Wdsub1 (WD repeat, sterile alpha motif and U-box domain containing 1) - Rat Genome Database

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Gene: Wdsub1 (WD repeat, sterile alpha motif and U-box domain containing 1) Rattus norvegicus
Analyze
Symbol: Wdsub1
Name: WD repeat, sterile alpha motif and U-box domain containing 1
RGD ID: 1359296
Description: Predicted to enable ubiquitin-protein transferase activity. Predicted to be involved in protein ubiquitination. Orthologous to human WDSUB1 (WD repeat, sterile alpha motif and U-box domain containing 1); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,6-dinitrotoluene; 6-propyl-2-thiouracil.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LOC362137; MGC108920; similar to hypothetical protein FLJ36175; WD repeat, SAM and U-box domain containing 1; WD repeat, SAM and U-box domain-containing protein 1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8364,749,118 - 64,781,525 (-)NCBIGRCr8
mRatBN7.2344,340,415 - 44,370,890 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl344,340,415 - 44,370,891 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx347,696,666 - 47,727,022 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0356,280,233 - 56,310,589 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0354,050,349 - 54,080,704 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0345,924,979 - 45,955,455 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl345,925,008 - 45,955,449 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0351,036,799 - 51,073,466 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4341,572,560 - 41,602,917 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1341,468,954 - 41,499,289 (-)NCBI
Celera342,386,424 - 42,415,974 (-)NCBICelera
Cytogenetic Map3q21NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. null JRS Domain-based curation
2. GOA pipeline RGD automated data pipeline
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:15489334  


Genomics

Comparative Map Data
Wdsub1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8364,749,118 - 64,781,525 (-)NCBIGRCr8
mRatBN7.2344,340,415 - 44,370,890 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl344,340,415 - 44,370,891 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx347,696,666 - 47,727,022 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0356,280,233 - 56,310,589 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0354,050,349 - 54,080,704 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0345,924,979 - 45,955,455 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl345,925,008 - 45,955,449 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0351,036,799 - 51,073,466 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4341,572,560 - 41,602,917 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1341,468,954 - 41,499,289 (-)NCBI
Celera342,386,424 - 42,415,974 (-)NCBICelera
Cytogenetic Map3q21NCBI
WDSUB1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382159,235,798 - 159,286,703 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2159,235,798 - 159,286,703 (-)EnsemblGRCh38hg38GRCh38
GRCh372160,092,309 - 160,143,214 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362159,800,558 - 159,851,309 (-)NCBINCBI36Build 36hg18NCBI36
Build 342159,917,818 - 159,968,570NCBI
Celera2153,706,784 - 153,757,716 (-)NCBICelera
Cytogenetic Map2q24.2NCBI
HuRef2151,978,632 - 152,029,368 (-)NCBIHuRef
CHM1_12160,098,495 - 160,149,376 (-)NCBICHM1_1
T2T-CHM13v2.02159,695,595 - 159,746,544 (-)NCBIT2T-CHM13v2.0
Wdsub1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39259,682,708 - 59,714,700 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl259,682,708 - 59,712,935 (-)EnsemblGRCm39 Ensembl
GRCm38259,852,364 - 59,882,620 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl259,852,364 - 59,882,591 (-)EnsemblGRCm38mm10GRCm38
MGSCv37259,690,421 - 59,720,663 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36259,653,203 - 59,683,423 (-)NCBIMGSCv36mm8
Celera261,547,996 - 61,578,237 (-)NCBICelera
Cytogenetic Map2C1.1NCBI
cM Map234.14NCBI
Wdsub1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495544914,301,798 - 14,348,735 (+)NCBIChiLan1.0ChiLan1.0
WDSUB1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21361,923,297 - 61,974,822 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B61,938,730 - 61,990,233 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B46,523,789 - 46,575,379 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B163,898,555 - 163,949,053 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B163,898,555 - 163,949,053 (-)Ensemblpanpan1.1panPan2
WDSUB1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1365,024,832 - 5,073,448 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl365,024,838 - 5,072,660 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha365,163,963 - 5,212,566 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0365,147,634 - 5,196,280 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl365,147,638 - 5,195,807 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1365,165,806 - 5,214,445 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0365,208,453 - 5,257,031 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0365,251,126 - 5,299,744 (-)NCBIUU_Cfam_GSD_1.0
Wdsub1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303122,191,055 - 122,231,300 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493646919,386,300 - 19,426,265 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493646919,386,431 - 19,427,349 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
WDSUB1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1566,166,450 - 66,239,190 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11566,165,201 - 66,239,203 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
WDSUB1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11044,619,307 - 44,671,975 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1044,618,261 - 44,671,900 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666040154,893,120 - 154,942,096 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Wdsub1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247326,372,366 - 6,415,675 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247326,372,413 - 6,415,943 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Wdsub1
338 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:140
Count of miRNA genes:110
Interacting mature miRNAs:116
Transcripts:ENSRNOT00000008168
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2290452Scl56Serum cholesterol level QTL 562.26blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)3191609953Rat
10401810Kidm53Kidney mass QTL 53kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)3822719447233430Rat
70191BpQTLcluster4Blood pressure QTL cluster 43arterial blood pressure trait (VT:2000000)absolute change in mean arterial blood pressure (CMO:0000533)31077870450302886Rat
70191BpQTLcluster4Blood pressure QTL cluster 43arterial blood pressure trait (VT:2000000)absolute change in systolic blood pressure (CMO:0000607)31077870450302886Rat
1358905Hrtrt17Heart rate QTL 175.90.000014heart pumping trait (VT:2000009)heart rate (CMO:0000002)31086191289878372Rat
1358885Bp251Blood pressure QTL 2513.8arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)314489145121056321Rat
1358888Bp264Blood pressure QTL 2644.43arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)314489145121056321Rat
2298542Neuinf11Neuroinflammation QTL 113.9nervous system integrity trait (VT:0010566)spinal cord complement component 1, q subcomponent, B chain mRNA level (CMO:0002126)31500542276927699Rat
631676Cm8Cardiac mass QTL 87.030.0001aorta mass (VT:0002845)aorta weight (CMO:0000076)31695470861954708Rat
731172Bp151Blood pressure QTL 1510.04arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)31831145447233430Rat
12879849Bw180Body weight QTL 1800.037body mass (VT:0001259)body weight (CMO:0000012)31831145447233430Rat
12879850Cm91Cardiac mass QTL 910.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)31831145447233430Rat
12879851Cm92Cardiac mass QTL 920.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)31831145447233430Rat
12879852Cm93Cardiac mass QTL 930.001heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)31831145447233430Rat
12879853Am5Aortic mass QTL 50.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)31831145447233430Rat
12879854Kidm63Kidney mass QTL 630.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)31831145447233430Rat
10450804Scl70Serum cholesterol level QTL 704.70.001blood LDL cholesterol amount (VT:0000181)blood low density lipoprotein cholesterol level (CMO:0000053)32071409065714090Rat
10450794Scl69Serum cholesterol level QTL 696.30.001blood LDL cholesterol amount (VT:0000181)blood low density lipoprotein cholesterol level (CMO:0000053)32071409065714090Rat
2313049Bss72Bone structure and strength QTL 722.60.0001tibia area (VT:1000281)tibia midshaft cross-sectional area (CMO:0001717)32749462150302886Rat
2313076Bss74Bone structure and strength QTL 7420.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)32749462150302886Rat
2313079Bss73Bone structure and strength QTL 731.5tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)32749462150302886Rat
2313093Bmd77Bone mineral density QTL 772.20.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)32749462150302886Rat
2313101Bmd76Bone mineral density QTL 763.60.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)32749462150302886Rat
2302055Pia30Pristane induced arthritis QTL 303.50.001blood autoantibody amount (VT:0003725)serum immunoglobulin M-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002111)32793691972936919Rat
9590286Uminl1Urine mineral level QTL 13.50.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)32824968773249687Rat
8694196Abfw2Abdominal fat weight QTL 216.580.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)32824968773249687Rat
8694386Bw159Body weight QTL 1594.520.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)32824968773249687Rat
8552950Pigfal12Plasma insulin-like growth factor 1 level QTL 127.3blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)32824968773249687Rat
9590136Scort3Serum corticosterone level QTL 323.370.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)32824968773249687Rat
2303593Gluco46Glucose level QTL 463blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)32846857173468571Rat
1354590Despr11Despair related QTL 110.000031locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)32846857173468571Rat
737818Hcar12Hepatocarcinoma resistance QTL 122.6liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)329463235118376539Rat
61419Cia11Collagen induced arthritis QTL 115.6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)33035677398535386Rat
61356Bp37Blood pressure QTL 373blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)33068464275684642Rat
631647Bp122Blood pressure QTL 1226.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)33068464275684642Rat
70216Cm14Cardiac mass QTL 142.1heart mass (VT:0007028)heart wet weight (CMO:0000069)331172320163586636Rat
11565451Bw177Body weight QTL 1770.002body mass (VT:0001259)body weight (CMO:0000012)33142640370668733Rat
11565452Kidm57Kidney mass QTL 570.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)33142640370668733Rat
12879866Cm94Cardiac mass QTL 940.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)33142640370668733Rat
12879867Cm95Cardiac mass QTL 950.047heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)33142640370668733Rat
12879868Am6Aortic mass QTL 60.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)33142640370668733Rat
2301400Cm68Cardiac mass QTL 680.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)33142640370668733Rat
1300169Bp177Blood pressure QTL 1772.96arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)33370334761017857Rat
1354589Bw31Body weight QTL 313.3body mass (VT:0001259)body weight (CMO:0000012)33370334778196190Rat
1354604Bw36Body weight QTL 362.9body mass (VT:0001259)body weight (CMO:0000012)333703347104104347Rat
10450852Stl33Serum triglyceride level QTL 333.40.05blood LDL triglyceride amount (VT:0010699)blood lipoprotein triglyceride level (CMO:0002685)33819223350749747Rat
10450816Scl75Serum cholesterol level QTL 754.40.001blood LDL cholesterol amount (VT:0000181)blood low density lipoprotein cholesterol level (CMO:0000053)33819223350749747Rat
10450813Scl74Serum cholesterol level QTL 745.80.001blood LDL cholesterol amount (VT:0000181)blood low density lipoprotein cholesterol level (CMO:0000053)33819223350749747Rat
1358362Srcrt2Stress Responsive Cort QTL 22.78blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)338192233133483320Rat
738019Anxrr10Anxiety related response QTL 103.9exploratory behavior trait (VT:0010471)number of entries into a discrete space in an experimental apparatus (CMO:0000960)33851780383517803Rat
4889975Bmd81Bone mineral density QTL 814.3tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)33871036550302886Rat
634317Bw117Body weight QTL 1173.58abdominal fat pad mass (VT:1000711)abdominal fat pad weight to body weight ratio (CMO:0000095)33945463753296578Rat
2302276Bw82Body weight QTL 824.32body mass (VT:0001259)body weight (CMO:0000012)33945463762951183Rat
1331777Bw24Body weight QTL 243.503body mass (VT:0001259)body weight (CMO:0000012)33945463789115240Rat
1331795Rf30Renal function QTL 303.708urine potassium amount (VT:0010539)urine potassium level (CMO:0000128)33945463789115240Rat
1354597Kidm13Kidney mass QTL 132.9kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)341874578104104347Rat
2301970Bw81Body weight QTL 815.19body mass (VT:0001259)body weight (CMO:0000012)341874578155617519Rat
2301971Cm71Cardiac mass QTL 714.63heart left ventricle mass (VT:0007031)heart left ventricle weight (CMO:0000776)341874578155617519Rat
1300178Hrtrt4Heart rate QTL 43.74heart pumping trait (VT:2000009)heart rate (CMO:0000002)34382736490905114Rat
1581503Cm58Cardiac mass QTL 582.70.05heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)343827364121056321Rat
1559282Emca5Estrogen-induced mammary cancer QTL 53.9mammary gland integrity trait (VT:0010552)percentage of study population developing mammary tumors during a period of time (CMO:0000948)343827364169034231Rat


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 27 6 2 29 29 27 11
Low 3 16 51 41 17 41 8 11 45 6 14 8
Below cutoff

Sequence


RefSeq Acc Id: ENSRNOT00000008168   ⟹   ENSRNOP00000008168
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl344,340,415 - 44,370,891 (-)Ensembl
Rnor_6.0 Ensembl345,925,008 - 45,955,449 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000095031   ⟹   ENSRNOP00000077591
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl344,340,556 - 44,370,890 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000103522   ⟹   ENSRNOP00000093873
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl344,343,272 - 44,370,891 (-)Ensembl
RefSeq Acc Id: NM_001014179   ⟹   NP_001014201
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8364,749,237 - 64,779,594 (-)NCBI
mRatBN7.2344,340,534 - 44,370,890 (-)NCBI
Rnor_6.0345,925,098 - 45,955,455 (-)NCBI
Rnor_5.0351,036,799 - 51,073,466 (-)NCBI
RGSC_v3.4341,572,560 - 41,602,917 (-)RGD
Celera342,386,424 - 42,415,974 (-)RGD
Sequence:
RefSeq Acc Id: XM_006234211   ⟹   XP_006234273
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8364,749,118 - 64,781,525 (-)NCBI
mRatBN7.2344,340,415 - 44,370,859 (-)NCBI
Rnor_6.0345,924,979 - 45,955,452 (-)NCBI
Rnor_5.0351,036,799 - 51,073,466 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017591892   ⟹   XP_017447381
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8364,749,118 - 64,781,525 (-)NCBI
mRatBN7.2344,340,415 - 44,370,886 (-)NCBI
Rnor_6.0345,924,979 - 45,955,451 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039105392   ⟹   XP_038961320
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8364,761,797 - 64,781,525 (-)NCBI
mRatBN7.2344,353,091 - 44,370,848 (-)NCBI
RefSeq Acc Id: XM_063284111   ⟹   XP_063140181
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8364,749,118 - 64,781,525 (-)NCBI
RefSeq Acc Id: XM_063284112   ⟹   XP_063140182
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8364,761,797 - 64,781,525 (-)NCBI
RefSeq Acc Id: NP_001014201   ⟸   NM_001014179
- UniProtKB: Q5FVN8 (UniProtKB/Swiss-Prot),   A0A8I5Y6I8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006234273   ⟸   XM_006234211
- Peptide Label: isoform X1
- UniProtKB: Q5FVN8 (UniProtKB/Swiss-Prot),   A0A8I5Y6I8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017447381   ⟸   XM_017591892
- Peptide Label: isoform X2
- UniProtKB: A0A0H2UHE3 (UniProtKB/TrEMBL),   A0A8I5Y6I8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000008168   ⟸   ENSRNOT00000008168
RefSeq Acc Id: XP_038961320   ⟸   XM_039105392
- Peptide Label: isoform X4
- UniProtKB: A6JF69 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSRNOP00000093873   ⟸   ENSRNOT00000103522
RefSeq Acc Id: ENSRNOP00000077591   ⟸   ENSRNOT00000095031
RefSeq Acc Id: XP_063140181   ⟸   XM_063284111
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063140182   ⟸   XM_063284112
- Peptide Label: isoform X3
Protein Domains
SAM   U-box

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q5FVN8-F1-model_v2 AlphaFold Q5FVN8 1-476 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13692087
Promoter ID:EPDNEW_R2612
Type:multiple initiation site
Name:Wdsub1_1
Description:WD repeat, sterile alpha motif and U-box domain containing 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0345,955,403 - 45,955,463EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1359296 AgrOrtholog
BioCyc Gene G2FUF-49636 BioCyc
Ensembl Genes ENSRNOG00000005990 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOG00055000879 UniProtKB/Swiss-Prot
  ENSRNOG00060008570 UniProtKB/Swiss-Prot
  ENSRNOG00065020657 UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000008168.7 UniProtKB/TrEMBL
  ENSRNOT00000095031 ENTREZGENE
  ENSRNOT00000095031.1 UniProtKB/TrEMBL
  ENSRNOT00000103522.1 UniProtKB/TrEMBL
  ENSRNOT00055001480 UniProtKB/Swiss-Prot
  ENSRNOT00060014323 UniProtKB/Swiss-Prot
  ENSRNOT00065035005 UniProtKB/Swiss-Prot
Gene3D-CATH 1.10.150.50 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  2.130.10.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.30.40.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7381399 IMAGE-MGC_LOAD
InterPro G-protein_beta_WD-40_rep UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SAM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SAM/pointed_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ubox_domain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WD40/YVTN_repeat-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WD40_repeat UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WD40_repeat_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_RING/FYVE/PHD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:362137 UniProtKB/Swiss-Prot
MGC_CLONE MGC:108920 IMAGE-MGC_LOAD
NCBI Gene 362137 ENTREZGENE
PANTHER WD REPEAT, SAM AND U-BOX DOMAIN-CONTAINING PROTEIN 1 UniProtKB/Swiss-Prot
  WD REPEAT, SAM AND U-BOX DOMAIN-CONTAINING PROTEIN 1 UniProtKB/Swiss-Prot
  WD REPEAT, SAM AND U-BOX DOMAIN-CONTAINING PROTEIN 1 UniProtKB/TrEMBL
  WD REPEAT, SAM AND U-BOX DOMAIN-CONTAINING PROTEIN 1 UniProtKB/TrEMBL
Pfam SAM_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  U-box UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WD40 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Wdsub1 PhenoGen
PRINTS GPROTEINBRPT UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE SAM_DOMAIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  U_BOX UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WD_REPEATS_1 UniProtKB/Swiss-Prot
  WD_REPEATS_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WD_REPEATS_REGION UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx ENSRNOG00000005990 RatGTEx
  ENSRNOG00055000879 RatGTEx
  ENSRNOG00060008570 RatGTEx
  ENSRNOG00065020657 RatGTEx
SMART SAM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ubox UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WD40 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP RING/U-box UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF47769 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF50978 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0H2UHE3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5Y6I8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AXN7_RAT UniProtKB/TrEMBL
  A6JF68_RAT UniProtKB/TrEMBL
  A6JF69 ENTREZGENE, UniProtKB/TrEMBL
  Q5FVN8 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-12-15 Wdsub1  WD repeat, sterile alpha motif and U-box domain containing 1  Wdsub1  WD repeat, SAM and U-box domain containing 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-11-17 Wdsub1  WD repeat, SAM and U-box domain containing 1  LOC362137  similar to hypothetical protein FLJ36175  Symbol and Name updated 1299863 APPROVED
2005-07-29 LOC362137  similar to hypothetical protein FLJ36175      Symbol and Name status set to provisional 70820 PROVISIONAL