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Gene: Arhgap15 (Rho GTPase activating protein 15) Rattus norvegicus

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Symbol:

Arhgap15

Name:

Rho GTPase activating protein 15

RGD ID:

1359304

Description:

Predicted to enable GTPase activator activity. Predicted to be involved in small GTPase-mediated signal transduction. Predicted to act upstream of or within regulation of cell shape. Predicted to be located in nucleoplasm. Predicted to be active in cytoplasm and plasma membrane. Orthologous to human ARHGAP15 (Rho GTPase activating protein 15); INTERACTS WITH 17beta-estradiol; 17beta-estradiol 3-benzoate; 2,3,7,8-tetrachlorodibenzodioxine.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

LOC295635; rho GTPase-activating protein 15; rho GTPase-activating protein 15-like; rho-type GTPase-activating protein 15; similar to RIKEN cDNA 5830480G12

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	ARHGAP15 (Rho GTPase activating protein 15)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Arhgap15 (Rho GTPase activating protein 15)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Arhgap15 (Rho GTPase activating protein 15)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	ARHGAP15 (Rho GTPase activating protein 15)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	ARHGAP15 (Rho GTPase activating protein 15)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Arhgap15 (Rho GTPase activating protein 15)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	ARHGAP15 (Rho GTPase activating protein 15)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	ARHGAP15 (Rho GTPase activating protein 15)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Arhgap15 (Rho GTPase activating protein 15)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	ARHGAP15 (Rho GTPase activating protein 15)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Arhgap15 (Rho GTPase activating protein 15)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Arhgap15 (Rho GTPase activating protein 15)	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	arhgap15 (Rho GTPase activating protein 15)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	RGA1	Alliance	DIOPT (PANTHER\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	RGA2	Alliance	DIOPT (PANTHER\|SonicParanoid)
Caenorhabditis elegans (roundworm):	tag-325	Alliance	DIOPT (InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Caenorhabditis elegans (roundworm):	tag-325	Alliance	DIOPT (OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Saccharomyces cerevisiae (baker's yeast):	RGD1	Alliance	DIOPT (PANTHER\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	BEM2	Alliance	DIOPT (OrthoInspector\|PANTHER)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	48,382,945 - 49,002,213 (+)	NCBI		GRCr8
GRCr8 Ensembl	3	48,382,904 - 49,011,378 (+)	Ensembl		GRCr8 Ensembl
mRatBN7.2	3	27,989,368 - 28,592,722 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	27,989,633 - 28,600,265 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	3	31,386,432 - 31,990,702 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	39,971,464 - 40,575,746 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	37,790,180 - 38,394,454 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	28,626,987 - 29,236,225 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	28,627,084 - 29,236,219 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	3	33,831,379 - 34,442,272 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	3	24,256,620 - 24,389,618 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	3	26,304,736 - 26,903,806 (+)	NCBI		Celera
RGSC_v3.1	3	24,152,991 - 24,765,169 (+)	NCBI
Cytogenetic Map	3	q12	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autosomal dominant intellectual developmental disorder 1 (ISO)

Mowat-Wilson syndrome (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(-)-demecolcine (ISO)

1,2-dichloroethane (ISO)

17beta-estradiol (EXP)

17beta-estradiol 3-benzoate (EXP)

2,3',4,4',5-Pentachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,3,7,8-Tetrachlorodibenzofuran (EXP)

4,4'-sulfonyldiphenol (ISO)

acetamide (EXP)

aflatoxin B1 (ISO)

all-trans-retinoic acid (ISO)

alpha-Zearalanol (EXP)

amiodarone (ISO)

atrazine (EXP)

Azoxymethane (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP,ISO)

buta-1,3-diene (ISO)

cadmium atom (ISO)

cadmium dichloride (ISO)

carbamazepine (ISO)

carbon nanotube (ISO)

CGP 52608 (ISO)

chloroprene (ISO)

choline (ISO)

cisplatin (ISO)

Cuprizon (EXP)

DDT (EXP)

dextran sulfate (ISO)

diethylstilbestrol (EXP)

dimethylarsinic acid (ISO)

dorsomorphin (ISO)

ethanol (ISO)

ethyl methanesulfonate (ISO)

folic acid (ISO)

formaldehyde (ISO)

genistein (EXP,ISO)

gentamycin (EXP)

glyphosate (ISO)

L-methionine (ISO)

methoxychlor (EXP)

methyl methanesulfonate (ISO)

methylarsonic acid (ISO)

methylmercury chloride (ISO)

nickel atom (ISO)

okadaic acid (ISO)

ozone (ISO)

p-chloromercuribenzoic acid (ISO)

panobinostat (ISO)

phenylmercury acetate (ISO)

pirinixic acid (ISO)

SB 431542 (ISO)

sodium arsenate (ISO)

sodium arsenite (ISO)

testosterone (EXP)

theophylline (ISO)

thioacetamide (EXP)

titanium dioxide (ISO)

trichostatin A (ISO)

triphenyl phosphate (ISO)

valproic acid (ISO)

vinclozolin (EXP)

vincristine (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

regulation of cell shape (ISO)

signal transduction (IEA)

small GTPase-mediated signal transduction (IBA)

Cellular Component

cytoplasm (IBA,IEA)

membrane (IEA)

nucleoplasm (ISO)

plasma membrane (IBA,ISO)

Molecular Function

GTPase activator activity (IBA,IEA,ISO)

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	GOA pipeline	RGD automated data pipeline
3.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
5.	Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.

Additional References at PubMed

PMID:12650940

Genomics

Comparative Map Data

Arhgap15
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	48,382,945 - 49,002,213 (+)	NCBI		GRCr8
GRCr8 Ensembl	3	48,382,904 - 49,011,378 (+)	Ensembl		GRCr8 Ensembl
mRatBN7.2	3	27,989,368 - 28,592,722 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	27,989,633 - 28,600,265 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	3	31,386,432 - 31,990,702 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	39,971,464 - 40,575,746 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	37,790,180 - 38,394,454 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	28,626,987 - 29,236,225 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	28,627,084 - 29,236,219 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	3	33,831,379 - 34,442,272 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	3	24,256,620 - 24,389,618 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	3	26,304,736 - 26,903,806 (+)	NCBI		Celera
RGSC_v3.1	3	24,152,991 - 24,765,169 (+)	NCBI
Cytogenetic Map	3	q12	NCBI

ARHGAP15
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	2	143,129,419 - 143,768,352 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	2	143,091,362 - 143,768,352 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	2	143,886,988 - 144,525,921 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	2	143,603,433 - 144,242,391 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	2	143,720,694 - 144,359,652	NCBI
Celera	2	137,599,271 - 138,238,118 (+)	NCBI		Celera
Cytogenetic Map	2	q22.2-q22.3	NCBI
HuRef	2	135,878,185 - 136,517,347 (+)	NCBI		HuRef
CHM1_1	2	143,891,883 - 144,531,020 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	2	143,577,714 - 144,216,567 (+)	NCBI		T2T-CHM13v2.0

Arhgap15
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	43,638,786 - 44,285,965 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	2	43,638,836 - 44,285,965 (+)	Ensembl		GRCm39 Ensembl
GRCm38	2	43,748,798 - 44,395,953 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	43,748,824 - 44,395,953 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	2	43,604,344 - 44,243,143 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	2	43,570,836 - 44,209,632 (+)	NCBI		MGSCv36	mm8
Celera	2	45,470,136 - 46,103,622 (+)	NCBI		Celera
Cytogenetic Map	2	B	NCBI
cM Map	2	26.13	NCBI

Arhgap15
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955440	9,590,685 - 10,189,937 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955440	9,591,173 - 10,182,086 (+)	NCBI	ChiLan1.0	ChiLan1.0

ARHGAP15
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	13	31,134,907 - 31,774,416 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	2B	31,149,867 - 31,789,384 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	2B	16,067,081 - 16,706,372 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	2B	147,218,310 - 147,855,697 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	2B	147,217,528 - 147,855,517 (+)	Ensembl	panpan1.1		panPan2

ARHGAP15
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	19	45,208,212 - 45,815,646 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	19	45,208,671 - 45,831,652 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	19	45,460,560 - 46,068,711 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	19	46,665,689 - 47,274,594 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	19	46,666,230 - 47,274,595 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	19	45,324,757 - 45,933,236 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	19	45,455,690 - 46,065,090 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	19	46,850,717 - 47,460,481 (+)	NCBI		UU_Cfam_GSD_1.0

Arhgap15
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405303	108,063,480 - 108,665,504 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936469	32,951,231 - 33,528,407 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936469	33,203,456 - 33,554,167 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ARHGAP15
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	15	8,192,607 - 8,811,795 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	15	8,192,599 - 8,811,794 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	15	9,017,681 - 9,571,345 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

ARHGAP15
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	10	28,493,123 - 29,123,849 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	10	28,519,775 - 29,124,579 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666040	170,443,744 - 171,077,092 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Arhgap15
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624732	42,865,128 - 43,481,731 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624732	42,865,010 - 43,482,670 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Arhgap15
4629 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	162
Count of miRNA genes:	112
Interacting mature miRNAs:	125
Transcripts:	ENSRNOT00000049884
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
6893355	Bw101	Body weight QTL 101	0.4	0.38	body mass (VT:0001259)	body weight (CMO:0000012)	3	5766390	50766390	Rat
1298073	Cm13	Cardiac mass QTL 13	2.5		heart mass (VT:0007028)	heart wet weight (CMO:0000069)	3	45423609	58601291	Rat
2303593	Gluco46	Glucose level QTL 46	3		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	3	48876619	93876619	Rat
1354590	Despr11	Despair related QTL 11		0.000031	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	3	48876619	93876619	Rat
634306	Bp140	Blood pressure QTL 140	3.3	0.0013	arterial blood pressure trait (VT:2000000)	body weight (CMO:0000012)	3	37772258	55937853	Rat
10401810	Kidm53	Kidney mass QTL 53			kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	3	28625339	67641995	Rat
1298526	Arunc3	Aerobic running capacity QTL 3	2.2		exercise endurance trait (VT:0002332)	maximum distance run on treadmill (CMO:0001406)	3	6125437	51125437	Rat
2298542	Neuinf11	Neuroinflammation QTL 11	3.9		nervous system integrity trait (VT:0010566)	spinal cord complement component 1, q subcomponent, B chain mRNA level (CMO:0002126)	3	35403199	97383526	Rat
631832	Sach1	Saccharin preference QTL 1	2.7	0.02	consumption behavior trait (VT:0002069)	calculated saccharin drink intake volume (CMO:0001600)	3	47904172	92904172	Rat
2313079	Bss73	Bone structure and strength QTL 73	1.5		tibia size trait (VT:0100001)	tibia midshaft cross-sectional area (CMO:0001717)	3	47904172	70710963	Rat
1558657	Cm43	Cardiac mass QTL 43	6.6	3e-08	heart mass (VT:0007028)	heart wet weight (CMO:0000069)	3	22677150	50766390	Rat
2313076	Bss74	Bone structure and strength QTL 74	2	0.0001	tibia strength trait (VT:1000284)	tibia total energy absorbed before break (CMO:0001736)	3	47904172	70710963	Rat
631568	Bp92	Blood pressure QTL 92	2.2	0.005	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	15272348	60272348	Rat
6893363	Bw105	Body weight QTL 105	2.6	0.0036	body mass (VT:0001259)	body weight (CMO:0000012)	3	5766390	50766390	Rat
1300169	Bp177	Blood pressure QTL 177	2.96		arterial blood pressure trait (VT:2000000)	blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)	3	36425116	81425116	Rat
9590286	Uminl1	Urine mineral level QTL 1	3.5	0.001	urine mineral amount (VT:0015086)	urine electrolyte level (CMO:0000593)	3	48657744	93657744	Rat
631831	Alc8	Alcohol consumption QTL 8	2.7		consumption behavior trait (VT:0002069)	calculated ethanol drink intake rate (CMO:0001615)	3	37796919	53640235	Rat
1558647	Cm46	Cardiac mass QTL 46	5.4	0.0000055	heart mass (VT:0007028)	heart wet weight (CMO:0000069)	3	22677150	50766390	Rat
4889966	Bss95	Bone structure and strength QTL 95	4.4		tibia area (VT:1000281)	tibia-fibula cross-sectional area (CMO:0001718)	3	37796919	82796919	Rat
2292615	Ept17	Estrogen-induced pituitary tumorigenesis QTL 17	6.7		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	3	6556347	51556347	Rat
2313093	Bmd77	Bone mineral density QTL 77	2.2	0.0001	tibia mineral mass (VT:1000283)	compact volumetric bone mineral density (CMO:0001730)	3	47904172	70710963	Rat
12879852	Cm93	Cardiac mass QTL 93		0.001	heart right ventricle mass (VT:0007033)	heart right ventricle weight to body weight ratio (CMO:0000914)	3	38708931	67641995	Rat
1558654	Bw56	Body weight QTL 56	4.5	0.0000171	body mass (VT:0001259)	body weight (CMO:0000012)	3	5766390	50766390	Rat
12879853	Am5	Aortic mass QTL 5		0.001	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	3	38708931	67641995	Rat
12879854	Kidm63	Kidney mass QTL 63		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	3	38708931	67641995	Rat
9590136	Scort3	Serum corticosterone level QTL 3	23.37	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	3	48657744	93657744	Rat
1358905	Hrtrt17	Heart rate QTL 17	5.9	0.000014	heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	3	36721849	110333156	Rat
12879849	Bw180	Body weight QTL 180		0.037	body mass (VT:0001259)	body weight (CMO:0000012)	3	38708931	67641995	Rat
12879850	Cm91	Cardiac mass QTL 91		0.001	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	3	38708931	67641995	Rat
2313101	Bmd76	Bone mineral density QTL 76	3.6	0.0001	tibia mineral mass (VT:1000283)	total volumetric bone mineral density (CMO:0001728)	3	47904172	70710963	Rat
12879851	Cm92	Cardiac mass QTL 92		0.001	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	3	38708931	67641995	Rat
731172	Bp151	Blood pressure QTL 151		0.04	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	38708931	67641995	Rat
8694196	Abfw2	Abdominal fat weight QTL 2	16.58	0.001	visceral adipose mass (VT:0010063)	abdominal fat pad weight to body weight ratio (CMO:0000095)	3	48657744	93657744	Rat
1358885	Bp251	Blood pressure QTL 251	3.8		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	1	141509147	Rat
1354597	Kidm13	Kidney mass QTL 13	2.9		kidney mass (VT:0002707)	right kidney wet weight (CMO:0000082)	3	42158111	124558371	Rat
2325840	Bp345	Blood pressure QTL 345		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	38708931	83708931	Rat
8552950	Pigfal12	Plasma insulin-like growth factor 1 level QTL 12	7.3		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	3	48657744	93657744	Rat
631676	Cm8	Cardiac mass QTL 8	7.03	0.0001	aorta mass (VT:0002845)	aorta weight (CMO:0000076)	3	37363734	82363734	Rat
631679	Cm10	Cardiac mass QTL 10	7.34	0.0001	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	3	6556347	51556347	Rat
2290452	Scl56	Serum cholesterol level QTL 56	2.26		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	3	36101403	81101403	Rat
8694386	Bw159	Body weight QTL 159	4.52	0.001	body lean mass (VT:0010483)	lean tissue morphological measurement (CMO:0002184)	3	48657744	93657744	Rat
1354604	Bw36	Body weight QTL 36	2.9		body mass (VT:0001259)	body weight (CMO:0000012)	3	42158111	124558371	Rat
2313049	Bss72	Bone structure and strength QTL 72	2.6	0.0001	tibia area (VT:1000281)	tibia midshaft cross-sectional area (CMO:0001717)	3	47904172	70710963	Rat
2312664	Scl62	Serum cholesterol level QTL 62		0.05	blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	3	37796919	59119581	Rat
1358888	Bp264	Blood pressure QTL 264	4.43		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	5675975	141509147	Rat
1358185	Ept6	Estrogen-induced pituitary tumorigenesis QTL 6	6.7		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	3	6556347	51556347	Rat

Markers in Region

D3Chm57

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	28,441,673 - 28,441,896 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	29,084,404 - 29,084,626	NCBI	Rnor6.0
Rnor_5.0	3	34,290,403 - 34,290,625	UniSTS	Rnor5.0
RGSC_v3.4	3	24,716,708 - 24,716,931	RGD	RGSC3.4
RGSC_v3.4	3	24,716,709 - 24,716,931	UniSTS	RGSC3.4
Celera	3	26,752,816 - 26,753,039	UniSTS
Cytogenetic Map	3	q12	UniSTS

RH138477

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	28,345,611 - 28,345,772 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	28,988,481 - 28,988,641	NCBI	Rnor6.0
Rnor_5.0	3	34,194,565 - 34,194,725	UniSTS	Rnor5.0
RGSC_v3.4	3	24,610,826 - 24,610,986	UniSTS	RGSC3.4
Celera	3	26,658,516 - 26,658,676	UniSTS
RH 3.4 Map	3	316.0	UniSTS
Cytogenetic Map	3	q12	UniSTS

AU048503

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	28,027,265 - 28,027,502 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	28,664,467 - 28,664,699	NCBI	Rnor6.0
Rnor_5.0	3	33,869,147 - 33,869,379	UniSTS	Rnor5.0
RGSC_v3.4	3	24,294,292 - 24,294,524	UniSTS	RGSC3.4
Celera	3	26,342,133 - 26,342,365	UniSTS
Cytogenetic Map	3	q12	UniSTS

AU049602

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	28,128,608 - 28,128,822 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	28,769,795 - 28,770,006	NCBI	Rnor6.0
Rnor_5.0	3	33,975,671 - 33,975,882	UniSTS	Rnor5.0
RGSC_v3.4	3	24,395,895 - 24,396,106	UniSTS	RGSC3.4
Celera	3	26,443,293 - 26,443,504	UniSTS
Cytogenetic Map	3	q12	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
9	11	41	111	91	90	59	25	59	6	210	89	12	91	45	58	31	23	23

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001013917	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001429793	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017591541	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017591542	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017591543	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017591544	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063283268	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC108252	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC079103	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ227834	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ230300	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ231504	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ231838	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ233512	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000003	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000049884 ⟹ ENSRNOP00000043804

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	3	48,399,162 - 49,002,221 (+)	Ensembl
mRatBN7.2 Ensembl	3	27,989,633 - 28,592,716 (+)	Ensembl
Rnor_6.0 Ensembl	3	28,627,084 - 29,236,219 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000094851 ⟹ ENSRNOP00000085484

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	3	48,399,111 - 49,009,754 (+)	Ensembl
mRatBN7.2 Ensembl	3	27,989,633 - 28,600,265 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000098491 ⟹ ENSRNOP00000083116

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	3	48,399,146 - 49,002,213 (+)	Ensembl
mRatBN7.2 Ensembl	3	27,989,633 - 28,592,739 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000119997 ⟹ ENSRNOP00000092419

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	3	48,399,143 - 49,002,194 (+)	Ensembl
mRatBN7.2 Ensembl	3	28,027,704 - 28,592,716 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000128189 ⟹ ENSRNOP00000099545

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	3	48,399,111 - 49,003,207 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000138885 ⟹ ENSRNOP00000103731

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	3	48,382,904 - 49,003,207 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000144789 ⟹ ENSRNOP00000107123

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	3	48,399,163 - 48,945,342 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000149887 ⟹ ENSRNOP00000110476

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	3	48,399,141 - 49,011,378 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000158549 ⟹ ENSRNOP00000112130

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	3	48,399,111 - 49,009,913 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000161034 ⟹ ENSRNOP00000102107

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	3	48,437,219 - 49,003,207 (+)	Ensembl

RefSeq Acc Id:

NM_001013917 ⟹ NP_001013939

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	48,399,156 - 49,002,213 (+)	NCBI
mRatBN7.2	3	27,989,633 - 28,592,722 (+)	NCBI
Rnor_6.0	3	28,627,084 - 29,236,225 (+)	NCBI
Rnor_5.0	3	33,831,379 - 34,442,272 (+)	NCBI
RGSC_v3.4	3	24,256,620 - 24,389,618 (+)	RGD
Celera	3	26,304,736 - 26,903,806 (+)	RGD

Sequence:

show sequence

CTAAAAGGAGTGGATGGCAGTTTTCATAGCAAGTCATCATGGAGAAAAGGACAAGCTGCAGTGT
GCAGACATCTACGAACTGTGACAACTCTTTGGAAACACTGAATTCTGCCCACCAAGCTACAGGC
GCTGTGCAAATGAGAATCAAAAATGCCAACAGCCACCCAGACAGGCAGAGCCAAACTAAATCCA
TGATCCTCACCGACGCTGGGAAGGTCACTGAACCTATTTCCCGGCACAGAAGGAATCATTCACA
GCATGTGCTGAAAGATGTCATTCCACCACTAGAACATCCAATGGTCGAAAAAGAAGGGTATCTT
CAAAAAGCCAAAATTGCAGATGGAGGAAAGAAACTAAGGAAAAACTGGTCTACTTCCTGGATTG
TTCTCTCTGGCCGAAAACTTGAATTTTACAAAGACCCCAAGCAGCAAGCTCTCCCTAACGTGAA
ACCCAGGCCAAATGCAGAAAGCGTGGATTTGTGTGGAGCACACATAGAATGGGCGGCCAAAGAC
AAATCAAGCAAAAAGAGTGTCTTTCAGATCACAACAGCATCAGGAAATGAGTTCCTTCTCCAGT
CAGATATTGACTTCCTCATATTGGATTGGTTCCATGCTATCAAAAATGCAATTGACAGATTGCC
AAAGAATCCAAGTTTCGGATCCCTGGAGTTGTTCAGTTTCCAGAGATCTTCAAGCTCTGAACAG
CCGAGTCATTGCCACATCGATAGAAAAGAACAGAAACCAGAAAACAGGAAGTCCTTCATGTTCA
GACTGCACCACAGCGTTTCGGATACAAGTGACAAGAACCGCGTGAAGAGCAGACTGAAGAAGTT
CATCTCCCGAAGACCTTCTCTGAAAACTTTGCAAGAAAAGGGAATCATTAAAGATCAAATTTTT
GGCTCTCATCTGCACACAGTGTGTGAACGAGAACATTCCACAGTTCCATGGTTTGTAAAGCAAT
GCATTGAAGCTGTTGAAAAAAGAGGCCTAGAAGTTGATGGAATTTATCGAGTCAGTGGCAATCT
TGCAACAATCCAGAAGTTAAGGTTTATCGTCAACCAAGAAGAGAAGCTGAATTTGGATGACAGC
CAGTGGGAGGACATCCACGTCGTCACCGGAGCACTGAAGATGTTTTTCCGGGAGCTGTCTGAGC
CGCTCTTCCCTTACAGTTTCTTTGAGCGGTTTGTGGAGGCGATCAAAAAACAAGACAGTGATGC
AAAAATTGAAACTATGAAGTCTCTGGTAAAAAGTCTCCCTCCACCAAATCATGACACCATGAAA
ATCCTCTTCGGACATCTAACCAAGATAGTGGCCAAAGCTGCCCAGAATCTCATGTCCACACAAA
GCTTGGGGATTGTATTTGGACCCACCCTTCTGCGAGCAGAAAATGAGTCGGGGAACGTGGCTGT
ACACATGGTATACCAAAACCAGGTAGCCGAGTTCATGCTGACTGAGTATGACAAGATCTTCAGC
TCAGAGGAAGACTGACAGACGAGGCGAGCTACTGCGTGTGTTCACATCTGTCTTGATGCCTAAT
ATTTTTACATTTCTGTAAACATATTTCTGAAATATTTCTTCCTTCCAAGCGACAGATGCTTCAT
TTTGTGAAAACTTAGTGATGATTTTGTATTTAAGTTCCAAACATTCGAATAAAATAAATGACAA
TAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_017591541 ⟹ XP_017447030

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	48,398,851 - 48,995,533 (+)	NCBI
mRatBN7.2	3	27,989,368 - 28,588,906 (+)	NCBI
Rnor_6.0	3	28,626,987 - 29,229,547 (+)	NCBI

Sequence:

show sequence

CCTTTTTTTTCTCAAGTACTGAAATTAAGCAGCAACTATCACAGGCCTCCCCATAGGACACGTG
ACCTTACTCTTTTCCGTTTTGTTGAAAGAGTCACTAAAAGGAGTGGATGGCAGTTTTCATAGCA
AGTCATCATGGAGAAAAGGACAAGCTGCAGTGTGCAGACATCTACGAACTGTGACAACTCTTTG
GAAACACTGAATTCTGCCCACCAAGCTACAGGCGCTGTGCAAATGAGAATCAAAAATGCCAACA
GCCACCCAGACAGGCAGAGCCAAACTAAATCCATGATCCTCACCGACGCTGGGAAGGTCACTGA
ACCTATTTCCCGGCACAGAAGGAATCATTCACAGCATGTGCTGAAAGATGTCATTCCACCACTA
GAACATCCAATGGTCGAAAAAGAAGGGTATCTTCAAAAAGCCAAAATTGCAGATGGAGGAAAGA
AACTAAGGAAAAACTGGTCTACTTCCTGGATTGTTCTCTCTGGCCGAAAACTTGAATTTTACAA
AGACCCCAAGCAGCAAGCTCTCCCTAACGTGAAACCCAGGCCAAATGCAGAAAGCGTGGATTTG
TGTGGAGCACACATAGAATGGGCGGCCAAAGACAAATCAAGCAAAAAGAGTGTCTTTCAGATCA
CAACAGCATCAGGAAATGAGTTCCTTCTCCAGTCAGATATTGACTTCCTCATATTGGATTGGTT
CCATGCTATCAAAAATGCAATTGACAGATTGCCAAAGAATCCAAGTTTCGGATCCCTGGAGTTG
TTCAGTTTCCAGAGATCTTCAAGCTCTGAACAGCCGAGTCATTGCCACATCGATAGAAAAGAAC
AGAAACCAGAAAACAGGAAGTCCTTCATGTTCAGACTGCACCACAGCGTTTCGGATACAAGTGA
CAAGAACCGCGTGAAGAGCAGACTGAAGAAGTTCATCTCCCGAAGACCTTCTCTGAAAACTTTG
CAAGAAAAGGGAATCATTAAAGATCAAATTTTTGGCTCTCATCTGCACACAGTGTGTGAACGAG
AACATTCCACAGTTCCATGGTTTGTAAAGCAATGCATTGAAGCTGTTGAAAAAAGAGGCCTAGA
AGTTGATGGAATTTATCGAGTCAGTGGCAATCTTGCAACAATCCAGAAGTTAAGGTTTATCGTC
AACCAAGAAGAGAAGCTGAATTTGGATGACAGCCAGTGGGAGGACATCCACGTCGTCACCGGAG
CACTGAAGATGTTTTTCCGGGAGCTGTCTGAGCCGCTCTTCCCTTACAGTTTCTTTGAGCGGTT
TGTGGAGGCGATCAAAAAACAAGACAGTGATGCAAAAATTGAAACTATGAAGTCTCTGGTAAAA
AGTCTCCCTCCACCAAATCATGACACCATGAAAATCCTCTTCGGACATCTAACCAAGATGGCTA
GATCCTGGGACACAAAATCTATGGACGGGGAAGACTGTTTGGGTGAGTTTCTACTGGGTTTTAC
TCACTGCAATCATTTCAACATTCAGCATAACACTTGGTCCATGGTCGATTATTAAGGATTACAC
TTTTAAAATTAAGGTCCTGGGTGAGTATAGCTCAATGGGTAAATAAAGTATTTGCTGCAGAAAT
ATAAGGTCCTGAGTTCAAATTCCCAGTGCCCGTGTAAACCCAGGTGTGACAGTGTGAGCATCTA
GAACCCAAGTGTTCCCATGGTGACATGGAAAACAGAGACAGGATGCCCAGATGCTCCTGGGGCA
GCCAGCTTCAAAGTCGGAAAGGCAAATAGCCAGGTTCCCTTTGTCAAATATGGAGAAAGATGAG
GATCAATTTCCACATGCTCACTGTAGCACACACGTGCATACGTGCCATGCACATGCACATGCAC
ATGCACAGACACACAAAGAATATACCCACAAAATGTTCACACTTTCTCTAATAGGATGCATTCC
CATATCATTAAAGAAAAGCTAAAGTTTCTCATCAGATATGCTTTGAAATGGCTGGCATTCGTGG
GGCACTGTGATTAGCACGGTGAAGTCGTTCACCAACAGCATCGCTGGTATTCCCTTCTGCTACC
TGAGAGTGGCGGGGCCGTGGCTCTATTTACCATTGCTGATATCCTTCAAAATACGTAACTAGAA
ATAAGTCGTTAATTGAAGCCCAGGGCTTTTCGCTTTTAAATCTGCTTTCCTGACATCCTATTAG
ACAATTTGAATATTATTTTAAAGGTGCTTTGGACTATCTCTGTAATGTCTGATCGATAAAAATA
TGAGGCAAGTGAATAATTGAAAGTGTTTCAATCTTCTGAATTGAAATTAATGCAAAGTAGCTCA
A

hide sequence

RefSeq Acc Id:

XM_017591542 ⟹ XP_017447031

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	48,398,851 - 49,002,213 (+)	NCBI
mRatBN7.2	3	27,989,371 - 28,592,468 (+)	NCBI
Rnor_6.0	3	28,626,988 - 29,235,933 (+)	NCBI

Sequence:

show sequence

CTTTTTTTTCTCAAGTACTGAAATTAAGCAGCAACTATCACAGGCCTCCCCATAGGACACGTGA
CCTTACTCTTTTCCGTTTTGTTGAAAGAGTCACTAAAAGGAGTGGATGGCAGTTTTCATAGCAA
GTCATCATGGAGAAAAGGACAAGCTGCAGTGTGCAGACATCTACGAACTGTGACAACTCTTTGG
AAACACTGAATTCTGCCCACCAAGCTACAGGCGCTGTGCAAATGAGAATCAAAAATGCCAACAG
CCACCCAGACAGGCAGAGCCAAACTAAATCCATGATCCTCACCGACGCTGGGAAGGTCACTGAA
CCTATTTCCCGGCACAGAAGGAATCATTCACAGCATGTGCTGAAAGATGTCATTCCACCACTAG
AACATCCAATGGTCGAAAAAGAAGGGTATCTTCAAAAAGCCAAAATTGCAGATGGAGGAAAGAA
ACTAAGGAAAAACTGGTCTACTTCCTGGATTGTTCTCTCTGGCCGAAAACTTGAATTTTACAAA
GACCCCAAGCAGCAAGCTCTCCCTAACGTGAAACCCAGGCCAAATGCAGAAAGCGTGGATTTGT
GTGGAGCACACATAGAATGGGCGGCCAAAGACAAATCAAGCAAAAAGAGTGTCTTTCAGATCAC
AACAGCATCAGGAAATGAGTTCCTTCTCCAGTCAGATATTGACTTCCTCATATTGGATTGGTTC
CATGCTATCAAAAATGCAATTGACAGATTGCCAAAGAATCCAAGTTTCGGATCCCTGGAGTTGT
TCAGTTTCCAGAGATCTTCAAGCTCTGAACAGCCGAGTCATTGCCACATCGATAGAAAAGAACA
GAAACCAGAAAACAGGAAGTCCTTCATGTTCAGACTGCACCACAGCGTTTCGGATACAAGTGAC
AAGAACCGCGTGAAGAGCAGACTGAAGAAGTTCATCTCCCGAAGACCTTCTCTGAAAACTTTGC
AAGAAAAGGGAATCATTAAAGATCAAATTTTTGGCTCTCATCTGCACACAGTGTGTGAACGAGA
ACATTCCACAGTTCCATGGTTTGTAAAGCAATGCATTGAAGCTGTTGAAAAAAGAGGCCTAGAA
GTTGATGGAATTTATCGAGTCAGTGGCAATCTTGCAACAATCCAGAAGTTAAGGTTTATCGTCA
ACCAAGAAGAGAAGCTGAATTTGGATGACAGCCAGTGGGAGGACATCCACGTCGTCACCGGAGC
ACTGAAGATGTTTTTCCGGGAGCTGTCTGAGCCGCTCTTCCCTTACAGTTTCTTTGAGCGGTTT
GTGGAGGCGATCAAAAAACAAGACAGTGATGCAAAAATTGAAACTATGAAGTCTCTGGTAAAAA
GTCTCCCTCCACCAAATCATGACACCATGAAAATCCTCTTCGGACATCTAACCAAGATGGCTAG
ATCCTGGGACACAAAATCTATGGACGGGGAAGACTGTTTGGGATAGTGGCCAAAGCTGCCCAGA
ATCTCATGTCCACACAAAGCTTGGGGATTGTATTTGGACCCACCCTTC

hide sequence

RefSeq Acc Id:

XM_017591544 ⟹ XP_017447033

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	48,398,851 - 48,893,382 (+)	NCBI
mRatBN7.2	3	27,989,373 - 28,483,885 (+)	NCBI
Rnor_6.0	3	28,626,991 - 29,129,595 (+)	NCBI

Sequence:

show sequence

TTTTTTCTCAAGTACTGAAATTAAGCAGCAACTATCACAGGCCTCCCCATAGGACACGTGACCT
TACTCTTTTCCGTTTTGTTGAAAGAGTCACTAAAAGGAGTGGATGGCAGTTTTCATAGCAAGTC
ATCATGGAGAAAAGGACAAGCTGCAGTGTGCAGACATCTACGAACTGTGACAACTCTTTGGAAA
CACTGAATTCTGCCCACCAAGCTACAGGCGCTGTGCAAATGAGAATCAAAAATGCCAACAGCCA
CCCAGACAGGCAGAGCCAAACTAAATCCATGATCCTCACCGACGCTGGGAAGGTCACTGAACCT
ATTTCCCGGCACAGAAGGAATCATTCACAGCATGTGCTGAAAGATGTCATTCCACCACTAGAAC
ATCCAATGGTCGAAAAAGAAGGGTATCTTCAAAAAGCCAAAATTGCAGATGGAGGAAAGAAACT
AAGGAAAAACTGGTCTACTTCCTGGATTGTTCTCTCTGGCCGAAAACTTGAATTTTACAAAGAC
CCCAAGCAGCAAGCTCTCCCTAACGTGAAACCCAGGCCAAATGCAGAAAGCGTGGATTTGTGTG
GAGCACACATAGAATGGGCGGCCAAAGACAAATCAAGCAAAAAGAGTGTCTTTCAGATCACAAC
AGCATCAGGAAATGAGTTCCTTCTCCAGTCAGATATTGACTTCCTCATATTGGATTGGTTCCAT
GCTATCAAAAATGCAATTGACAGATTGCCAAAGAATCCAAGTTTCGGATCCCTGGAGTTGTTCA
GTTTCCAGAGATCTTCAAGCTCTGAACAGCCGAGTCATTGCCACATCGATAGAAAAGAACAGAA
ACCAGAAAACAGGAAGTCCTTCATGTTCAGACTGCACCACAGCGTTTCGGATACAAGTGACAAG
AACCGCGTGAAGAGCAGACTGAAGAAGTTCATCTCCCGAAGACCTTCTCTGAAAACTTTGCAAG
AAAAGGGAATCATTAAAGATCAAATTTTTGGCTCTCATCTGCACACAGTGTGTGAACGAGAACA
TTCCACAGTTCCATGGTTTGTAAAGCAATGCATTGAAGCTGTTGAAAAAAGAGGCCTAGAAGTT
GATGGAATTTATCGAGTCAGTGGCAATCTTGCAACAATCCAGAAGTTAAGGTTTATCGTCAACC
AAGAAGAGAAGCTGAATTTGGATGACAGCCAGTGGGAGGACATCCACGTCGTCACCGGAGCACT
GAAGATGTTTTTCCGGGAGCTGTCTGAGCCGCTCTTCCCTTACAGTTTCTTTGAGCGGTTTGTG
GAGGCGATCACTACATAGGAAGAGTGAAATTCTCCCTCCTATGACACATGGATGCCATGACATC
TTGCTTCAAGCCAAGGTATGTGCATTTTGAGGGAAATACTGAAAAGCGGGAGGTACAGTCCCTG
GTTGAGTAAATAATGACTTAATGTGATCCAGCTGGACAGTGGGCAAAGAAGACAATAAACGTTC
CACGGAAGAGACGTGATAGATCAGGGTTGGCTCCATAAAGGAGACAGCAGGGTATGGGGTGCTT
GAGATGTCAGTCAGAGAATGAGCACGTGACCCCACCCCAAGACGAATACAGTTGAGGGGAAAGG
GAGGTATCTGGTTGGAGGAAGCAAAGAGTTTTAGGGATAAACAGTAGGAGATGAGGGAGAACAG
ATACAGTTAATCCAGCATTATAAATTCCAAGTAGGCACACCCTGAAATTTTCTAATTCAATTCT
CTGTCCTGTTGCCTAGCAGAGGTCACTCCATAGAAAAGGCAAATATTTGACCAGCAAATTAACT
AATGATCTACGGAGATTTTAATAGTATACCTGGTTTAAATCTTATCCAATGCACAATAAAAACC
CTATTATAGGTTTTTGAGGAAAGTGGTCAAAAATTGAAACCTATGCTTTTGAGAAAATAATCTT
AATGGTAATTGACAGGATAGTTTAACGGGGTAAAGGAAACACAAAATTCCAACAAGCATTCCCC
TTGGCTATTATCCAAAGATGACTTAAGTATATTTTCTTTGCACACTGTTGGGACAAAATAGCCA
ACGAAATCAACTTAAAGAAGGAAAGAATTATCTGGGCTCACAGATCACGGATATAGACCAGCAT
GATAGGAAAGTCCTCGCTTTACGAACATGTAAAGTCTGGTCACACTGCATCTGCAGTCAGGACC
AGCGATATGTACGTGGTGTTCATCTGACCTTTTCCTTCCTATGTGGACTAGGACCCCAGCCCAT
GAAACAGTACCACTTGCATTCAGATTGAGTATTTCAACCTCAAGTAGCCCAATATAGGGAATTC
TTAACATGTATGCCCTAGGTTTTGTTTCCAAGCTAATTCTAAATTCCATCACAATAAGTGACTT
TATTACTCTGTGTTCTATCTGTGCATTTTCTTCATAGGATTCACACACAGCTTCCCAAAGCCAT
GCCAAATGCATATGTGTTCCCTGAATATATGCTGGAATAAGCTACTTAGATATAAGTCAAAACA
TAAGGCTTCGAGCATCTGAATCACCTGTGATCTTATTACACACATGCATCCTCCCATCCAACAC
CATACCTTTGGAAAGACGATCTGTAGAAACAGAGCTCAAAGCTCCATGTTAGTCCAAGCTCTCC
TGATTATCTGTATGCAAAAGTTTAAGGAGCGCCTTATTTCTAAGTGGTGGCTAATCTATTCACA
AACCTTAAAATCTTTCGTAACTTTGAAAATTAAGAATTACCGAACATCAAAAGTTTTAAGTACA
TTATGCAAAGTTAAGTGTACATAAAAAGAGCCAAGTATGTAAACATAATAGAAGATAAAAGTTA
TGATGGTTTAGTGTAATTTGGAAAACATGATGAGAGAGGAACATAGGTGAGCTTCAGTACGAAC
CGGACATCCACATAGTGGTGTGATTGGAATGGGGAGCAAATGCTAACAGGCTGGAGGGAGCCTA
GCAAGACCTAGTGTGTCAGATCCTTCTCTGTCTCCTGACACAGGGAAAGACAGACAGCACATAA
GGGCCTCAAAGAGAGGAGGAAGAAAATGAAGGTTAGTCCTAAGTTTTGTGGTCGGCATTGGGAA
ACATAACATAAGGAAAAGGATACTGGATTTCATGACTCTCTTTGTTAATGAACAGAGTGGGGAA
AGAAAAAGGCCAGAGACAACTTCTTGCTTCTGAGGCCATATGCTTACACGAAACTGCCAAACTG
GATGTGTCCGGAACCCAGAATAGCCATTAAGCCATCATTCTCAGCACTACAAAGTCACTCCAGC
ATCACTCAGCTGAAGTTCTGTAACTATGAGCATGTTGAGCAATCAGAAGCTGAATGTTATCAGA
AAAATGTCTTTGGGGAAATCGGTGATGCTGTACAATCTATAGCTTCATAGCAGAGCAGTATGCT
CACCACAGGGTTGGAAATGCCTAAAAGTGACTTTGTCCATATATTAATTGCTATACATATTAAA
GCTATGTGAGACTCAGTCCTCAAGAGCCCGAGGATGAAAATATTAATAAGCTGCCATCATCCTG
CAGCACAGACTTGTGTTTCAATGGCAACTCCATCTATTAGTCGCCTATCCCAAGCCCAGGATGG
AGAACAATTTGCTCACAGACTCCTTCGCTCTATGCTAAGTGCTGTCCTTCGTGCAGGGAGCATA
TGTGTAGAAAGCTGCTGTGGTTTGTCAAGGACATAGAATGGAACGTTCCTATTTCACTGGGGCA
TAGTTATTAATTCCTATTAAAA

hide sequence

RefSeq Acc Id:

XM_063283268 ⟹ XP_063139338

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	48,382,945 - 49,002,213 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001013939	(Get FASTA)	NCBI Sequence Viewer
	NP_001416722	(Get FASTA)	NCBI Sequence Viewer
	XP_017447030	(Get FASTA)	NCBI Sequence Viewer
	XP_017447031	(Get FASTA)	NCBI Sequence Viewer
	XP_017447033	(Get FASTA)	NCBI Sequence Viewer
	XP_063139338	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH79103	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000043804.3
	ENSRNOP00000083116
	ENSRNOP00000099545
	ENSRNOP00000103731
GenBank Protein	Q6AYC5	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_001013939 ⟸ NM_001013917

- UniProtKB:

Q6AYC5 (UniProtKB/Swiss-Prot), A0A8I6AHH5 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MEKRTSCSVQTSTNCDNSLETLNSAHQATGAVQMRIKNANSHPDRQSQTKSMILTDAGKVTEPI
SRHRRNHSQHVLKDVIPPLEHPMVEKEGYLQKAKIADGGKKLRKNWSTSWIVLSGRKLEFYKDP
KQQALPNVKPRPNAESVDLCGAHIEWAAKDKSSKKSVFQITTASGNEFLLQSDIDFLILDWFHA
IKNAIDRLPKNPSFGSLELFSFQRSSSSEQPSHCHIDRKEQKPENRKSFMFRLHHSVSDTSDKN
RVKSRLKKFISRRPSLKTLQEKGIIKDQIFGSHLHTVCEREHSTVPWFVKQCIEAVEKRGLEVD
GIYRVSGNLATIQKLRFIVNQEEKLNLDDSQWEDIHVVTGALKMFFRELSEPLFPYSFFERFVE
AIKKQDSDAKIETMKSLVKSLPPPNHDTMKILFGHLTKIVAKAAQNLMSTQSLGIVFGPTLLRA
ENESGNVAVHMVYQNQVAEFMLTEYDKIFSSEED

hide sequence

RefSeq Acc Id:	XP_017447030 ⟸ XM_017591541
- Peptide Label:	isoform X2
- UniProtKB:	A0A8I5ZZB5 (UniProtKB/TrEMBL)
- Sequence:	show sequence MEKRTSCSVQTSTNCDNSLETLNSAHQATGAVQMRIKNANSHPDRQSQTKSMILTDAGKVTEPI SRHRRNHSQHVLKDVIPPLEHPMVEKEGYLQKAKIADGGKKLRKNWSTSWIVLSGRKLEFYKDP KQQALPNVKPRPNAESVDLCGAHIEWAAKDKSSKKSVFQITTASGNEFLLQSDIDFLILDWFHA IKNAIDRLPKNPSFGSLELFSFQRSSSSEQPSHCHIDRKEQKPENRKSFMFRLHHSVSDTSDKN RVKSRLKKFISRRPSLKTLQEKGIIKDQIFGSHLHTVCEREHSTVPWFVKQCIEAVEKRGLEVD GIYRVSGNLATIQKLRFIVNQEEKLNLDDSQWEDIHVVTGALKMFFRELSEPLFPYSFFERFVE AIKKQDSDAKIETMKSLVKSLPPPNHDTMKILFGHLTKMARSWDTKSMDGEDCLGEFLLGFTHC NHFNIQHNTWSMVDY hide sequence

RefSeq Acc Id:

XP_017447031 ⟸ XM_017591542

- Peptide Label:

isoform X3

- Sequence:

show sequence

MEKRTSCSVQTSTNCDNSLETLNSAHQATGAVQMRIKNANSHPDRQSQTKSMILTDAGKVTEPI
SRHRRNHSQHVLKDVIPPLEHPMVEKEGYLQKAKIADGGKKLRKNWSTSWIVLSGRKLEFYKDP
KQQALPNVKPRPNAESVDLCGAHIEWAAKDKSSKKSVFQITTASGNEFLLQSDIDFLILDWFHA
IKNAIDRLPKNPSFGSLELFSFQRSSSSEQPSHCHIDRKEQKPENRKSFMFRLHHSVSDTSDKN
RVKSRLKKFISRRPSLKTLQEKGIIKDQIFGSHLHTVCEREHSTVPWFVKQCIEAVEKRGLEVD
GIYRVSGNLATIQKLRFIVNQEEKLNLDDSQWEDIHVVTGALKMFFRELSEPLFPYSFFERFVE
AIKKQDSDAKIETMKSLVKSLPPPNHDTMKILFGHLTKMARSWDTKSMDGEDCLG

hide sequence

RefSeq Acc Id:	XP_017447033 ⟸ XM_017591544
- Peptide Label:	isoform X4
- UniProtKB:	A0A8I5ZZB5 (UniProtKB/TrEMBL)
- Sequence:	show sequence MEKRTSCSVQTSTNCDNSLETLNSAHQATGAVQMRIKNANSHPDRQSQTKSMILTDAGKVTEPI SRHRRNHSQHVLKDVIPPLEHPMVEKEGYLQKAKIADGGKKLRKNWSTSWIVLSGRKLEFYKDP KQQALPNVKPRPNAESVDLCGAHIEWAAKDKSSKKSVFQITTASGNEFLLQSDIDFLILDWFHA IKNAIDRLPKNPSFGSLELFSFQRSSSSEQPSHCHIDRKEQKPENRKSFMFRLHHSVSDTSDKN RVKSRLKKFISRRPSLKTLQEKGIIKDQIFGSHLHTVCEREHSTVPWFVKQCIEAVEKRGLEVD GIYRVSGNLATIQKLRFIVNQEEKLNLDDSQWEDIHVVTGALKMFFRELSEPLFPYSFFERFVE AITT hide sequence

Ensembl Acc Id:

ENSRNOP00000043804 ⟸ ENSRNOT00000049884

Ensembl Acc Id:

ENSRNOP00000083116 ⟸ ENSRNOT00000098491

Ensembl Acc Id:

ENSRNOP00000092419 ⟸ ENSRNOT00000119997

Ensembl Acc Id:

ENSRNOP00000085484 ⟸ ENSRNOT00000094851

RefSeq Acc Id:	XP_063139338 ⟸ XM_063283268
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I6AHH5 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000112130 ⟸ ENSRNOT00000158549

Ensembl Acc Id:

ENSRNOP00000110476 ⟸ ENSRNOT00000149887

Ensembl Acc Id:

ENSRNOP00000107123 ⟸ ENSRNOT00000144789

Ensembl Acc Id:

ENSRNOP00000099545 ⟸ ENSRNOT00000128189

Ensembl Acc Id:

ENSRNOP00000103731 ⟸ ENSRNOT00000138885

Ensembl Acc Id:

ENSRNOP00000102107 ⟸ ENSRNOT00000161034

Protein Domains

PH Rho-GAP

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q6AYC5-F1-model_v2	AlphaFold	Q6AYC5	1-482	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13692062

Promoter ID:

EPDNEW_R2587

Type:

initiation region

Name:

Arhgap15_1

Description:

Rho GTPase activating protein 15

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	3	28,627,066 - 28,627,126	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1359304	AgrOrtholog
BioCyc Gene	G2FUF-49850	BioCyc
Ensembl Genes	ENSRNOG00000031168	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000049884.4	UniProtKB/Swiss-Prot
	ENSRNOT00000098491	ENTREZGENE
	ENSRNOT00000128189	ENTREZGENE
	ENSRNOT00000138885	ENTREZGENE
Gene3D-CATH	1.10.555.10	UniProtKB/Swiss-Prot
	2.30.29.30	UniProtKB/Swiss-Prot
IMAGE_CLONE	IMAGE:7125019	IMAGE-MGC_LOAD
InterPro	PH-like_dom_sf	UniProtKB/Swiss-Prot
	PH_domain	UniProtKB/Swiss-Prot
	Rho-GAP	UniProtKB/Swiss-Prot
	Rho_GTPase_activation_prot	UniProtKB/Swiss-Prot
	RhoGAP_dom	UniProtKB/Swiss-Prot
KEGG Report	rno:295635	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:94091	IMAGE-MGC_LOAD
NCBI Gene	295635	ENTREZGENE
PANTHER	RHO GTPASE-ACTIVATING PROTEIN 15	UniProtKB/Swiss-Prot
	RHO/RAC/CDC GTPASE-ACTIVATING PROTEIN	UniProtKB/Swiss-Prot
Pfam	PF00169	UniProtKB/Swiss-Prot
	RhoGAP	UniProtKB/Swiss-Prot
PhenoGen	Arhgap15	PhenoGen
PROSITE	PH_DOMAIN	UniProtKB/Swiss-Prot
	RHOGAP	UniProtKB/Swiss-Prot
RatGTEx	ENSRNOG00000031168	RatGTEx
SMART	RhoGAP	UniProtKB/Swiss-Prot
	SM00233	UniProtKB/Swiss-Prot
Superfamily-SCOP	PH domain-like	UniProtKB/Swiss-Prot
	SSF48350	UniProtKB/Swiss-Prot
UniProt	A0A8I5ZW94	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I5ZZB5	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6AHH5	ENTREZGENE, UniProtKB/TrEMBL
	Q6AYC5	ENTREZGENE, UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2013-05-24	Arhgap15	Rho GTPase activating protein 15	LOC100360213	rho GTPase-activating protein 15-like	Data merged from RGD:2322537	1643240	APPROVED
2010-05-06	LOC100360213	rho GTPase-activating protein 15-like			Symbol and Name status set to provisional	70820	PROVISIONAL
2008-03-04	Arhgap15	Rho GTPase activating protein 15	LOC295635	similar to RIKEN cDNA 5830480G12	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-07-29	LOC295635	similar to RIKEN cDNA 5830480G12			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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