCTCCTGGGGTGACCCAGTCCTGCTGAAGACAGATGTGCCACTCAGCTCA
GCTGAAGAGGCTGAGTGTCACTGGGCAGATACAGAGTTGAACCGCCGCCGCAGGCGCTTCTGCA
GCAAAGTCGAGGGCTACGGGAGCGTGTGCAGCTGCAAGGACCCAACACCTATTGAGTTCAGCCC
TGACCCACTTCCAGACAATAAAGTCCTCAATGTGCCTGTGGCTGTCATTGCAGGGAACCGGCCC
AATTACCTGTACAGGATGCTGCGCTCTCTGCTGTCAGCCCAAGGGGTATCTCCACAGATGATAA
CAGTCTTCATTGATGGCTACTATGAGGAGCCAATGGATGTGGTGGCACTGTTTGGTCTGAGAGG
CATCCAGCACACTCCCATCAGCATCAAGAACGCCCGTGTGTCTCAGCACTACAAGGCCAGCCTC
ACTGCCACTTTCAACCTGTTTCCGGAGGCCAAGTTTGCTGTGGTTCTGGAAGAGGACCTGGACA
TCGCTGTGGACTTTTTCAGTTTCCTGAGCCAGTCCATCCACCTGCTGGAGGAAGATGACAGCCT
GTACTGCATCTCTGCTTGGAATGACCAGGGGTATGAACACACAGCTGAGGATCCAGCACTACTG
TACCGTGTGGAGACCATGCCTGGGTTGGGATGGGTGCTCAGGAAATCTCTATACAAGGAGGAGC
TTGAGCCCAAGTGGCCCACACCAGAAAAGCTGTGGGACTGGGACATGTGGATGCGGATGCCGGA
ACAGCGCCGTGGCCGTGAGTGCATCATCCCGGATGTTTCCCGATCCTACCACTTTGGCATCGTG
GGCCTCAACATGAATGGCTACTTTCATGAGGCCTACTTCAAGAAGCACAAGTTCAACACAGTCC
CAGGTGTCCAGCTCAGGAATGTAGACAGTCTGAAGAAAGAAGCTTATGAAGTGGAAATTCACAG
GCTGCTCAGTGAGGCCGAGGTTTTGGACCACAGCAAGGACCCTTGTGAAGACTCCTTCCTGCCA
GACACAGAGGGCCATACCTATGTGGCATTTATCCGGATGGAGAAAGATGATGACTTCACCACCT
GGACTCAGCTTGCCAAGTGCCTCCACATTTGGGATCTGGACGTTCGTGGCAACCACCGGGGCCT
GTGGAGATTATTTCGGAAGAAGAACCACTTTTTGGTGGTGGGGGTCCCAGCCTCCCCTTACTCA
GTGAAGAAGCCACCCTCAGTCACCCCTATTTTCCTGGAGCCACCCCCAAAGGAAGAAGGAGCCC
CAGGGGCTGCTGAACAAACATGAAGTCTCCTCCAGGACCCTGCAGGGCTGGGTACTGTGTACCC
CCAGACAGGCTAGCCCATTGCCCTATCCTGTAGGATTTTTGTAGATGCCGGTAGGGGTTAGGGC
TGGTTTGTTTTTAACATGGGATTTAATTACTAACTCTAAGGGGAAGGATCCCCTGCTCCAACAC
CCCTATTCCTGAGTTTAAGGTCTATTTATTTACTTCCTTGTTGAAGAAGAGCAGGAGGGTTCCC
AGGCCCTCTTTGGGATCCCTGGGTAGCTGATCCACTCTTTACACCCCGTCCTCCCAGGCCTGGC
TCAGAACCTATTTATTGACTGTCCCGAGGGCCTTGGGAATAGGCCCAACCTGGGGCCTTTATTC
CTCTCTGGACCAGGATGCTGCCCTGAGGGTGGGACTGGCTCATACTCAGGAAAACTGCTGTGCC
CAGCTGATGGACAGGCCCGTTCAGGGTCCATGTGCTGACAGACTCACTCAGAGACCTTTAGACA
CTGGACCAGGCCTCCTCTTAGCCTTCTCTTTGTCCAGATTTCCAAAGCTGGACAAAGATGATCA
TTGATTAAAAAAGGAGAAAACCTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006238683 ⟹ XP_006238745

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	134,871,821 - 134,880,864 (+)	NCBI
mRatBN7.2	5	129,635,091 - 129,644,150 (+)	NCBI
Rnor_6.0	5	135,008,072 - 135,017,220 (+)	NCBI
Rnor_5.0	5	138,791,235 - 138,801,112 (+)	NCBI

Sequence:

show sequence

CCACGTGTCCCAAAAGCTGGCTTCCTAACTTTACCCTAACATAGACTATGAACTAACTACCTTG
GCTACCAAGAAGAGGCAGCAAATTCCTGGAGGGGAAGCCTCTGTGTGTTGTGGCCTTCTCAGTC
AGTGTTTTAGACCCAGGATTCTGGAATCAGAACCCAACTCTGACCTCCTAAGCATCAAACACAA
ACCGGAAGTCTGGTCAGGCTGGCTTTGCCCCTGACACCCAACTGTCAGGCAGTGTGGCCTACAT
TCTTCTGTGACTTCCGATTATCCACCGTGGGTCTCAGATCCTAAATCTATCTCAAAGAACTAGT
TATGGAGGGGAGCAAAGAAGCCAAAGACTCAAATGGGAGAGTACAAGACCACTCGACAGGAGCT
GTGCTTTTCCTGCTGGTGACTGTCATTGTGAACATCAAGTTGATCCTAGACACTCGGAGAGCCA
TCAGCGAGGCCAATGAAGACCCTGAACCAGAGCAAGACTACGATGAGGCCCTAGGACGCTTAGA
GTCCCCTCGGCACAGAGGCAGCAGTCCCCGACGCGTGCTGGATGTGGAAGTATACTCCAGTAGA
AGCAAAGTGTATGTGGCGGTAGATGGCACTACGGTGCTAGAGGATGAGGCCCGGGAGCAGGGCC
GAGGCATCCATGTCATCGTCCTCAACCAGGCCACGGGCCACGTGATGGCAAAGCGTGTGTTTGA
CACGTACTCTCCTCATGAGGATGAGGCCATGGTGCTATTCCTCAACATGGTGGCGCCCGGCCGT
GTACTGATCTGCACAGTTAAGGATGAGGGCTCCTTCCACCTCAAGGACACAGCAAAGGCTCTGC
TGAGGAGCCTGGGAAGCCAGGCAGGCCCTGCCCTTGGCTGGAGGGACACCTGGGCCTTCGTGGG
ACGAAAAGGAGGTCCTGTTCTTGGCGAGAAGCATTCTAAATCTCCTGCCCTCTCCTCCTGGGGT
GACCCAGTCCTGCTGAAGACAGATGTGCCACTCAGCTCAGCTGAAGAGGCTGAGTGTCACTGGG
CAGATACAGAGTTGAACCGCCGCCGCAGGCGCTTCTGCAGCAAAGTCGAGGGCTACGGGAGCGT
GTGCAGCTGCAAGGACCCAACACCTATTGAGTTCAGCCCTGACCCACTTCCAGACAATAAAGTC
CTCAATGTGCCTGTGGCTGTCATTGCAGGGAACCGGCCCAATTACCTGTACAGGATGCTGCGCT
CTCTGCTGTCAGCCCAAGGGGTATCTCCACAGATGATAACAGTCTTCATTGATGGCTACTATGA
GGAGCCAATGGATGTGGTGGCACTGTTTGGTCTGAGAGGCATCCAGCACACTCCCATCAGCATC
AAGAACGCCCGTGTGTCTCAGCACTACAAGGCCAGCCTCACTGCCACTTTCAACCTGTTTCCGG
AGGCCAAGTTTGCTGTGGTTCTGGAAGAGGACCTGGACATCGCTGTGGACTTTTTCAGTTTCCT
GAGCCAGTCCATCCACCTGCTGGAGGAAGATGACAGCCTGTACTGCATCTCTGCTTGGAATGAC
CAGGGGTATGAACACACAGCTGAGGATCCAGCACTACTGTACCGTGTGGAGACCATGCCTGGGT
TGGGATGGGTGCTCAGGAAATCTCTATACAAGGAGGAGCTTGAGCCCAAGTGGCCCACACCAGA
AAAGCTGTGGGACTGGGACATGTGGATGCGGATGCCGGAACAGCGCCGTGGCCGTGAGTGCATC
ATCCCGGATGTTTCCCGATCCTACCACTTTGGCATCGTGGGCCTCAACATGAATGGCTACTTTC
ATGAGGCCTACTTCAAGAAGCACAAGTTCAACACAGTCCCAGGTGTCCAGCTCAGGAATGTAGA
CAGTCTGAAGAAAGAAGCTTATGAAGTGGAAATTCACAGGCTGCTCAGTGAGGCCGAGGTTTTG
GACCACAGCAAGGACCCTTGTGAAGACTCCTTCCTGCCAGACACAGAGGGCCATACCTATGTGG
CATTTATCCGGATGGAGAAAGATGATGACTTCACCACCTGGACTCAGCTTGCCAAGTGCCTCCA
CATTTGGGATCTGGACGTTCGTGGCAACCACCGGGGCCTGTGGAGATTATTTCGGAAGAAGAAC
CACTTTTTGGTGGTGGGGGTCCCAGCCTCCCCTTACTCAGTGAAGAAGCCACCCTCAGTCACCC
CTATTTTCCTGGAGCCACCCCCAAAGGAAGAAGGAGCCCCAGGGGCTGCTGAACAAACATGAAG
TCTCCTCCAGGACCCTGCAGGGCTGGGTACTGTGTACCCCCAGACAGGCTAGCCCATTGCCCTA
TCCTGTAGGATTTTTGTAGATGCCGGTAGGGGTTAGGGCTGGTTTGTTTTTAACATGGGATTTA
ATTACTAACTCTAAGGGGAAGGATCCCCTGCTCCAACACCCCTATTCCTGAGTTTAAGGTCTAT
TTATTTACTTCCTTGTTGAAGAAGAGCAGGAGGGTTCCCAGGCCCTCTTTGGGATCCCTGGGTA
GCTGATCCACTCTTTACACCCCGTCCTCCCAGGCCTGGCTCAGAACCTATTTATTGACTGTCCC
GAGGGCCTTGGGAATAGGCCCAACCTGGGGCCTTTATTCCTCTCTGGACCAGGATGCTGCCCTG
AGGGTGGGACTGGCTCATACTCAGGAAAACTGCTGTGCCCAGCTGATGGACAGGCCCGTTCAGG
GTCCATGTGCTGACAGACTCACTCAGAGACCTTTAGACACTGGACCAGGCCTCCTCTTAGCCTT
CTCTTTGTCCAGATTTCCAAAGCTGGACAAAGATGATCATTGATTAAAAAAGGAGAAAACCTGG
G

hide sequence

RefSeq Acc Id:

XM_063287979 ⟹ XP_063144049

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	134,870,971 - 134,880,864 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001007748	(Get FASTA)	NCBI Sequence Viewer
	XP_006238745	(Get FASTA)	NCBI Sequence Viewer
	XP_063144049	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH83641	(Get FASTA)	NCBI Sequence Viewer
	EDL90286	(Get FASTA)	NCBI Sequence Viewer
	EDL90287	(Get FASTA)	NCBI Sequence Viewer
	EDL90288	(Get FASTA)	NCBI Sequence Viewer
	EDL90289	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000035825
	ENSRNOP00000095021
GenBank Protein	Q5XIN7	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_001007748 ⟸ NM_001007747

- UniProtKB:

Q5XIN7 (UniProtKB/Swiss-Prot), A0A8L2QK62 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MDDWKPSPLIKPFGARKKRSWYLTWKYKLTNQRALRRFCQTGAVLFLLVTVIVNIKLILDTRRA
ISEANEDPEPEQDYDEALGRLESPRHRGSSPRRVLDVEVYSSRSKVYVAVDGTTVLEDEAREQG
RGIHVIVLNQATGHVMAKRVFDTYSPHEDEAMVLFLNMVAPGRVLICTVKDEGSFHLKDTAKAL
LRSLGSQAGPALGWRDTWAFVGRKGGPVLGEKHSKSPALSSWGDPVLLKTDVPLSSAEEAECHW
ADTELNRRRRRFCSKVEGYGSVCSCKDPTPIEFSPDPLPDNKVLNVPVAVIAGNRPNYLYRMLR
SLLSAQGVSPQMITVFIDGYYEEPMDVVALFGLRGIQHTPISIKNARVSQHYKASLTATFNLFP
EAKFAVVLEEDLDIAVDFFSFLSQSIHLLEEDDSLYCISAWNDQGYEHTAEDPALLYRVETMPG
LGWVLRKSLYKEELEPKWPTPEKLWDWDMWMRMPEQRRGRECIIPDVSRSYHFGIVGLNMNGYF
HEAYFKKHKFNTVPGVQLRNVDSLKKEAYEVEIHRLLSEAEVLDHSKDPCEDSFLPDTEGHTYV
AFIRMEKDDDFTTWTQLAKCLHIWDLDVRGNHRGLWRLFRKKNHFLVVGVPASPYSVKKPPSVT
PIFLEPPPKEEGAPGAAEQT

hide sequence

RefSeq Acc Id:	XP_006238745 ⟸ XM_006238683
- Peptide Label:	isoform X2
- UniProtKB:	A0A8I6AMP8 (UniProtKB/TrEMBL), A6JZ66 (UniProtKB/TrEMBL), A0A8L2QK62 (UniProtKB/TrEMBL)
- Sequence:	show sequence MEGSKEAKDSNGRVQDHSTGAVLFLLVTVIVNIKLILDTRRAISEANEDPEPEQDYDEALGRLE SPRHRGSSPRRVLDVEVYSSRSKVYVAVDGTTVLEDEAREQGRGIHVIVLNQATGHVMAKRVFD TYSPHEDEAMVLFLNMVAPGRVLICTVKDEGSFHLKDTAKALLRSLGSQAGPALGWRDTWAFVG RKGGPVLGEKHSKSPALSSWGDPVLLKTDVPLSSAEEAECHWADTELNRRRRRFCSKVEGYGSV CSCKDPTPIEFSPDPLPDNKVLNVPVAVIAGNRPNYLYRMLRSLLSAQGVSPQMITVFIDGYYE EPMDVVALFGLRGIQHTPISIKNARVSQHYKASLTATFNLFPEAKFAVVLEEDLDIAVDFFSFL SQSIHLLEEDDSLYCISAWNDQGYEHTAEDPALLYRVETMPGLGWVLRKSLYKEELEPKWPTPE KLWDWDMWMRMPEQRRGRECIIPDVSRSYHFGIVGLNMNGYFHEAYFKKHKFNTVPGVQLRNVD SLKKEAYEVEIHRLLSEAEVLDHSKDPCEDSFLPDTEGHTYVAFIRMEKDDDFTTWTQLAKCLH IWDLDVRGNHRGLWRLFRKKNHFLVVGVPASPYSVKKPPSVTPIFLEPPPKEEGAPGAAEQT hide sequence

Ensembl Acc Id:

ENSRNOP00000035825 ⟸ ENSRNOT00000035312

Ensembl Acc Id:

ENSRNOP00000093130 ⟸ ENSRNOT00000101655

Ensembl Acc Id:

ENSRNOP00000095021 ⟸ ENSRNOT00000109490

Ensembl Acc Id:

ENSRNOP00000088565 ⟸ ENSRNOT00000107786

Ensembl Acc Id:

ENSRNOP00000091939 ⟸ ENSRNOT00000098939

Ensembl Acc Id:

ENSRNOP00000093579 ⟸ ENSRNOT00000115433

Ensembl Acc Id:

ENSRNOP00000084795 ⟸ ENSRNOT00000108219

RefSeq Acc Id:	XP_063144049 ⟸ XM_063287979
- Peptide Label:	isoform X1
- UniProtKB:	Q5XIN7 (UniProtKB/Swiss-Prot), A0A8L2QK62 (UniProtKB/TrEMBL)

Protein Domains

GG-type lectin ILEI/PANDER

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q5XIN7-F1-model_v2	AlphaFold	Q5XIN7	1-660	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13693930

Promoter ID:

EPDNEW_R4455

Type:

initiation region

Name:

Pomgnt1_1

Description:

protein O-linked mannose N-acetylglucosaminyltransferase 1 (beta1,2-)

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	5	135,007,329 - 135,007,389	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1359396	AgrOrtholog
BioCyc Gene	G2FUF-40263	BioCyc
BioCyc Pathway	PWY-7922 [protein O-mannosylation II (mammals, core M1 and core M2)]	BioCyc
BioCyc Pathway Image	PWY-7922	BioCyc
Ensembl Genes	ENSRNOG00000023455	Ensembl, ENTREZGENE
Ensembl Transcript	ENSRNOT00000035312	ENTREZGENE
	ENSRNOT00000109490	ENTREZGENE
Gene3D-CATH	Spore Coat Polysaccharide Biosynthesis Protein SpsA, Chain A	UniProtKB/Swiss-Prot
IMAGE_CLONE	IMAGE:7134894	IMAGE-MGC_LOAD
InterPro	Glyco_trans_13	UniProtKB/Swiss-Prot
	ILEI/PANDER_dom	UniProtKB/Swiss-Prot
	Nucleotide-diphossugar_trans	UniProtKB/Swiss-Prot
	O-linked_mannose_GnT	UniProtKB/Swiss-Prot
	POMGNT1_PANDER-like	UniProtKB/Swiss-Prot
KEGG Report	rno:362567	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:94463	IMAGE-MGC_LOAD
NCBI Gene	362567	ENTREZGENE
PANTHER	PROTEIN O-LINKED-MANNOSE BETA-1,2-N-ACETYLGLUCOSAMINYLTRANSFERASE 1	UniProtKB/Swiss-Prot
	PROTEIN O-LINKED-MANNOSE BETA-1,2-N-ACETYLGLUCOSAMINYLTRANSFERASE 1	UniProtKB/Swiss-Prot
Pfam	GNT-I	UniProtKB/Swiss-Prot
	ILEI	UniProtKB/Swiss-Prot
PhenoGen	Pomgnt1	PhenoGen
PROSITE	GG_LECTIN	UniProtKB/Swiss-Prot
RatGTEx	ENSRNOG00000023455	RatGTEx
Superfamily-SCOP	SSF53448	UniProtKB/Swiss-Prot
UniProt	A0A8I6A0W0_RAT	UniProtKB/TrEMBL
	A0A8I6AB13_RAT	UniProtKB/TrEMBL
	A0A8I6AGM8_RAT	UniProtKB/TrEMBL
	A0A8I6AHV0_RAT	UniProtKB/TrEMBL
	A0A8I6AMP8	ENTREZGENE, UniProtKB/TrEMBL
	A0A8L2QK62	ENTREZGENE, UniProtKB/TrEMBL
	A6JZ64_RAT	UniProtKB/TrEMBL
	A6JZ65_RAT	UniProtKB/TrEMBL
	A6JZ66	ENTREZGENE, UniProtKB/TrEMBL
	A6JZ67_RAT	UniProtKB/TrEMBL
	PMGT1_RAT	UniProtKB/Swiss-Prot, ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2013-08-14	Pomgnt1	protein O-linked mannose N-acetylglucosaminyltransferase 1 (beta 1,2-)	Pomgnt1	protein O-linked mannose beta1,2-N-acetylglucosaminyltransferase	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-03-30	Pomgnt1	protein O-linked mannose beta1,2-N-acetylglucosaminyltransferase	MGC94463	O-linked mannose beta1,2-N-acetylglucosaminyltransferase	Symbol and Name updated	1299863	APPROVED
2005-07-29	MGC94463	O-linked mannose beta1,2-N-acetylglucosaminyltransferase			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - MGI

Imported Disease Annotations - OMIM

Imported Annotations - KEGG (archival)

BioCyc Pathways

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - MGI

Imported Disease Annotations - OMIM

Imported Annotations - KEGG (archival)

BioCyc Pathways