NOP53 (NOP53 ribosome biogenesis factor) - Rat Genome Database

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Gene: NOP53 (NOP53 ribosome biogenesis factor) Homo sapiens
Analyze
Symbol: NOP53
Name: NOP53 ribosome biogenesis factor
RGD ID: 1353107
HGNC Page HGNC:4333
Description: Enables 5S rRNA binding activity; identical protein binding activity; and p53 binding activity. Involved in several processes, including mitotic G2 DNA damage checkpoint signaling; regulation of intracellular signal transduction; and regulation of primary metabolic process. Located in cytosol; nuclear lumen; and rDNA heterochromatin.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: glioma tumor suppressor candidate region gene 2; glioma tumor suppressor candidate region gene 2 protein; GLTSCR2; p60; PICT-1; PICT1; protein interacting with carboxyl terminus 1; ribosome biogenesis protein NOP53
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Related Pseudogenes: AC087633.2  
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381947,745,546 - 47,757,058 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1947,745,546 - 47,757,058 (+)EnsemblGRCh38hg38GRCh38
GRCh371948,248,803 - 48,260,315 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361952,940,620 - 52,952,127 (+)NCBINCBI36Build 36hg18NCBI36
Build 341952,940,619 - 52,952,126NCBI
Celera1945,054,495 - 45,066,024 (+)NCBICelera
Cytogenetic Map19q13.33NCBI
HuRef1944,675,424 - 44,686,829 (+)NCBIHuRef
CHM1_11948,251,102 - 48,262,632 (+)NCBICHM1_1
T2T-CHM13v2.01950,576,356 - 50,587,868 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. GOAs Human GO annotations GOA_HUMAN data from the GO Consortium
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8125298   PMID:10196275   PMID:10708517   PMID:11790298   PMID:12429849   PMID:12477932   PMID:14702039   PMID:15231747   PMID:15355975   PMID:15489334   PMID:15635413   PMID:16169070  
PMID:16971513   PMID:17657248   PMID:17890897   PMID:18029348   PMID:18729076   PMID:19596235   PMID:19615732   PMID:20042497   PMID:20185249   PMID:21145461   PMID:21167305   PMID:21741933  
PMID:21804542   PMID:21866423   PMID:21873635   PMID:21903422   PMID:21988832   PMID:22292050   PMID:22321011   PMID:22522597   PMID:22586326   PMID:22658674   PMID:22681889   PMID:22850112  
PMID:22939629   PMID:23532381   PMID:23920125   PMID:23942755   PMID:24045667   PMID:24054033   PMID:24120868   PMID:24556985   PMID:24735870   PMID:24778252   PMID:24923447   PMID:24981860  
PMID:25118835   PMID:25665578   PMID:25818168   PMID:25956029   PMID:26167880   PMID:26186194   PMID:26344197   PMID:26496610   PMID:26618866   PMID:26724143   PMID:26903295   PMID:26949251  
PMID:27049334   PMID:27323397   PMID:27357325   PMID:27634302   PMID:27705803   PMID:27729611   PMID:27824081   PMID:27829214   PMID:27880917   PMID:27926873   PMID:27996172   PMID:28077445  
PMID:28514442   PMID:28695742   PMID:29117863   PMID:29298432   PMID:29509190   PMID:29568061   PMID:29617699   PMID:29677136   PMID:30021884   PMID:30415952   PMID:30421090   PMID:30554943  
PMID:30833792   PMID:30884312   PMID:30948266   PMID:31091453   PMID:31343991   PMID:31527615   PMID:31586073   PMID:31665637   PMID:31694235   PMID:31703244   PMID:31871319   PMID:32296183  
PMID:32645484   PMID:32707033   PMID:32807901   PMID:32867128   PMID:32877691   PMID:32989298   PMID:32994395   PMID:33545068   PMID:33742100   PMID:33845483   PMID:33961781   PMID:34011540  
PMID:34079125   PMID:34166715   PMID:34244791   PMID:34373451   PMID:35013218   PMID:35140242   PMID:35156780   PMID:35384245   PMID:35652658   PMID:35844135   PMID:35850772   PMID:35915203  
PMID:35944360   PMID:36373674   PMID:36403484   PMID:36424410   PMID:36526897   PMID:36574265   PMID:36912080   PMID:37071682   PMID:37536630   PMID:37689310   PMID:39358380  


Genomics

Comparative Map Data
NOP53
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381947,745,546 - 47,757,058 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1947,745,546 - 47,757,058 (+)EnsemblGRCh38hg38GRCh38
GRCh371948,248,803 - 48,260,315 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361952,940,620 - 52,952,127 (+)NCBINCBI36Build 36hg18NCBI36
Build 341952,940,619 - 52,952,126NCBI
Celera1945,054,495 - 45,066,024 (+)NCBICelera
Cytogenetic Map19q13.33NCBI
HuRef1944,675,424 - 44,686,829 (+)NCBIHuRef
CHM1_11948,251,102 - 48,262,632 (+)NCBICHM1_1
T2T-CHM13v2.01950,576,356 - 50,587,868 (+)NCBIT2T-CHM13v2.0
Nop53
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39715,671,760 - 15,680,033 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl715,670,108 - 15,679,999 (-)EnsemblGRCm39 Ensembl
GRCm38715,937,835 - 15,946,108 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl715,936,183 - 15,946,074 (-)EnsemblGRCm38mm10GRCm38
MGSCv37716,523,184 - 16,531,457 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36715,096,357 - 15,104,578 (-)NCBIMGSCv36mm8
Celera713,136,540 - 13,144,813 (-)NCBICelera
Cytogenetic Map7A2NCBI
cM Map78.64NCBI
Nop53
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8185,757,271 - 85,765,089 (-)NCBIGRCr8
mRatBN7.2176,629,084 - 76,636,902 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl176,629,069 - 76,636,902 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx182,004,061 - 82,011,895 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0190,568,120 - 90,575,954 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0183,759,201 - 83,767,035 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0177,836,522 - 77,843,991 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl177,836,196 - 77,844,189 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0179,101,202 - 79,108,671 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4176,281,104 - 76,288,571 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1176,359,212 - 76,366,682 (-)NCBI
Celera171,119,638 - 71,127,111 (-)NCBICelera
Cytogenetic Map1q21NCBI
Nop53
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555741,506,022 - 1,517,130 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555741,505,997 - 1,514,680 (+)NCBIChiLan1.0ChiLan1.0
NOP53
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22053,897,649 - 53,911,514 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11955,768,753 - 55,780,320 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01944,739,739 - 44,751,303 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11953,393,238 - 53,404,708 (+)NCBIpanpan1.1PanPan1.1panPan2
NOP53
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11108,307,039 - 108,315,732 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1108,307,042 - 108,316,495 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1107,789,230 - 107,797,912 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01108,833,077 - 108,841,767 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1108,829,885 - 108,842,457 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11108,501,211 - 108,509,476 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01108,145,336 - 108,154,020 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01109,013,492 - 109,022,181 (-)NCBIUU_Cfam_GSD_1.0
Nop53
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934919,716,350 - 19,725,739 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366641,334,510 - 1,342,321 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366641,334,487 - 1,343,867 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NOP53
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl653,443,385 - 53,452,017 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1653,443,453 - 53,451,707 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2648,973,573 - 48,982,147 (+)NCBISscrofa10.2Sscrofa10.2susScr3
NOP53
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1641,058,199 - 41,070,220 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl641,057,906 - 41,071,202 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607320,811,521 - 20,823,571 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Nop53
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248326,145,749 - 6,154,411 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248326,144,260 - 6,154,172 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in NOP53
60 total Variants

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 19q13.32-13.33(chr19:46658791-49050450)x3 copy number gain See cases [RCV000052913] Chr19:46658791..49050450 [GRCh38]
Chr19:47162048..49553707 [GRCh37]
Chr19:51853888..54245519 [NCBI36]
Chr19:19q13.32-13.33		 pathogenic
GRCh38/hg38 19q13.33(chr19:47751322-47767410)x3 copy number gain See cases [RCV000052590] Chr19:47751322..47767410 [GRCh38]
Chr19:48254579..48270667 [GRCh37]
Chr19:52946391..52962479 [NCBI36]
Chr19:19q13.33		 uncertain significance
GRCh38/hg38 19q13.32-13.33(chr19:44971420-48257402)x3 copy number gain See cases [RCV000136578] Chr19:44971420..48257402 [GRCh38]
Chr19:45474677..48760659 [GRCh37]
Chr19:50166517..53452471 [NCBI36]
Chr19:19q13.32-13.33		 pathogenic
GRCh38/hg38 19q13.33(chr19:47559877-47778812)x1 copy number loss Premature ovarian failure [RCV000225133] Chr19:47559877..47778812 [GRCh38]
Chr19:48063134..48282069 [GRCh37]
Chr19:19q13.33		 uncertain significance
GRCh37/hg19 19q13.33(chr19:48242225-48399399)x3 copy number gain not provided [RCV000584905] Chr19:48242225..48399399 [GRCh37]
Chr19:19q13.33		 uncertain significance
GRCh37/hg19 19q13.32-13.33(chr19:46404248-48488721)x1 copy number loss See cases [RCV000511362] Chr19:46404248..48488721 [GRCh37]
Chr19:19q13.32-13.33		 likely pathogenic
NM_015710.5(NOP53):c.704C>T (p.Ala235Val) single nucleotide variant not specified [RCV004298279] Chr19:47752546 [GRCh38]
Chr19:48255803 [GRCh37]
Chr19:19q13.33		 likely benign
NM_015710.5(NOP53):c.278C>G (p.Ser93Cys) single nucleotide variant not specified [RCV004327768] Chr19:47747020 [GRCh38]
Chr19:48250277 [GRCh37]
Chr19:19q13.33		 uncertain significance
NM_015710.5(NOP53):c.7G>A (p.Ala3Thr) single nucleotide variant not specified [RCV004319337] Chr19:47745566 [GRCh38]
Chr19:48248823 [GRCh37]
Chr19:19q13.33		 uncertain significance
GRCh37/hg19 19p13.3-q13.43(chr19:260912-58956888) copy number gain See cases [RCV000512296] Chr19:260912..58956888 [GRCh37]
Chr19:19p13.3-q13.43		 pathogenic
NM_015710.5(NOP53):c.406G>T (p.Ala136Ser) single nucleotide variant not specified [RCV004305913] Chr19:47750915 [GRCh38]
Chr19:48254172 [GRCh37]
Chr19:19q13.33		 uncertain significance
NM_015710.5(NOP53):c.1421G>A (p.Arg474His) single nucleotide variant not specified [RCV004292225] Chr19:47756735 [GRCh38]
Chr19:48259992 [GRCh37]
Chr19:19q13.33		 uncertain significance
NM_015710.5(NOP53):c.482T>C (p.Leu161Pro) single nucleotide variant not specified [RCV004298468] Chr19:47750991 [GRCh38]
Chr19:48254248 [GRCh37]
Chr19:19q13.33		 uncertain significance
GRCh37/hg19 19p13.3-q13.43(chr19:260912-58956888)x3 copy number gain See cases [RCV000511289] Chr19:260912..58956888 [GRCh37]
Chr19:19p13.3-q13.43		 pathogenic|uncertain significance
GRCh37/hg19 19q13.33(chr19:48206212-48431087)x3 copy number gain not provided [RCV000684075] Chr19:48206212..48431087 [GRCh37]
Chr19:19q13.33		 uncertain significance
GRCh37/hg19 19p13.3-q13.43(chr19:68029-59110290)x3 copy number gain not provided [RCV000752439] Chr19:68029..59110290 [GRCh37]
Chr19:19p13.3-q13.43		 pathogenic
GRCh37/hg19 19p13.3-q13.43(chr19:260912-59097160)x3 copy number gain not provided [RCV000752444] Chr19:260912..59097160 [GRCh37]
Chr19:19p13.3-q13.43		 pathogenic
GRCh37/hg19 19q13.32-13.33(chr19:47036361-48525536) copy number gain not provided [RCV000767770] Chr19:47036361..48525536 [GRCh37]
Chr19:19q13.32-13.33		 pathogenic
NM_015710.5(NOP53):c.413A>G (p.Gln138Arg) single nucleotide variant not specified [RCV004306879] Chr19:47750922 [GRCh38]
Chr19:48254179 [GRCh37]
Chr19:19q13.33		 uncertain significance
GRCh37/hg19 19q13.33(chr19:48119589-49595956)x3 copy number gain not provided [RCV000848800] Chr19:48119589..49595956 [GRCh37]
Chr19:19q13.33		 uncertain significance
GRCh37/hg19 19q13.31-13.42(chr19:44738088-53621561)x3 copy number gain not provided [RCV001007050] Chr19:44738088..53621561 [GRCh37]
Chr19:19q13.31-13.42		 pathogenic
GRCh37/hg19 19q11-13.33(chr19:28271106-49213832)x3 copy number gain not provided [RCV000845733] Chr19:28271106..49213832 [GRCh37]
Chr19:19q11-13.33		 pathogenic
GRCh37/hg19 19q13.32-13.42(chr19:47939842-54626871) copy number gain not provided [RCV001249294] Chr19:47939842..54626871 [GRCh37]
Chr19:19q13.32-13.42		 not provided
NM_015710.5(NOP53):c.5C>T (p.Ala2Val) single nucleotide variant not specified [RCV004307755] Chr19:47745564 [GRCh38]
Chr19:48248821 [GRCh37]
Chr19:19q13.33		 uncertain significance
NM_015710.5(NOP53):c.309C>G (p.Thr103=) single nucleotide variant not provided [RCV000970364] Chr19:47750197 [GRCh38]
Chr19:48253454 [GRCh37]
Chr19:19q13.33		 benign
NM_015710.5(NOP53):c.714G>A (p.Val238=) single nucleotide variant not provided [RCV000887843] Chr19:47752556 [GRCh38]
Chr19:48255813 [GRCh37]
Chr19:19q13.33		 benign
NM_015710.5(NOP53):c.789G>A (p.Glu263=) single nucleotide variant not provided [RCV000887844] Chr19:47754550 [GRCh38]
Chr19:48257807 [GRCh37]
Chr19:19q13.33		 benign
GRCh37/hg19 19q13.33(chr19:48043102-48402210)x3 copy number gain not provided [RCV001007054] Chr19:48043102..48402210 [GRCh37]
Chr19:19q13.33		 uncertain significance
NM_015710.5(NOP53):c.712G>A (p.Val238Met) single nucleotide variant not specified [RCV004309273] Chr19:47752554 [GRCh38]
Chr19:48255811 [GRCh37]
Chr19:19q13.33		 uncertain significance
NM_015710.5(NOP53):c.865A>C (p.Thr289Pro) single nucleotide variant not specified [RCV004309533] Chr19:47754626 [GRCh38]
Chr19:48257883 [GRCh37]
Chr19:19q13.33		 uncertain significance
NM_015710.5(NOP53):c.454T>C (p.Trp152Arg) single nucleotide variant not specified [RCV004295183] Chr19:47750963 [GRCh38]
Chr19:48254220 [GRCh37]
Chr19:19q13.33		 uncertain significance
NM_015710.5(NOP53):c.1187G>A (p.Arg396Gln) single nucleotide variant not specified [RCV004265789] Chr19:47755481 [GRCh38]
Chr19:48258738 [GRCh37]
Chr19:19q13.33		 uncertain significance
NM_015710.5(NOP53):c.722C>T (p.Ala241Val) single nucleotide variant not specified [RCV004250775] Chr19:47752564 [GRCh38]
Chr19:48255821 [GRCh37]
Chr19:19q13.33		 uncertain significance
NM_015710.5(NOP53):c.244C>G (p.Pro82Ala) single nucleotide variant not specified [RCV004248230] Chr19:47746986 [GRCh38]
Chr19:48250243 [GRCh37]
Chr19:19q13.33		 uncertain significance
NM_015710.5(NOP53):c.439C>T (p.Arg147Trp) single nucleotide variant not specified [RCV004259034] Chr19:47750948 [GRCh38]
Chr19:48254205 [GRCh37]
Chr19:19q13.33		 uncertain significance
NM_015710.5(NOP53):c.1091G>A (p.Arg364Gln) single nucleotide variant not specified [RCV004253980] Chr19:47755385 [GRCh38]
Chr19:48258642 [GRCh37]
Chr19:19q13.33		 uncertain significance
GRCh38/hg38 19q13.32-13.33(chr19:47257435-47886413)x1 copy number loss Cone-rod dystrophy 2 [RCV003327689] Chr19:47257435..47886413 [GRCh38]
Chr19:19q13.32-13.33		 uncertain significance
NM_015710.5(NOP53):c.862G>A (p.Ala288Thr) single nucleotide variant not specified [RCV004336807] Chr19:47754623 [GRCh38]
Chr19:48257880 [GRCh37]
Chr19:19q13.33		 uncertain significance
NM_015710.5(NOP53):c.686A>G (p.His229Arg) single nucleotide variant not specified [RCV004351311] Chr19:47752528 [GRCh38]
Chr19:48255785 [GRCh37]
Chr19:19q13.33		 uncertain significance
NM_015710.5(NOP53):c.1210C>G (p.Arg404Gly) single nucleotide variant not specified [RCV004347190] Chr19:47755504 [GRCh38]
Chr19:48258761 [GRCh37]
Chr19:19q13.33		 uncertain significance
NM_015710.5(NOP53):c.132G>C (p.Lys44Asn) single nucleotide variant not specified [RCV004360792] Chr19:47745691 [GRCh38]
Chr19:48248948 [GRCh37]
Chr19:19q13.33		 uncertain significance
NM_015710.5(NOP53):c.389C>T (p.Ala130Val) single nucleotide variant not provided [RCV004696501]|not specified [RCV004337411] Chr19:47750277 [GRCh38]
Chr19:48253534 [GRCh37]
Chr19:19q13.33		 uncertain significance
NM_015710.5(NOP53):c.187T>C (p.Phe63Leu) single nucleotide variant not specified [RCV004334497] Chr19:47745746 [GRCh38]
Chr19:48249003 [GRCh37]
Chr19:19q13.33		 uncertain significance
NM_015710.5(NOP53):c.1204A>G (p.Lys402Glu) single nucleotide variant not specified [RCV004337454] Chr19:47755498 [GRCh38]
Chr19:48258755 [GRCh37]
Chr19:19q13.33		 uncertain significance
NM_015710.5(NOP53):c.688A>G (p.Thr230Ala) single nucleotide variant not specified [RCV004352752] Chr19:47752530 [GRCh38]
Chr19:48255787 [GRCh37]
Chr19:19q13.33		 uncertain significance
NM_015710.5(NOP53):c.1054C>A (p.Arg352=) single nucleotide variant not specified [RCV004488089] Chr19:47755348 [GRCh38]
Chr19:48258605 [GRCh37]
Chr19:19q13.33		 likely benign
NM_015710.5(NOP53):c.1075C>T (p.Arg359Trp) single nucleotide variant not specified [RCV004488091] Chr19:47755369 [GRCh38]
Chr19:48258626 [GRCh37]
Chr19:19q13.33		 uncertain significance
NM_015710.5(NOP53):c.1162C>T (p.Arg388Trp) single nucleotide variant not specified [RCV004488094] Chr19:47755456 [GRCh38]
Chr19:48258713 [GRCh37]
Chr19:19q13.33		 uncertain significance
NM_015710.5(NOP53):c.1292T>G (p.Leu431Arg) single nucleotide variant not specified [RCV004488100] Chr19:47755818 [GRCh38]
Chr19:48259075 [GRCh37]
Chr19:19q13.33		 uncertain significance
NM_015710.5(NOP53):c.578A>T (p.Tyr193Phe) single nucleotide variant not specified [RCV004488109] Chr19:47751087 [GRCh38]
Chr19:48254344 [GRCh37]
Chr19:19q13.33		 uncertain significance
NM_015710.5(NOP53):c.614C>G (p.Pro205Arg) single nucleotide variant not specified [RCV004488110] Chr19:47751535 [GRCh38]
Chr19:48254792 [GRCh37]
Chr19:19q13.33		 uncertain significance
NM_015710.5(NOP53):c.668A>G (p.Lys223Arg) single nucleotide variant not specified [RCV004488111] Chr19:47751589 [GRCh38]
Chr19:48254846 [GRCh37]
Chr19:19q13.33		 uncertain significance
NM_015710.5(NOP53):c.679C>T (p.Arg227Cys) single nucleotide variant not specified [RCV004488112] Chr19:47752521 [GRCh38]
Chr19:48255778 [GRCh37]
Chr19:19q13.33		 uncertain significance
NM_015710.5(NOP53):c.743A>G (p.Asn248Ser) single nucleotide variant not specified [RCV004488113] Chr19:47752585 [GRCh38]
Chr19:48255842 [GRCh37]
Chr19:19q13.33		 uncertain significance
NM_015710.5(NOP53):c.985G>A (p.Ala329Thr) single nucleotide variant not specified [RCV004488115] Chr19:47754823 [GRCh38]
Chr19:48258080 [GRCh37]
Chr19:19q13.33		 uncertain significance
NM_015710.5(NOP53):c.1109G>A (p.Arg370Gln) single nucleotide variant not specified [RCV004488092] Chr19:47755403 [GRCh38]
Chr19:48258660 [GRCh37]
Chr19:19q13.33		 uncertain significance
NM_015710.5(NOP53):c.1010A>C (p.Lys337Thr) single nucleotide variant not specified [RCV004488087] Chr19:47754848 [GRCh38]
Chr19:48258105 [GRCh37]
Chr19:19q13.33		 uncertain significance
NM_015710.5(NOP53):c.1208C>T (p.Pro403Leu) single nucleotide variant not specified [RCV004488098] Chr19:47755502 [GRCh38]
Chr19:48258759 [GRCh37]
Chr19:19q13.33		 uncertain significance
NM_015710.5(NOP53):c.1265C>T (p.Ser422Leu) single nucleotide variant not specified [RCV004488099] Chr19:47755791 [GRCh38]
Chr19:48259048 [GRCh37]
Chr19:19q13.33		 uncertain significance
NM_015710.5(NOP53):c.33G>T (p.Lys11Asn) single nucleotide variant not specified [RCV004488106] Chr19:47745592 [GRCh38]
Chr19:48248849 [GRCh37]
Chr19:19q13.33		 uncertain significance
NM_015710.5(NOP53):c.1069G>A (p.Ala357Thr) single nucleotide variant not specified [RCV004488090] Chr19:47755363 [GRCh38]
Chr19:48258620 [GRCh37]
Chr19:19q13.33		 uncertain significance
NM_015710.5(NOP53):c.1142G>A (p.Arg381Lys) single nucleotide variant not specified [RCV004488093] Chr19:47755436 [GRCh38]
Chr19:48258693 [GRCh37]
Chr19:19q13.33		 uncertain significance
NM_015710.5(NOP53):c.1183C>T (p.Arg395Trp) single nucleotide variant not specified [RCV004488097] Chr19:47755477 [GRCh38]
Chr19:48258734 [GRCh37]
Chr19:19q13.33		 uncertain significance
NM_015710.5(NOP53):c.1412G>A (p.Arg471Gln) single nucleotide variant not specified [RCV004488103] Chr19:47756726 [GRCh38]
Chr19:48259983 [GRCh37]
Chr19:19q13.33		 uncertain significance
NM_015710.5(NOP53):c.1420C>T (p.Arg474Cys) single nucleotide variant not specified [RCV004488104] Chr19:47756734 [GRCh38]
Chr19:48259991 [GRCh37]
Chr19:19q13.33		 uncertain significance
NM_015710.5(NOP53):c.487C>T (p.Arg163Trp) single nucleotide variant not specified [RCV004488108] Chr19:47750996 [GRCh38]
Chr19:48254253 [GRCh37]
Chr19:19q13.33		 uncertain significance
NM_015710.5(NOP53):c.1031G>A (p.Arg344Gln) single nucleotide variant not specified [RCV004488088] Chr19:47754869 [GRCh38]
Chr19:48258126 [GRCh37]
Chr19:19q13.33		 uncertain significance
NM_015710.5(NOP53):c.116G>C (p.Arg39Pro) single nucleotide variant not specified [RCV004488095] Chr19:47745675 [GRCh38]
Chr19:48248932 [GRCh37]
Chr19:19q13.33		 uncertain significance
NM_015710.5(NOP53):c.1174C>T (p.Arg392Trp) single nucleotide variant not specified [RCV004488096] Chr19:47755468 [GRCh38]
Chr19:48258725 [GRCh37]
Chr19:19q13.33		 uncertain significance
NM_015710.5(NOP53):c.1356G>T (p.Glu452Asp) single nucleotide variant not specified [RCV004488101] Chr19:47756587 [GRCh38]
Chr19:48259844 [GRCh37]
Chr19:19q13.33		 uncertain significance
NM_015710.5(NOP53):c.1369G>A (p.Ala457Thr) single nucleotide variant not specified [RCV004488102] Chr19:47756600 [GRCh38]
Chr19:48259857 [GRCh37]
Chr19:19q13.33		 uncertain significance
NM_015710.5(NOP53):c.359T>C (p.Leu120Pro) single nucleotide variant not specified [RCV004488107] Chr19:47750247 [GRCh38]
Chr19:48253504 [GRCh37]
Chr19:19q13.33		 uncertain significance
NM_015710.5(NOP53):c.895G>A (p.Glu299Lys) single nucleotide variant not specified [RCV004488114] Chr19:47754733 [GRCh38]
Chr19:48257990 [GRCh37]
Chr19:19q13.33		 uncertain significance
NM_015710.5(NOP53):c.1322G>A (p.Arg441Gln) single nucleotide variant not specified [RCV004647543] Chr19:47756553 [GRCh38]
Chr19:48259810 [GRCh37]
Chr19:19q13.33		 uncertain significance
NM_015710.5(NOP53):c.295A>G (p.Thr99Ala) single nucleotide variant not specified [RCV004647544] Chr19:47750183 [GRCh38]
Chr19:48253440 [GRCh37]
Chr19:19q13.33		 uncertain significance
NM_015710.5(NOP53):c.167T>C (p.Leu56Pro) single nucleotide variant not specified [RCV004647546] Chr19:47745726 [GRCh38]
Chr19:48248983 [GRCh37]
Chr19:19q13.33		 uncertain significance
NM_015710.5(NOP53):c.172C>G (p.Leu58Val) single nucleotide variant not specified [RCV004647547] Chr19:47745731 [GRCh38]
Chr19:48248988 [GRCh37]
Chr19:19q13.33		 uncertain significance
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:3781
Count of miRNA genes:908
Interacting mature miRNAs:1117
Transcripts:ENST00000246802, ENST00000594182, ENST00000594525, ENST00000595143, ENST00000597985, ENST00000598285, ENST00000598681, ENST00000598959, ENST00000599253, ENST00000599582, ENST00000600266, ENST00000600410
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1559110SCL22_HSerum cholesterol level QTL 22 (human)3.590.000241Lipid levelLDL cholesterol193190759457907594Human
1331657COPD9_HChronic obstructive pulmonary disease QTL 9 (human)1.94Chronic airflow obstructionpost-bronchodilator FEV1193102176057021760Human

Markers in Region
RH91488  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371948,258,741 - 48,259,059UniSTSGRCh37
GRCh371595,399,897 - 95,399,983UniSTSGRCh37
Build 361593,200,901 - 93,200,987RGDNCBI36
Celera1945,064,442 - 45,064,760RGD
Cytogenetic Map19q13.3UniSTS
Cytogenetic Map19q13.32UniSTS
Cytogenetic Map15q26.2UniSTS
HuRef1944,685,247 - 44,685,565UniSTS
GeneMap99-GB4 RH Map19255.29UniSTS
RH65606  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371948,253,662 - 48,253,816UniSTSGRCh37
Build 361952,945,474 - 52,945,628RGDNCBI36
Celera1945,059,364 - 45,059,518RGD
Cytogenetic Map19q13.3UniSTS
HuRef1944,680,169 - 44,680,323UniSTS
GeneMap99-GB4 RH Map19266.52UniSTS
D15S1477  
Human AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map4q32-q35UniSTS
Cytogenetic Map5q11UniSTS
Cytogenetic Map10p12.1UniSTS
Cytogenetic Map10p12.1-p11.2UniSTS
Cytogenetic Map15q13UniSTS
Cytogenetic Map21q21.3UniSTS
Cytogenetic Map12p13.3UniSTS
Cytogenetic Map1q25UniSTS
Cytogenetic Map20q13.3UniSTS
Cytogenetic Map14q11.2UniSTS
Cytogenetic Map11p15.4UniSTS
Cytogenetic Map12q12UniSTS
Cytogenetic Map3p24.3UniSTS
Cytogenetic Map5q14UniSTS
Cytogenetic Map3q29UniSTS
Cytogenetic Map1p36.13UniSTS
Cytogenetic Map7q36.3UniSTS
Cytogenetic Map7p21.3UniSTS
Cytogenetic Map1q22UniSTS
Cytogenetic Map14q32.33UniSTS
Cytogenetic Map14q23.3UniSTS
Cytogenetic Map19q13.4UniSTS
Cytogenetic Map2q11.2UniSTS
Cytogenetic Map14q31-q32UniSTS
Cytogenetic Map10q25.2UniSTS
Cytogenetic Map16p13.13-p13.12UniSTS
Cytogenetic Map3q12.3UniSTS
Cytogenetic Map14q24.3UniSTS
Cytogenetic Map10p15.3UniSTS
Cytogenetic Map2p22.1UniSTS
Cytogenetic Map13q13.1UniSTS
Cytogenetic Map5q23.3UniSTS
Cytogenetic Map15q21.1UniSTS
Cytogenetic Map19q13.42UniSTS
Cytogenetic Map17q21UniSTS
Cytogenetic Map3p21.3UniSTS
Cytogenetic Map12q24.13UniSTS
Cytogenetic Map4q21.1UniSTS
Cytogenetic Map19q13.3UniSTS
Cytogenetic Map2q37.3UniSTS
Cytogenetic Map2p15UniSTS
Cytogenetic Map17q25.3UniSTS
Cytogenetic Map19p13UniSTS
Cytogenetic Map4p16.3UniSTS
Cytogenetic Map1p35.1UniSTS
Cytogenetic Map17q11.2UniSTS
Cytogenetic Map1p31.3UniSTS
Cytogenetic Map20q13.31UniSTS
Cytogenetic Map10q22UniSTS
Cytogenetic Map1q41UniSTS
Cytogenetic Map9q34.3UniSTS
Cytogenetic Map9p13.3UniSTS
Cytogenetic Map12q24.31UniSTS
Cytogenetic Map2p13.1UniSTS
Cytogenetic Map19q13.12UniSTS
Cytogenetic Map10q24.2UniSTS
Cytogenetic Map1q42.11UniSTS
Cytogenetic Map1q32.1UniSTS
Cytogenetic Map2p23.3UniSTS
Cytogenetic Map2p13.3UniSTS
Cytogenetic Map7p22.1UniSTS
Cytogenetic Map11q24UniSTS
Cytogenetic Map6q16.2UniSTS
Cytogenetic Map2q14UniSTS
Cytogenetic Map19q13.1UniSTS
Cytogenetic Map16q24UniSTS
Cytogenetic MapXq26.3UniSTS
Cytogenetic Map10q23.1UniSTS
Cytogenetic Map3p21.31UniSTS
Cytogenetic Map4q12UniSTS
Cytogenetic Map19p13.2UniSTS
Cytogenetic Map2p11.2UniSTS
Cytogenetic Map7q21.2UniSTS
Cytogenetic Map17q22.2UniSTS
Cytogenetic Map8q22.3UniSTS
Cytogenetic Map4q25UniSTS
Cytogenetic Map11q14.2UniSTS
Cytogenetic Map19p13.3UniSTS
Cytogenetic Map5q23UniSTS
Cytogenetic Map16p13.3UniSTS
Cytogenetic Map16q22.1UniSTS
Cytogenetic Map13q12.1UniSTS
Cytogenetic Map6p21.32UniSTS
Cytogenetic Map2q31UniSTS
Cytogenetic Map10p14UniSTS
Cytogenetic Map6p21.3UniSTS
Cytogenetic Map3p21.2UniSTS
Cytogenetic Map1q21.3UniSTS
Cytogenetic Map19p12UniSTS
Cytogenetic Map7q22.1UniSTS
Cytogenetic Map14q12UniSTS
Cytogenetic Map8p11.22UniSTS
Cytogenetic Map19q13.32UniSTS
Cytogenetic Map17q21.31UniSTS
Cytogenetic Map4q28.2UniSTS
Cytogenetic Map1p13.2UniSTS
Cytogenetic Map22q12.3UniSTS
Cytogenetic Map19p13.11UniSTS
Cytogenetic Map16p12.3UniSTS
Cytogenetic Map15q22.31UniSTS
Cytogenetic Map2q31.1UniSTS
Cytogenetic Map2q33.2UniSTS
Cytogenetic Map1p34.3UniSTS
Cytogenetic Map1p36.31UniSTS
Cytogenetic Map3q21.3UniSTS
Cytogenetic Map17q25UniSTS
Cytogenetic Map11p13UniSTS
Cytogenetic Map12q13.3UniSTS
Cytogenetic Map1p36.21UniSTS
Cytogenetic Map1p35.3UniSTS
Cytogenetic Map19q13.2UniSTS
Cytogenetic Map4p14UniSTS
Cytogenetic Map15q11-q13UniSTS
Cytogenetic Map19pUniSTS
Cytogenetic Map7q22UniSTS
Cytogenetic Map9q22.3UniSTS
Cytogenetic Map3p25.3UniSTS
Cytogenetic Map11q13UniSTS
Cytogenetic Map8q11.21UniSTS
Cytogenetic Map15q15UniSTS
Cytogenetic Map15q15.1UniSTS
Cytogenetic Map2q22.3UniSTS
Cytogenetic Map1p34.2UniSTS
Cytogenetic Map5q13.2UniSTS
Cytogenetic Map10q23.2UniSTS
Cytogenetic Map7p22.3UniSTS
Cytogenetic Map9q34.13UniSTS
Cytogenetic Map1q32UniSTS
Cytogenetic Map1q31.3UniSTS
Cytogenetic Map4q35UniSTS
Cytogenetic Map9p13UniSTS
Cytogenetic Map3p24.2UniSTS
Cytogenetic Map3q23UniSTS
Cytogenetic Map6q25.2-q25.3UniSTS
Cytogenetic Map15q21UniSTS
Cytogenetic Map16p11.2UniSTS
Cytogenetic Map1q42.3UniSTS
Cytogenetic Map7q22.3UniSTS
Cytogenetic Map9q34.2UniSTS
Cytogenetic Map17q24UniSTS
Cytogenetic Map17q25.1UniSTS
Cytogenetic Map19q13.3-q13.4UniSTS
Cytogenetic Map22q11.23UniSTS
Cytogenetic Map3q21UniSTS
Cytogenetic Map20q13UniSTS
Cytogenetic Map22q12.2UniSTS
Cytogenetic Map19p13.12UniSTS
Cytogenetic Map14q22.1UniSTS
Cytogenetic Map11q23.1UniSTS
Cytogenetic Map17q22-q23UniSTS
Cytogenetic MapXp22.33UniSTS
Cytogenetic MapYp11.3UniSTS
Cytogenetic Map6p21.1UniSTS
Cytogenetic Map22q13.1UniSTS
Cytogenetic Map7p15.2UniSTS
Cytogenetic Map1q21UniSTS
Cytogenetic Map12q23.1UniSTS
Cytogenetic Map16q12.2UniSTS
Cytogenetic Map13q11UniSTS
Cytogenetic MapXp22.3UniSTS
Cytogenetic Map3p25-p24UniSTS
Cytogenetic Map22q13.2UniSTS
Cytogenetic Map2p21UniSTS
Cytogenetic MapXq22.1UniSTS
Cytogenetic MapXp11.3UniSTS
Cytogenetic Map3p12UniSTS
Cytogenetic Map1q25.1UniSTS
Cytogenetic Map17p11.2UniSTS
Cytogenetic MapXp11.2UniSTS
Cytogenetic Map11q13.1-q13.2UniSTS
Cytogenetic Map8q24.3UniSTS
Cytogenetic Map17p13UniSTS
Cytogenetic Map5p13.2UniSTS
Cytogenetic Map7q21-q22UniSTS
Cytogenetic Map9q34.11UniSTS
Cytogenetic Map3q26.2UniSTS
Cytogenetic Map20q11.22UniSTS
Cytogenetic Map8p22UniSTS
Cytogenetic Map4q35.1UniSTS
Cytogenetic Map10q23.31UniSTS
Cytogenetic Map6p21.1-p12.2UniSTS
Cytogenetic Map12q14.1UniSTS
Cytogenetic Map7p11.2UniSTS
Cytogenetic Map11p15.5UniSTS
Cytogenetic Map1p35UniSTS
Cytogenetic Map12qUniSTS
Cytogenetic Map1q21.2UniSTS
Cytogenetic Map8q23.1UniSTS
Cytogenetic Map1p13.3UniSTS
Cytogenetic Map14q11.1UniSTS
Cytogenetic Map21q22.11UniSTS
Cytogenetic Map3p14.1UniSTS
Cytogenetic Map5q31UniSTS
Cytogenetic Map19p13.3-p13.2UniSTS
Cytogenetic Map1p36.11-p34.2UniSTS
Cytogenetic Map9p22UniSTS
Cytogenetic Map1q42.12UniSTS
Cytogenetic Map2q35UniSTS
Cytogenetic Map9p22.1UniSTS
Cytogenetic Map11q24.2UniSTS
Cytogenetic Map12q15UniSTS
Cytogenetic Map17p13.2UniSTS
Cytogenetic Map8q22.1UniSTS
Cytogenetic Map9q21.13UniSTS
Cytogenetic Map11p15.1UniSTS
Cytogenetic Map1p32.3UniSTS
Cytogenetic Map12q21.1UniSTS
Cytogenetic Map20q13.33UniSTS
Cytogenetic Map3p21UniSTS
Cytogenetic Map20p11.23UniSTS
Cytogenetic Map15q15.2UniSTS
Cytogenetic Map8p21.1UniSTS
Cytogenetic Map1p36.33UniSTS
Cytogenetic Map18q12.1UniSTS
Cytogenetic Map8q12.1UniSTS
Cytogenetic Map14q21.2UniSTS
Cytogenetic Map3q27.1UniSTS
Cytogenetic Map3p14.3UniSTS
Cytogenetic Map17p13.1UniSTS
Cytogenetic Map6p22.1UniSTS
Cytogenetic Map12p13.2UniSTS
Cytogenetic Map12q13.13UniSTS
Cytogenetic Map15q21.3UniSTS
Cytogenetic MapXp11.22UniSTS
Cytogenetic Map12p12UniSTS
Cytogenetic Map15q15.3UniSTS
Cytogenetic Map18q12.3UniSTS
Cytogenetic Map21q22.3UniSTS
Cytogenetic Map12q11-q12UniSTS
Cytogenetic Map3q13.33UniSTS
Cytogenetic Map11q13.4UniSTS
Cytogenetic Map2p24UniSTS
Cytogenetic Map8q24.21UniSTS
Cytogenetic Map12q22-q23.1UniSTS
Cytogenetic Map3q26.33UniSTS
Cytogenetic Map5q32UniSTS
Cytogenetic Map15q21-q22UniSTS
Cytogenetic Map8p21.2UniSTS
Cytogenetic Map10q23UniSTS
Cytogenetic Map1p22UniSTS
Cytogenetic Map16p13.13UniSTS
Cytogenetic Map17p13.3UniSTS
Cytogenetic Map10q24UniSTS
Cytogenetic Map8q11.2UniSTS
Cytogenetic Map7p14-p13UniSTS
Cytogenetic Map11q22-q23UniSTS
Cytogenetic Map6q22-q23UniSTS
Cytogenetic Map2p16.1UniSTS
Cytogenetic Map15q26.3UniSTS
Cytogenetic Map7p14.3UniSTS
Cytogenetic Map4q21.22UniSTS
Cytogenetic Map1q21.1UniSTS
Cytogenetic Map17q21.33UniSTS
Cytogenetic Map17q12UniSTS
Cytogenetic Map16p12.1UniSTS
Cytogenetic Map14q32.31UniSTS
Cytogenetic Map11q24.3UniSTS
Cytogenetic Map11q13.1-q13.3UniSTS
Cytogenetic Map14q24.2UniSTS
Cytogenetic Map17q23.3UniSTS
Cytogenetic Map2q24UniSTS
Cytogenetic Map1q23.3UniSTS
Cytogenetic Map10q25UniSTS
Cytogenetic Map9q32UniSTS
Cytogenetic Map3q25.33UniSTS
Cytogenetic Map2p14UniSTS
Cytogenetic Map15q21-q23UniSTS
Cytogenetic Map7q11.23UniSTS
Cytogenetic Map3p22.1UniSTS
Cytogenetic Map19q13.11UniSTS
Cytogenetic Map15q25.2UniSTS
Cytogenetic Map10q26.3UniSTS
Cytogenetic Map6p21UniSTS
Cytogenetic Map2p25.2UniSTS
Cytogenetic Map14q23.1UniSTS
Cytogenetic Map1p31.1UniSTS
Cytogenetic Map15q14-q15UniSTS
Cytogenetic Map5q31.1UniSTS
Cytogenetic Map1p34UniSTS
Cytogenetic MapXq22.3UniSTS
Cytogenetic Map7p15.3UniSTS
Cytogenetic Map6p25.2UniSTS
Cytogenetic Map6q25.1UniSTS
Cytogenetic Map12p12.1UniSTS
Cytogenetic MapXq25UniSTS
Cytogenetic Map14q23.2UniSTS
Cytogenetic Map11q12UniSTS
Cytogenetic Map2p25.1UniSTS
Cytogenetic Map5q35UniSTS
Cytogenetic Map16q21UniSTS
Cytogenetic Map6p23UniSTS
Cytogenetic Map7q34UniSTS
Cytogenetic Map4p16.1UniSTS
Cytogenetic Map3q25.31UniSTS
Cytogenetic Map2q33.1UniSTS
Cytogenetic Map17q21.2UniSTS
Cytogenetic Map19q13.41UniSTS
Cytogenetic Map11q12.3UniSTS
Cytogenetic Map11q13.1UniSTS
Cytogenetic Map10q24.31UniSTS
Cytogenetic Map20q13.13UniSTS
Cytogenetic Map1p22.1UniSTS
Cytogenetic Map10q22.2UniSTS
Cytogenetic Map6q13UniSTS
Cytogenetic Map10q21.3UniSTS
Cytogenetic Map17p12UniSTS
Cytogenetic Map11q23.3UniSTS
Cytogenetic Map4q31.1UniSTS
Cytogenetic Map19q13.43UniSTS
Cytogenetic Map18q21.3UniSTS
Cytogenetic Map11q21UniSTS
Cytogenetic Map5q13UniSTS
Cytogenetic Map11q23.2UniSTS
Cytogenetic Map8q12UniSTS
Cytogenetic Map4q28-q32UniSTS
Cytogenetic Map19q13.33UniSTS
Cytogenetic Map15q21.2UniSTS
Cytogenetic Map16q24.1UniSTS
Cytogenetic Map9q34UniSTS
Cytogenetic Map5q12.3UniSTS
Cytogenetic Map12q24.11UniSTS
Cytogenetic Map9q21.12UniSTS
Cytogenetic Map9q33.3UniSTS
Cytogenetic Map11q22.3UniSTS
Cytogenetic Map20p11.22-p11.1UniSTS
Cytogenetic Map10q24.32UniSTS
Cytogenetic Map20p13UniSTS
Cytogenetic Map16q23.1UniSTS
Cytogenetic Map13q14.2UniSTS
Cytogenetic Map2q24.3UniSTS
Cytogenetic Map8p12UniSTS
Cytogenetic Map7p13UniSTS
Cytogenetic Map9q31-q33UniSTS
Cytogenetic Map6p24.1UniSTS
Cytogenetic Map10p11.23UniSTS
Cytogenetic Map6q15UniSTS
Cytogenetic Map5q35.2UniSTS
Cytogenetic Map14q32UniSTS
Cytogenetic Map3q26.1-q26.2UniSTS
Cytogenetic Map5q11.2-q13.2UniSTS
Cytogenetic Map1p36.11UniSTS
Cytogenetic Map1q25.2UniSTS
Cytogenetic MapXp11.4UniSTS
Cytogenetic MapXq13.3UniSTS
Cytogenetic Map8q22.2UniSTS
Cytogenetic Map7q11.21UniSTS
Cytogenetic Map5q35.1UniSTS
Cytogenetic Map5q33.1UniSTS
Cytogenetic Map4q21.21UniSTS
Cytogenetic Map2q21.1UniSTS
Cytogenetic Map22q11.21UniSTS
Cytogenetic Map18p11.21UniSTS
Cytogenetic MapXq13.1UniSTS
Cytogenetic MapXq21.1UniSTS
Cytogenetic Map10p11.21UniSTS
Cytogenetic Map12q14.3UniSTS
Cytogenetic Map5q34UniSTS
Cytogenetic Map2q36.1UniSTS
Cytogenetic Map12p11.21UniSTS
Cytogenetic Map5q33.3UniSTS
Cytogenetic Map16q23.2UniSTS
Cytogenetic Map9q31.3UniSTS
Cytogenetic Map15q24UniSTS
Cytogenetic Map11q13.2UniSTS
Cytogenetic Map12q21UniSTS
Cytogenetic Map8p11.2UniSTS
Cytogenetic Map7q22-q31UniSTS
Cytogenetic Map22q12UniSTS
Cytogenetic Map4q22UniSTS
Cytogenetic Map17q21.32UniSTS
Cytogenetic Map12q14UniSTS
Cytogenetic Map11q23.1-q23.2UniSTS
Cytogenetic Map13q14UniSTS
Cytogenetic Map13q32.2UniSTS
Cytogenetic Map17qUniSTS
Cytogenetic Map2q33UniSTS
Cytogenetic Map7qUniSTS
Cytogenetic Map16p12.2UniSTS
Cytogenetic Map10q11.23UniSTS
Cytogenetic Map20q13.12UniSTS
Cytogenetic Map22q13.33UniSTS
Cytogenetic Map13q22.1UniSTS
Cytogenetic Map3p25.2UniSTS
Cytogenetic Map5q21.3UniSTS
Cytogenetic Map9q22.2UniSTS
Cytogenetic Map3p22.2UniSTS
Cytogenetic Map6p24.2UniSTS
D11S2560  
Human AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map10p12.1-p11.2UniSTS
Cytogenetic Map22q13.1UniSTS
Cytogenetic Map12p13.3UniSTS
Cytogenetic Map20q13.3UniSTS
Cytogenetic Map19p13.12UniSTS
Cytogenetic Map8q21.13UniSTS
Cytogenetic Map18p11.22UniSTS
Cytogenetic Map9p13.3-p12UniSTS
Cytogenetic Map10p12.1UniSTS
Cytogenetic Map19q13.11UniSTS
Cytogenetic Map22q11.23UniSTS
Cytogenetic Map5q23.3UniSTS
Cytogenetic Map15q21.1UniSTS
Cytogenetic Map14q24.2UniSTS
Cytogenetic Map15q13UniSTS
Cytogenetic Map6q25.3UniSTS
Cytogenetic Map8p22-p21UniSTS
Cytogenetic Map1p34.1UniSTS
Cytogenetic Map4p16.3UniSTS
Cytogenetic Map17q12UniSTS
Cytogenetic Map15q21.3UniSTS
Cytogenetic Map12q24.31UniSTS
Cytogenetic Map2p13.1UniSTS
Cytogenetic Map19q13.12UniSTS
Cytogenetic Map10q24.2UniSTS
Cytogenetic Map2p23.3UniSTS
Cytogenetic Map19q13.42UniSTS
Cytogenetic Map6q16.2UniSTS
Cytogenetic MapXq26.3UniSTS
Cytogenetic Map9q22.33UniSTS
Cytogenetic Map7q21.2UniSTS
Cytogenetic Map16p11.2UniSTS
Cytogenetic Map8q24.13UniSTS
Cytogenetic Map4q25UniSTS
Cytogenetic Map12p13.33UniSTS
Cytogenetic Map19p13.3UniSTS
Cytogenetic Map5q23UniSTS
Cytogenetic Map16p13.3UniSTS
Cytogenetic Map1q32.1UniSTS
Cytogenetic Map3p21.2UniSTS
Cytogenetic Map19q13.32UniSTS
Cytogenetic Map1p13.2UniSTS
Cytogenetic Map6q27UniSTS
Cytogenetic Map2p13.3UniSTS
Cytogenetic Map2p25.1UniSTS
Cytogenetic Map16q24.1UniSTS
Cytogenetic Map7q22.1UniSTS
Cytogenetic Map22q11.21UniSTS
Cytogenetic Map17q21.31UniSTS
Cytogenetic Map2q12.1UniSTS
Cytogenetic Map9q13-q21UniSTS
Cytogenetic Map19p12UniSTS
Cytogenetic Map2p15UniSTS
Cytogenetic Map8q11.21UniSTS
Cytogenetic Map15q15UniSTS
Cytogenetic Map1p36.21UniSTS
Cytogenetic Map12q23-q24.1UniSTS
Cytogenetic Map1p34.2UniSTS
Cytogenetic Map10q23.2UniSTS
Cytogenetic Map3q23UniSTS
Cytogenetic Map19p13.2UniSTS
Cytogenetic Map15q21UniSTS
Cytogenetic Map9q34.2UniSTS
Cytogenetic Map17q25.1UniSTS
Cytogenetic Map2q35UniSTS
Cytogenetic Map6p21.1UniSTS
Cytogenetic Map22q12.2UniSTS
Cytogenetic Map1p32UniSTS
Cytogenetic Map1p35.1UniSTS
Cytogenetic Map7p15.2UniSTS
Cytogenetic Map12p13.2UniSTS
Cytogenetic Map16q12.2UniSTS
Cytogenetic Map3q26.2-q27UniSTS
Cytogenetic Map2p21UniSTS
Cytogenetic Map8p23.1UniSTS
Cytogenetic Map17p11.2UniSTS
Cytogenetic MapXp11.2UniSTS
Cytogenetic Map20q11.2UniSTS
Cytogenetic Map3q26.2UniSTS
Cytogenetic Map4q22.1UniSTS
Cytogenetic Map4p15.32UniSTS
Cytogenetic Map7q36.3UniSTS
Cytogenetic Map2q33.2UniSTS
Cytogenetic Map20q13.13UniSTS
Cytogenetic Map10p13UniSTS
Cytogenetic Map19q13.4UniSTS
Cytogenetic Map1p36.11-p34.2UniSTS
Cytogenetic Map1q21.3UniSTS
Cytogenetic Map8p21.3UniSTS
Cytogenetic Map18p11.32UniSTS
Cytogenetic Map17p13.2UniSTS
Cytogenetic Map8q22.1UniSTS
Cytogenetic Map16q22.1UniSTS
Cytogenetic Map3p21UniSTS
Cytogenetic Map14q13.2UniSTS
Cytogenetic Map8q12.1UniSTS
Cytogenetic Map3p22.3UniSTS
Cytogenetic Map8q24.3UniSTS
Cytogenetic Map13q12.11UniSTS
Cytogenetic Map12p12UniSTS
Cytogenetic Map22q13.33UniSTS
Cytogenetic Map14q31.1UniSTS
Cytogenetic Map21q22.2UniSTS
Cytogenetic Map2p11.2UniSTS
Cytogenetic Map18q12.3UniSTS
Cytogenetic Map12q13.3UniSTS
Cytogenetic Map2p16.1UniSTS
Cytogenetic Map9q34.11UniSTS
Cytogenetic Map12q13.13UniSTS
Cytogenetic Map8q24.21UniSTS
Cytogenetic Map12q22-q23.1UniSTS
Cytogenetic Map3q26.33UniSTS
Cytogenetic Map1q23UniSTS
Cytogenetic Map11p15.1UniSTS
Cytogenetic Map7q32UniSTS
Cytogenetic Map11p13UniSTS
Cytogenetic Map5p13.1UniSTS
Cytogenetic Map18q21UniSTS
Cytogenetic Map7p14-p13UniSTS
Cytogenetic Map11q13UniSTS
Cytogenetic Map11q22-q23UniSTS
Cytogenetic Map19p13.3-p13.2UniSTS
Cytogenetic Map6q22-q23UniSTS
Cytogenetic Map7p14.3UniSTS
Cytogenetic Map1q21.1UniSTS
Cytogenetic Map14q32.31UniSTS
Cytogenetic Map11q13.1-q13.3UniSTS
Cytogenetic Map1q32UniSTS
Cytogenetic Map6p24UniSTS
Cytogenetic Map10q25UniSTS
Cytogenetic Map8q22.3UniSTS
Cytogenetic Map2p14UniSTS
Cytogenetic Map1p36.31UniSTS
Cytogenetic Map6q13UniSTS
Cytogenetic Map2p25.2UniSTS
Cytogenetic Map1p31.1UniSTS
Cytogenetic Map15q14-q15UniSTS
Cytogenetic Map9q31.1UniSTS
Cytogenetic Map21q22.11UniSTS
Cytogenetic Map7p15.3UniSTS
Cytogenetic Map5q35.3UniSTS
Cytogenetic Map1p36.32UniSTS
Cytogenetic Map15q11.2UniSTS
Cytogenetic Map12p12.1UniSTS
Cytogenetic MapXq25UniSTS
Cytogenetic MapXq28UniSTS
Cytogenetic Map19q13.3UniSTS
Cytogenetic Map8p21.1UniSTS
Cytogenetic Map3p26.1-p25.1UniSTS
Cytogenetic Map6q16.3UniSTS
Cytogenetic Map3q21.3UniSTS
Cytogenetic MapXq27.1UniSTS
Cytogenetic Map3q12.3UniSTS
Cytogenetic Map3q25.31UniSTS
Cytogenetic Map17q25.3UniSTS
Cytogenetic Map17p13.3UniSTS
Cytogenetic Map11q12.3UniSTS
Cytogenetic Map11q13.4UniSTS
Cytogenetic Map19q13.1UniSTS
Cytogenetic Map1q42.3UniSTS
Cytogenetic Map22q13.2UniSTS
Cytogenetic Map12q13.12UniSTS
Cytogenetic Map2q33.1UniSTS
Cytogenetic Map11q23.3UniSTS
Cytogenetic Map4q31.1UniSTS
Cytogenetic Map14q32.33UniSTS
Cytogenetic Map9q33.2UniSTS
Cytogenetic Map5q13UniSTS
Cytogenetic Map8q12UniSTS
Cytogenetic Map15q22.31UniSTS
Cytogenetic Map17q24.3UniSTS
Cytogenetic Map5q12.3UniSTS
Cytogenetic Map1p32.3UniSTS
Cytogenetic Map6q21UniSTS
Cytogenetic Map10q24.32UniSTS
Cytogenetic Map19q13UniSTS
Cytogenetic Map17q21UniSTS
Cytogenetic Map14q32.32UniSTS
Cytogenetic Map16p13.2UniSTS
Cytogenetic Map1p36.33UniSTS
Cytogenetic Map10q11.22UniSTS
Cytogenetic Map1p34UniSTS
Cytogenetic Map6q14.1UniSTS
Cytogenetic Map14q32UniSTS
Cytogenetic Map1p36.3-p36.2UniSTS
Cytogenetic Map2q11.2UniSTS
Cytogenetic Map1p32-p31UniSTS
Cytogenetic Map7q34UniSTS
Cytogenetic Map5q33.1UniSTS
Cytogenetic Map2q21.1UniSTS
Cytogenetic Map19q13.41UniSTS
Cytogenetic Map18p11.21UniSTS
Cytogenetic Map10q26.11UniSTS
Cytogenetic Map12q14.3UniSTS
Cytogenetic Map5q34UniSTS
Cytogenetic Map2q36.1UniSTS
Cytogenetic Map15q25.2UniSTS
Cytogenetic Map1q21UniSTS
Cytogenetic Map4p16.1UniSTS
Cytogenetic Map9q32UniSTS
Cytogenetic Map15q24UniSTS
Cytogenetic Map1p34.3UniSTS
Cytogenetic Map12q21UniSTS
Cytogenetic Map19q13.43UniSTS
Cytogenetic Map1p35-p34UniSTS
Cytogenetic Map9q34.1UniSTS
Cytogenetic Map9q22.2UniSTS
Cytogenetic MapXp22UniSTS
Cytogenetic Map13q14UniSTS
Cytogenetic Map2q33UniSTS
Cytogenetic Map16p12.2UniSTS
Cytogenetic Map10q11.23UniSTS
Cytogenetic Map20q13.31UniSTS
Cytogenetic Map3p25.2UniSTS
Cytogenetic Map5q11UniSTS
RH80030  
Human AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map4p16.1UniSTS
Cytogenetic Map16q24.3UniSTS
Cytogenetic Map19q13.2UniSTS
Cytogenetic Map19q13.42UniSTS
Cytogenetic MapXq26.1UniSTS
Cytogenetic Map17q21.2-q21.3UniSTS
Cytogenetic Map1q41UniSTS
Cytogenetic Map19p13.11UniSTS
Cytogenetic Map2p23.3UniSTS
Cytogenetic Map10q23.1UniSTS
Cytogenetic Map9q22.33UniSTS
Cytogenetic Map11p15.5UniSTS
Cytogenetic Map1q32.1UniSTS
Cytogenetic Map22q13.31UniSTS
Cytogenetic Map7q22.1UniSTS
Cytogenetic Map8p11.22UniSTS
Cytogenetic Map17q25.1UniSTS
Cytogenetic Map18p11.21UniSTS
Cytogenetic Map12q24.31UniSTS
Cytogenetic Map15q22.31UniSTS
Cytogenetic Map11q13.1UniSTS
Cytogenetic Map15q22.2UniSTS
Cytogenetic Map17q21UniSTS
Cytogenetic Map9p13UniSTS
Cytogenetic Map15q21UniSTS
Cytogenetic Map6p24.3UniSTS
Cytogenetic Map19q13.3-q13.4UniSTS
Cytogenetic Map1p35.1UniSTS
Cytogenetic Map11q23.1UniSTS
Cytogenetic Map19q13.3UniSTS
Cytogenetic Map22q13.2UniSTS
Cytogenetic Map17q11.2UniSTS
Cytogenetic Map6q23.3UniSTS
Cytogenetic Map3q26.33UniSTS
Cytogenetic Map5p13.2UniSTS
Cytogenetic Map12q15-q21UniSTS
Cytogenetic Map15q15.2UniSTS
Cytogenetic Map20p13UniSTS
Cytogenetic Map20q13.13UniSTS
Cytogenetic Map11q13.5UniSTS
Cytogenetic Map1p36.11-p34.2UniSTS
Cytogenetic Map15q26.1UniSTS
Cytogenetic Map2p22.2UniSTS
Cytogenetic Map3q13.13UniSTS
Cytogenetic Map6p21.1UniSTS
Cytogenetic Map2p11.2UniSTS
Cytogenetic Map9q34.11UniSTS
Cytogenetic Map12q13.12UniSTS
Cytogenetic Map5q31UniSTS
Cytogenetic Map17q21.31UniSTS
Cytogenetic Map9q33.3UniSTS
Cytogenetic Map1q25.3UniSTS
Cytogenetic Map19q13UniSTS
Cytogenetic Map20q13.31UniSTS
Cytogenetic Map19q13.41UniSTS
Cytogenetic Map7q34UniSTS
Cytogenetic Map11q22.2-q22.3UniSTS
Cytogenetic Map1p36-p35UniSTS
Cytogenetic MapXq25UniSTS
Cytogenetic Map3p21.31UniSTS
Cytogenetic Map1p36.21UniSTS
Cytogenetic Map11p11.2UniSTS
Cytogenetic Map10p15.3UniSTS
Cytogenetic Map1q42.3UniSTS
Cytogenetic Map4q35UniSTS
Cytogenetic Map19q13.12UniSTS
Cytogenetic Map2q33.1UniSTS
Cytogenetic Map16q24.1UniSTS
Cytogenetic Map18q21UniSTS
Cytogenetic Map10p11.23UniSTS
Cytogenetic Map2q37.3UniSTS
Cytogenetic Map10q26.13-q26.3UniSTS
Cytogenetic Map4p16.3UniSTS
Cytogenetic Map8q22.2UniSTS
Cytogenetic Map7q36.1UniSTS
Cytogenetic Map15q24.1UniSTS
Cytogenetic Map16q24UniSTS
Cytogenetic Map12q14.2UniSTS
Cytogenetic Map19q13.31UniSTS
Cytogenetic Map15q24UniSTS
Cytogenetic Map17q25.3UniSTS
Cytogenetic Map1p36.11UniSTS
Cytogenetic Map17q23.3UniSTS
Cytogenetic Map12p13UniSTS
Cytogenetic Map2q36.1UniSTS
Cytogenetic Map12p11.21UniSTS
Cytogenetic Map2q33UniSTS
Cytogenetic Map5q13.1UniSTS
Cytogenetic Map16p12.2UniSTS
Cytogenetic Map22q13.33UniSTS
Cytogenetic Map19q13.32UniSTS
Cytogenetic Map16q22.1UniSTS
Cytogenetic Map9q22.32UniSTS
Cytogenetic Map2q32.2UniSTS


Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
entire extraembryonic component
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
pharyngeal arch
renal system
reproductive system
respiratory system
sensory system
visual system
1204 2439 2788 2253 4974 1726 2351 6 624 1951 465 2270 7306 6472 53 3734 1 852 1744 1617 175 1

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_015710 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC008745 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF161389 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF182076 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF296124 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AI540063 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK024486 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK225915 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK297877 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK301117 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK303918 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK309788 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL122063 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL359335 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL359336 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY535000 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC004229 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC006311 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC007248 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC013203 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC013235 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC013307 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC014009 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC039869 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471126 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068259 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CX866974 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENST00000246802   ⟹   ENSP00000246802
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1947,745,546 - 47,757,058 (+)Ensembl
Ensembl Acc Id: ENST00000594182   ⟹   ENSP00000470773
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1947,755,474 - 47,757,057 (+)Ensembl
Ensembl Acc Id: ENST00000594525
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1947,745,551 - 47,752,709 (+)Ensembl
Ensembl Acc Id: ENST00000595143   ⟹   ENSP00000468948
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1947,750,178 - 47,757,005 (+)Ensembl
Ensembl Acc Id: ENST00000597985   ⟹   ENSP00000470263
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1947,750,246 - 47,757,058 (+)Ensembl
Ensembl Acc Id: ENST00000598285
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1947,756,530 - 47,757,048 (+)Ensembl
Ensembl Acc Id: ENST00000598681
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1947,745,565 - 47,756,744 (+)Ensembl
Ensembl Acc Id: ENST00000598959   ⟹   ENSP00000470190
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1947,751,037 - 47,757,058 (+)Ensembl
Ensembl Acc Id: ENST00000599253
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1947,745,573 - 47,746,686 (+)Ensembl
Ensembl Acc Id: ENST00000599582
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1947,745,891 - 47,752,553 (+)Ensembl
Ensembl Acc Id: ENST00000600266
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1947,750,236 - 47,751,522 (+)Ensembl
Ensembl Acc Id: ENST00000600410
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1947,745,565 - 47,757,057 (+)Ensembl
RefSeq Acc Id: NM_015710   ⟹   NP_056525
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381947,745,546 - 47,757,058 (+)NCBI
GRCh371948,248,793 - 48,260,323 (+)ENTREZGENE
Build 361952,940,620 - 52,952,127 (+)NCBI Archive
HuRef1944,675,424 - 44,686,829 (+)ENTREZGENE
CHM1_11948,251,102 - 48,262,632 (+)NCBI
T2T-CHM13v2.01950,576,356 - 50,587,868 (+)NCBI
Sequence:
RefSeq Acc Id: NP_056525   ⟸   NM_015710
- UniProtKB: Q9NPR4 (UniProtKB/Swiss-Prot),   Q9NPP1 (UniProtKB/Swiss-Prot),   Q9HAX6 (UniProtKB/Swiss-Prot),   Q9BTC6 (UniProtKB/Swiss-Prot),   Q9UFI2 (UniProtKB/Swiss-Prot),   Q9NZM5 (UniProtKB/Swiss-Prot),   Q53YP0 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSP00000468948   ⟸   ENST00000595143
Ensembl Acc Id: ENSP00000470263   ⟸   ENST00000597985
Ensembl Acc Id: ENSP00000470190   ⟸   ENST00000598959
Ensembl Acc Id: ENSP00000246802   ⟸   ENST00000246802
Ensembl Acc Id: ENSP00000470773   ⟸   ENST00000594182

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9NZM5-F1-model_v2 AlphaFold Q9NZM5 1-478 view protein structure

Promoters
RGD ID:13204905
Promoter ID:EPDNEW_H26035
Type:multiple initiation site
Name:GLTSCR2_1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh381947,745,550 - 47,745,610EPDNEW
RGD ID:6795599
Promoter ID:HG_KWN:30404
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   CD4+TCell_12Hour,   HeLa_S3,   Jurkat,   K562,   Lymphoblastoid,   NB4
Transcripts:UC002PHK.1,   UC002PHL.1,   UC002PHM.1,   UC010ELJ.1
Position:
Human AssemblyChrPosition (strand)Source
Build 361952,940,414 - 52,940,914 (+)MPROMDB
RGD ID:6853016
Promoter ID:EP74329
Type:initiation region
Name:HS_GLTSCR2
Description:Glioma tumor suppressor candidate region gene 2.
SO ACC ID:SO:0000170
Source:EPD (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Mammalian gene collection (MGC) full-length cDNA cloning
Position:
Human AssemblyChrPosition (strand)Source
Build 361952,940,635 - 52,940,695EPD
RGD ID:6795421
Promoter ID:HG_KWN:30406
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Jurkat,   NB4
Transcripts:ENST00000325566
Position:
Human AssemblyChrPosition (strand)Source
Build 361952,948,821 - 52,950,297 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:4333 AgrOrtholog
COSMIC NOP53 COSMIC
Ensembl Genes ENSG00000105373 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENST00000246802 ENTREZGENE
  ENST00000246802.10 UniProtKB/Swiss-Prot
  ENST00000594182.1 UniProtKB/TrEMBL
  ENST00000595143.5 UniProtKB/TrEMBL
  ENST00000597985.5 UniProtKB/TrEMBL
  ENST00000598959.5 UniProtKB/TrEMBL
GTEx ENSG00000105373 GTEx
HGNC ID HGNC:4333 ENTREZGENE
Human Proteome Map NOP53 Human Proteome Map
InterPro Nop53/GLTSCR2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report hsa:29997 UniProtKB/Swiss-Prot
NCBI Gene 29997 ENTREZGENE
OMIM 605691 OMIM
PANTHER PTHR14211 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RIBOSOME BIOGENESIS PROTEIN NOP53 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RIBOSOME BIOGENESIS PROTEIN NOP53 UniProtKB/TrEMBL
Pfam Nop53 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB PA28736 PharmGKB
PIRSF Gltscr2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt M0QX73_HUMAN UniProtKB/TrEMBL
  M0QYZ9_HUMAN UniProtKB/TrEMBL
  M0QZ34_HUMAN UniProtKB/TrEMBL
  M0QZU5_HUMAN UniProtKB/TrEMBL
  NOP53_HUMAN UniProtKB/Swiss-Prot
  Q53YP0 ENTREZGENE, UniProtKB/TrEMBL
  Q9BTC6 ENTREZGENE
  Q9HAX6 ENTREZGENE
  Q9NPP1 ENTREZGENE
  Q9NPR4 ENTREZGENE
  Q9NZM5 ENTREZGENE
  Q9UFI2 ENTREZGENE
UniProt Secondary Q9BTC6 UniProtKB/Swiss-Prot
  Q9HAX6 UniProtKB/Swiss-Prot
  Q9NPP1 UniProtKB/Swiss-Prot
  Q9NPR4 UniProtKB/Swiss-Prot
  Q9UFI2 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-03-07 NOP53  NOP53 ribosome biogenesis factor  GLTSCR2  glioma tumor suppressor candidate region gene 2  Symbol and/or name change 5135510 APPROVED