NEPRO (nucleolus and neural progenitor protein) - Rat Genome Database

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Gene: NEPRO (nucleolus and neural progenitor protein) Homo sapiens
Analyze
Symbol: NEPRO
Name: nucleolus and neural progenitor protein
RGD ID: 1352471
HGNC Page HGNC:24496
Description: Predicted to be involved in negative regulation of neuron differentiation and positive regulation of Notch signaling pathway. Predicted to be located in nucleolus. Predicted to be active in nucleus. Implicated in anauxetic dysplasia 3.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: ANXD3; C3orf17; chromosome 3 open reading frame 17; DKFZp434F2021; hypothetical protein LOC25871; NET17; uncharacterized protein C3orf17
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383113,002,444 - 113,019,671 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3113,002,444 - 113,019,861 (-)EnsemblGRCh38hg38GRCh38
GRCh373112,721,291 - 112,738,518 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 363114,203,981 - 114,221,245 (-)NCBINCBI36Build 36hg18NCBI36
Build 343114,206,457 - 114,221,203NCBI
Celera3111,129,629 - 111,146,889 (-)NCBICelera
Cytogenetic Map3q13.2NCBI
HuRef3110,104,836 - 110,122,102 (-)NCBIHuRef
CHM1_13112,684,833 - 112,702,093 (-)NCBICHM1_1
T2T-CHM13v2.03115,723,401 - 115,740,627 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
membrane  (IEA)
nucleolus  (IEA,ISS)
nucleus  (IBA,IEA,ISS)

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
Additional References at PubMed
PMID:14702039   PMID:15489334   PMID:16565220   PMID:19615732   PMID:19906856   PMID:20195357   PMID:21873635   PMID:23383273   PMID:24778252   PMID:24981860   PMID:26186194   PMID:26472758  
PMID:26472760   PMID:26496610   PMID:27926873   PMID:28514442   PMID:29180619   PMID:29395067   PMID:29509190   PMID:29568061   PMID:29778605   PMID:30021884   PMID:31048545   PMID:31091453  
PMID:31250547   PMID:31527615   PMID:32807901   PMID:33961781   PMID:34079125   PMID:34373451   PMID:35140242   PMID:35271311   PMID:35509820   PMID:35545034   PMID:35652658   PMID:35819319  
PMID:35850772   PMID:35915203   PMID:36424410   PMID:37536630   PMID:37689310   PMID:37827155  


Genomics

Comparative Map Data
NEPRO
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383113,002,444 - 113,019,671 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3113,002,444 - 113,019,861 (-)EnsemblGRCh38hg38GRCh38
GRCh373112,721,291 - 112,738,518 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 363114,203,981 - 114,221,245 (-)NCBINCBI36Build 36hg18NCBI36
Build 343114,206,457 - 114,221,203NCBI
Celera3111,129,629 - 111,146,889 (-)NCBICelera
Cytogenetic Map3q13.2NCBI
HuRef3110,104,836 - 110,122,102 (-)NCBIHuRef
CHM1_13112,684,833 - 112,702,093 (-)NCBICHM1_1
T2T-CHM13v2.03115,723,401 - 115,740,627 (-)NCBIT2T-CHM13v2.0
Nepro
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391644,544,645 - 44,559,994 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1644,544,664 - 44,557,647 (+)EnsemblGRCm39 Ensembl
GRCm381644,724,301 - 44,738,856 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1644,724,301 - 44,737,284 (+)EnsemblGRCm38mm10GRCm38
MGSCv371644,724,412 - 44,737,245 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361644,643,631 - 44,656,464 (+)NCBIMGSCv36mm8
Celera1645,084,903 - 45,097,735 (+)NCBICelera
Cytogenetic Map16B4NCBI
cM Map1629.04NCBI
Nepro
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81169,464,263 - 69,476,429 (-)NCBIGRCr8
mRatBN7.21155,958,265 - 55,970,432 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1155,958,267 - 55,970,432 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1164,771,935 - 64,784,100 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01157,433,786 - 57,445,951 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01156,504,113 - 56,516,278 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01160,919,477 - 60,931,642 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1160,919,453 - 60,931,794 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01165,032,119 - 65,044,284 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41157,497,040 - 57,509,205 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11157,554,630 - 57,566,794 (-)NCBI
Celera1155,521,866 - 55,534,031 (-)NCBICelera
Cytogenetic Map11q21NCBI
Nepro
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542713,233,970 - 13,248,013 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542713,232,375 - 13,247,164 (-)NCBIChiLan1.0ChiLan1.0
NEPRO
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22111,005,032 - 111,022,295 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13111,009,807 - 111,027,183 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03110,152,415 - 110,169,736 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13117,076,649 - 117,094,041 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3117,076,649 - 117,094,041 (-)Ensemblpanpan1.1panPan2
NEPRO
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13317,392,962 - 17,406,385 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3317,393,154 - 17,406,338 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3317,495,837 - 17,509,832 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03317,636,958 - 17,650,956 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3317,636,674 - 17,650,864 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13317,441,302 - 17,455,110 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03317,488,757 - 17,502,761 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03318,038,410 - 18,052,222 (-)NCBIUU_Cfam_GSD_1.0
Nepro
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405602136,866,719 - 136,881,289 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936536638,961 - 655,159 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936536641,085 - 655,177 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NEPRO
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13146,902,041 - 146,915,162 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.113146,902,010 - 146,914,755 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.213156,503,350 - 156,514,597 (+)NCBISscrofa10.2Sscrofa10.2susScr3
NEPRO
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12267,817,433 - 67,833,609 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2267,817,386 - 67,832,257 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604198,645,396 - 98,663,067 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Nepro
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473135,514,769 - 35,528,659 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473135,514,696 - 35,528,822 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in NEPRO
18 total Variants

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 3q13.2-13.31(chr3:112168829-117393356)x1 copy number loss See cases [RCV000050766] Chr3:112168829..117393356 [GRCh38]
Chr3:111887676..117112203 [GRCh37]
Chr3:113370366..118594893 [NCBI36]
Chr3:3q13.2-13.31
pathogenic
GRCh38/hg38 3q11.1-21.1(chr3:93886671-123216683)x1 copy number loss See cases [RCV000051543] Chr3:93886671..123216683 [GRCh38]
Chr3:93605515..122935530 [GRCh37]
Chr3:95088205..124418220 [NCBI36]
Chr3:3q11.1-21.1
pathogenic
GRCh38/hg38 3q13.13-13.31(chr3:108242572-116169331)x1 copy number loss See cases [RCV000051544] Chr3:108242572..116169331 [GRCh38]
Chr3:107961419..115888178 [GRCh37]
Chr3:109444109..117370868 [NCBI36]
Chr3:3q13.13-13.31
pathogenic
GRCh38/hg38 3q13.2-13.31(chr3:112479482-115774102)x1 copy number loss See cases [RCV000051545] Chr3:112479482..115774102 [GRCh38]
Chr3:112198329..115492949 [GRCh37]
Chr3:113681019..116975639 [NCBI36]
Chr3:3q13.2-13.31
pathogenic
GRCh38/hg38 3q13.11-13.31(chr3:104621220-116093884)x3 copy number gain See cases [RCV000051722] Chr3:104621220..116093884 [GRCh38]
Chr3:104340064..115812731 [GRCh37]
Chr3:105822754..117295421 [NCBI36]
Chr3:3q13.11-13.31
pathogenic
GRCh38/hg38 3q11.1-13.31(chr3:93819623-116887056)x1 copy number loss See cases [RCV000135320] Chr3:93819623..116887056 [GRCh38]
Chr3:93538467..116605903 [GRCh37]
Chr3:95021157..118088593 [NCBI36]
Chr3:3q11.1-13.31
pathogenic
GRCh38/hg38 3q13.11-29(chr3:103426882-198110178)x3 copy number gain See cases [RCV000134948] Chr3:103426882..198110178 [GRCh38]
Chr3:103145726..197837049 [GRCh37]
Chr3:104628416..199321446 [NCBI36]
Chr3:3q13.11-29
pathogenic
GRCh38/hg38 3q13.2-13.31(chr3:112465096-115774102)x1 copy number loss See cases [RCV000135592] Chr3:112465096..115774102 [GRCh38]
Chr3:112183943..115492949 [GRCh37]
Chr3:113666633..116975639 [NCBI36]
Chr3:3q13.2-13.31
likely pathogenic
GRCh38/hg38 3q11.2-13.31(chr3:97795369-115663349)x1 copy number loss See cases [RCV000138186] Chr3:97795369..115663349 [GRCh38]
Chr3:97514213..115382196 [GRCh37]
Chr3:98996903..116864886 [NCBI36]
Chr3:3q11.2-13.31
pathogenic|uncertain significance
GRCh38/hg38 3q13.2-13.31(chr3:112465094-115774111)x1 copy number loss See cases [RCV000138434] Chr3:112465094..115774111 [GRCh38]
Chr3:112183941..115492958 [GRCh37]
Chr3:113666631..116975648 [NCBI36]
Chr3:3q13.2-13.31
pathogenic
GRCh38/hg38 3q13.2-21.3(chr3:112620977-128734134)x1 copy number loss See cases [RCV000139033] Chr3:112620977..128734134 [GRCh38]
Chr3:112339824..128452977 [GRCh37]
Chr3:113822514..129935667 [NCBI36]
Chr3:3q13.2-21.3
pathogenic
GRCh38/hg38 3q11.1-24(chr3:93800620-145695381)x3 copy number gain See cases [RCV000142340] Chr3:93800620..145695381 [GRCh38]
Chr3:93519464..145413168 [GRCh37]
Chr3:95002154..146895858 [NCBI36]
Chr3:3q11.1-24
pathogenic
GRCh38/hg38 3q13.2-13.31(chr3:112425234-115795585)x1 copy number loss See cases [RCV000142219] Chr3:112425234..115795585 [GRCh38]
Chr3:112144081..115514432 [GRCh37]
Chr3:113626771..116997122 [NCBI36]
Chr3:3q13.2-13.31
pathogenic
GRCh38/hg38 3q13.2-13.33(chr3:112520553-120031022)x1 copy number loss See cases [RCV000142725] Chr3:112520553..120031022 [GRCh38]
Chr3:112239400..119749869 [GRCh37]
Chr3:113722090..121232559 [NCBI36]
Chr3:3q13.2-13.33
pathogenic
GRCh37/hg19 3q13.2-13.31(chr3:112144081-115514432)x1 copy number loss See cases [RCV000446223] Chr3:112144081..115514432 [GRCh37]
Chr3:3q13.2-13.31
pathogenic
GRCh37/hg19 3q13.11-13.32(chr3:105094834-117441953)x1 copy number loss See cases [RCV000448410] Chr3:105094834..117441953 [GRCh37]
Chr3:3q13.11-13.32
pathogenic
GRCh37/hg19 3q13.2-13.31(chr3:112590339-116461450)x1 copy number loss See cases [RCV000511086] Chr3:112590339..116461450 [GRCh37]
Chr3:3q13.2-13.31
pathogenic
GRCh37/hg19 3p26.3-q29(chr3:61892-197851986)x3 copy number gain See cases [RCV000511055] Chr3:61892..197851986 [GRCh37]
Chr3:3p26.3-q29
pathogenic
GRCh37/hg19 3p26.3-q29(chr3:61892-197851986) copy number gain See cases [RCV000512358] Chr3:61892..197851986 [GRCh37]
Chr3:3p26.3-q29
pathogenic
GRCh37/hg19 3q13.13-13.31(chr3:110645295-115103586)x1 copy number loss not provided [RCV000682294] Chr3:110645295..115103586 [GRCh37]
Chr3:3q13.13-13.31
pathogenic
GRCh37/hg19 3q13.2-13.31(chr3:111894832-116930109)x1 copy number loss not provided [RCV000682296] Chr3:111894832..116930109 [GRCh37]
Chr3:3q13.2-13.31
pathogenic
GRCh37/hg19 3p26.3-q29(chr3:61495-197838262)x3 copy number gain not provided [RCV000742138] Chr3:61495..197838262 [GRCh37]
Chr3:3p26.3-q29
pathogenic
GRCh37/hg19 3p26.3-q29(chr3:60174-197948027)x3 copy number gain not provided [RCV000742133] Chr3:60174..197948027 [GRCh37]
Chr3:3p26.3-q29
pathogenic
NM_015412.4(NEPRO):c.1069T>A (p.Phe357Ile) single nucleotide variant Anauxetic dysplasia 3 [RCV001554510]|not provided [RCV004716778] Chr3:113008337 [GRCh38]
Chr3:112727184 [GRCh37]
Chr3:3q13.2
benign
GRCh37/hg19 3q13.2-13.31(chr3:112183943-115492949)x1 copy number loss not provided [RCV000856645] Chr3:112183943..115492949 [GRCh37]
Chr3:3q13.2-13.31
pathogenic
GRCh37/hg19 3q13.2(chr3:111929014-112773945)x3 copy number gain not provided [RCV000846844] Chr3:111929014..112773945 [GRCh37]
Chr3:3q13.2
uncertain significance
NM_015412.4(NEPRO):c.976_978del deletion NEPRO-related disorder [RCV003910606]|not provided [RCV000892088] Chr3:113008428..113008430 [GRCh38]
Chr3:112727275..112727277 [GRCh37]
Chr3:3q13.2
benign|likely benign
GRCh37/hg19 3q13.2(chr3:111929014-112773945)x3 copy number gain not provided [RCV000847080] Chr3:111929014..112773945 [GRCh37]
Chr3:3q13.2
uncertain significance
NM_015412.4(NEPRO):c.397G>A (p.Glu133Lys) single nucleotide variant NEPRO-related disorder [RCV003926015]|not provided [RCV000954897] Chr3:113013348 [GRCh38]
Chr3:112732195 [GRCh37]
Chr3:3q13.2
benign|likely benign
NM_015412.4(NEPRO):c.889G>A (p.Val297Ile) single nucleotide variant not provided [RCV001532483] Chr3:113011069 [GRCh38]
Chr3:112729916 [GRCh37]
Chr3:3q13.2
likely benign
NM_015412.4(NEPRO):c.280C>T (p.Arg94Cys) single nucleotide variant Anauxetic dysplasia 3 [RCV001089593] Chr3:113014014 [GRCh38]
Chr3:112732861 [GRCh37]
Chr3:3q13.2
pathogenic|uncertain significance
NM_015412.4(NEPRO):c.435G>C (p.Leu145Phe) single nucleotide variant Anauxetic dysplasia 3 [RCV001089594] Chr3:113013310 [GRCh38]
Chr3:112732157 [GRCh37]
Chr3:3q13.2
pathogenic
NM_015412.4(NEPRO):c.106+71G>A single nucleotide variant Anauxetic dysplasia 3 [RCV001554511]|not provided [RCV004716779] Chr3:113019471 [GRCh38]
Chr3:112738318 [GRCh37]
Chr3:3q13.2
benign
GRCh37/hg19 3q13.2-13.31(chr3:112135341-115509260)x3 copy number gain not provided [RCV001259226] Chr3:112135341..115509260 [GRCh37]
Chr3:3q13.2-13.31
pathogenic
NM_015412.4(NEPRO):c.1529G>T (p.Gly510Val) single nucleotide variant Microcephaly [RCV001391282] Chr3:113005711 [GRCh38]
Chr3:112724558 [GRCh37]
Chr3:3q13.2
uncertain significance
NM_015412.4(NEPRO):c.1168G>A (p.Ala390Thr) single nucleotide variant Microcephaly [RCV001391283] Chr3:113008238 [GRCh38]
Chr3:112727085 [GRCh37]
Chr3:3q13.2
uncertain significance
GRCh37/hg19 3q13.2-13.31(chr3:112144081-115514432) copy number loss not specified [RCV002053367] Chr3:112144081..115514432 [GRCh37]
Chr3:3q13.2-13.31
pathogenic
GRCh37/hg19 3q13.12-13.31(chr3:106598767-115704696) copy number loss Chromosome 3q13.31 deletion syndrome [RCV002280741] Chr3:106598767..115704696 [GRCh37]
Chr3:3q13.12-13.31
pathogenic
GRCh37/hg19 3q13.12-13.31(chr3:107059705-115005256)x1 copy number loss not provided [RCV002472579] Chr3:107059705..115005256 [GRCh37]
Chr3:3q13.12-13.31
pathogenic
NM_015412.4(NEPRO):c.625G>A (p.Ala209Thr) single nucleotide variant not specified [RCV004102409] Chr3:113011333 [GRCh38]
Chr3:112730180 [GRCh37]
Chr3:3q13.2
uncertain significance
GRCh37/hg19 3q13.13-13.31(chr3:110966195-115843176)x1 copy number loss Chromosome 3q13.31 deletion syndrome [RCV003222552] Chr3:110966195..115843176 [GRCh37]
Chr3:3q13.13-13.31
pathogenic
GRCh38/hg38 3q11.1-21.2(chr3:93979547-124774010)x1 copy number loss Chromosome 3q13.31 deletion syndrome [RCV003327614] Chr3:93979547..124774010 [GRCh38]
Chr3:3q11.1-21.2
pathogenic
GRCh37/hg19 3q13.13-13.31(chr3:110398276-113879363)x1 copy number loss not provided [RCV003485398] Chr3:110398276..113879363 [GRCh37]
Chr3:3q13.13-13.31
uncertain significance
GRCh37/hg19 3q13.2(chr3:111845309-112880225)x3 copy number gain not provided [RCV003484141] Chr3:111845309..112880225 [GRCh37]
Chr3:3q13.2
uncertain significance
NM_015412.4(NEPRO):c.1374G>A (p.Gln458=) single nucleotide variant NEPRO-related disorder [RCV003919185]|not provided [RCV003437944] Chr3:113005866 [GRCh38]
Chr3:112724713 [GRCh37]
Chr3:3q13.2
benign
NM_015412.4(NEPRO):c.1353del (p.Leu451fs) deletion NEPRO-related disorder [RCV003429059] Chr3:113005887 [GRCh38]
Chr3:112724734 [GRCh37]
Chr3:3q13.2
uncertain significance
NM_015412.4(NEPRO):c.84G>A (p.Val28=) single nucleotide variant NEPRO-related disorder [RCV003929131]|not provided [RCV003433698] Chr3:113019564 [GRCh38]
Chr3:112738411 [GRCh37]
Chr3:3q13.2
likely benign
NM_015412.4(NEPRO):c.871G>A (p.Val291Met) single nucleotide variant NEPRO-related disorder [RCV003417138] Chr3:113011087 [GRCh38]
Chr3:112729934 [GRCh37]
Chr3:3q13.2
uncertain significance
NM_015412.4(NEPRO):c.*5T>C single nucleotide variant NEPRO-related disorder [RCV003924419] Chr3:113005531 [GRCh38]
Chr3:112724378 [GRCh37]
Chr3:3q13.2
likely benign
NM_015412.4(NEPRO):c.1031C>A (p.Ser344Tyr) single nucleotide variant NEPRO-related disorder [RCV003979237] Chr3:113008375 [GRCh38]
Chr3:112727222 [GRCh37]
Chr3:3q13.2
benign
NM_015412.4(NEPRO):c.852G>C (p.Lys284Asn) single nucleotide variant NEPRO-related disorder [RCV003957399] Chr3:113011106 [GRCh38]
Chr3:112729953 [GRCh37]
Chr3:3q13.2
uncertain significance
NM_015412.4(NEPRO):c.91C>T (p.Pro31Ser) single nucleotide variant NEPRO-related disorder [RCV003917059] Chr3:113019557 [GRCh38]
Chr3:112738404 [GRCh37]
Chr3:3q13.2
benign
NM_015412.4(NEPRO):c.243C>T (p.Pro81=) single nucleotide variant NEPRO-related disorder [RCV003954555] Chr3:113017466 [GRCh38]
Chr3:112736313 [GRCh37]
Chr3:3q13.2
likely benign
NM_015412.4(NEPRO):c.921A>G (p.Ser307=) single nucleotide variant NEPRO-related disorder [RCV003916799] Chr3:113010697 [GRCh38]
Chr3:112729544 [GRCh37]
Chr3:3q13.2
benign
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:7841
Count of miRNA genes:1140
Interacting mature miRNAs:1393
Transcripts:ENST00000314400, ENST00000383675, ENST00000393857, ENST00000460410, ENST00000461381, ENST00000462295, ENST00000464816, ENST00000469169, ENST00000469809, ENST00000470663, ENST00000472166, ENST00000472637, ENST00000472705, ENST00000472762, ENST00000473284, ENST00000474311, ENST00000482229, ENST00000486271, ENST00000489848, ENST00000491121, ENST00000494164, ENST00000494575, ENST00000494891, ENST00000496206, ENST00000496340
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Markers in Region
RH46087  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh373112,733,849 - 112,733,970UniSTSGRCh37
Build 363114,216,539 - 114,216,660RGDNCBI36
Celera3111,142,187 - 111,142,308RGD
Cytogenetic Map3q13.2UniSTS
HuRef3110,117,400 - 110,117,521UniSTS
GeneMap99-GB4 RH Map3403.97UniSTS
SHGC-77207  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh373112,723,531 - 112,723,744UniSTSGRCh37
Build 363114,206,221 - 114,206,434RGDNCBI36
Celera3111,131,869 - 111,132,082RGD
Cytogenetic Map3q13.2UniSTS
HuRef3110,107,081 - 110,107,294UniSTS
TNG Radiation Hybrid Map363706.0UniSTS
GeneMap99-GB4 RH Map3406.9UniSTS
NCBI RH Map3909.2UniSTS
SHGC-32187  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh373112,721,320 - 112,721,444UniSTSGRCh37
Build 363114,204,010 - 114,204,134RGDNCBI36
Celera3111,129,658 - 111,129,782RGD
Cytogenetic Map3q13.2UniSTS
HuRef3110,104,865 - 110,104,989UniSTS
Stanford-G3 RH Map34998.0UniSTS
GeneMap99-GB4 RH Map4448.71UniSTS
Whitehead-RH Map4493.4UniSTS
NCBI RH Map3906.4UniSTS
NCBI RH Map4984.8UniSTS
GeneMap99-G3 RH Map35468.0UniSTS
RH92227  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh373112,724,165 - 112,724,284UniSTSGRCh37
Build 363114,206,855 - 114,206,974RGDNCBI36
Celera3111,132,503 - 111,132,622RGD
Cytogenetic Map3q13.2UniSTS
HuRef3110,107,715 - 110,107,834UniSTS
GeneMap99-GB4 RH Map3405.37UniSTS
RH65022  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh373112,723,477 - 112,723,600UniSTSGRCh37
GRCh371810,719,946 - 10,720,067UniSTSGRCh37
Build 363114,206,167 - 114,206,290RGDNCBI36
Celera3111,131,815 - 111,131,938RGD
Celera1810,601,842 - 10,601,963UniSTS
Cytogenetic Map18p11.22UniSTS
Cytogenetic Map3q13.2UniSTS
HuRef3110,107,027 - 110,107,150UniSTS
HuRef1810,674,001 - 10,674,122UniSTS
SHGC-132456  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh373112,721,416 - 112,721,661UniSTSGRCh37
Build 363114,204,106 - 114,204,351RGDNCBI36
Celera3111,129,754 - 111,129,999RGD
Cytogenetic Map3q13.2UniSTS
HuRef3110,104,961 - 110,105,206UniSTS
TNG Radiation Hybrid Map363706.0UniSTS
SHGC-148248  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh373112,725,818 - 112,726,089UniSTSGRCh37
Build 363114,208,508 - 114,208,779RGDNCBI36
Celera3111,134,156 - 111,134,427RGD
Cytogenetic Map3q13.2UniSTS
HuRef3110,109,368 - 110,109,639UniSTS
TNG Radiation Hybrid Map363712.0UniSTS
SHGC-77208  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh373112,734,769 - 112,735,034UniSTSGRCh37
Build 363114,217,459 - 114,217,724RGDNCBI36
Celera3111,143,107 - 111,143,372RGD
Cytogenetic Map3q13.2UniSTS
HuRef3110,118,320 - 110,118,585UniSTS
TNG Radiation Hybrid Map363688.0UniSTS
GeneMap99-GB4 RH Map3406.9UniSTS
Cda1ac05  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh373112,735,819 - 112,736,014UniSTSGRCh37
Build 363114,218,509 - 114,218,704RGDNCBI36
Celera3111,144,153 - 111,144,348RGD
Cytogenetic Map3q13.2UniSTS
HuRef3110,119,366 - 110,119,561UniSTS
GeneMap99-GB4 RH Map3406.9UniSTS
NCBI RH Map3909.2UniSTS
RH44330  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh373112,721,302 - 112,721,484UniSTSGRCh37
Build 363114,203,992 - 114,204,174RGDNCBI36
Celera3111,129,640 - 111,129,822RGD
Cytogenetic Map3q13.2UniSTS
HuRef3110,104,847 - 110,105,029UniSTS
GeneMap99-GB4 RH Map3406.9UniSTS
WI-13462  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh373112,723,788 - 112,723,913UniSTSGRCh37
Build 363114,206,478 - 114,206,603RGDNCBI36
Celera3111,132,126 - 111,132,251RGD
Cytogenetic Map3q13.2UniSTS
HuRef3110,107,338 - 110,107,463UniSTS
GeneMap99-GB4 RH Map3395.5UniSTS
Whitehead-RH Map3506.1UniSTS
SHGC-33071  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh373112,736,725 - 112,736,874UniSTSGRCh37
Build 363114,219,415 - 114,219,564RGDNCBI36
Celera3111,145,059 - 111,145,208RGD
Cytogenetic Map3q13.2UniSTS
HuRef3110,120,272 - 110,120,421UniSTS
Stanford-G3 RH Map35003.0UniSTS
GeneMap99-GB4 RH Map3406.8UniSTS
Whitehead-RH Map3502.3UniSTS
NCBI RH Map3905.8UniSTS
GeneMap99-G3 RH Map35473.0UniSTS


Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
entire extraembryonic component
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
pharyngeal arch
renal system
reproductive system
respiratory system
sensory system
visual system
1204 2439 2788 2253 4974 1726 2351 6 624 1951 465 2270 7306 6472 53 3734 1 852 1744 1617 175 1

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001319109 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001319110 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001319111 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001319112 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001319114 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001319115 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_015412 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_134969 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005247276 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011512635 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011512636 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011512638 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017006102 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017006103 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047447904 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047447905 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054346026 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054346027 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054346028 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_241481 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC074044 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK024325 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK092546 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK293218 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK295165 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK295954 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK300811 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK301161 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK304022 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK304083 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL117573 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL537045 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC014673 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC056663 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC067743 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BM152568 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471052 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068275 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CR749341 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENST00000314400   ⟹   ENSP00000320251
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl3113,002,444 - 113,019,671 (-)Ensembl
Ensembl Acc Id: ENST00000383675   ⟹   ENSP00000373173
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl3113,002,444 - 113,019,733 (-)Ensembl
Ensembl Acc Id: ENST00000460410   ⟹   ENSP00000419462
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl3113,011,045 - 113,019,832 (-)Ensembl
Ensembl Acc Id: ENST00000461381   ⟹   ENSP00000418309
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl3113,005,944 - 113,019,671 (-)Ensembl
Ensembl Acc Id: ENST00000462295   ⟹   ENSP00000417734
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl3113,005,481 - 113,019,666 (-)Ensembl
Ensembl Acc Id: ENST00000464816
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl3113,010,504 - 113,011,275 (-)Ensembl
Ensembl Acc Id: ENST00000469169   ⟹   ENSP00000417968
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl3113,005,243 - 113,019,664 (-)Ensembl
Ensembl Acc Id: ENST00000469809   ⟹   ENSP00000420577
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl3113,004,954 - 113,019,658 (-)Ensembl
Ensembl Acc Id: ENST00000470663   ⟹   ENSP00000420505
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl3113,012,577 - 113,019,681 (-)Ensembl
Ensembl Acc Id: ENST00000472166   ⟹   ENSP00000417613
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl3113,013,275 - 113,019,160 (-)Ensembl
Ensembl Acc Id: ENST00000472637   ⟹   ENSP00000419716
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl3113,004,917 - 113,019,654 (-)Ensembl
Ensembl Acc Id: ENST00000472705   ⟹   ENSP00000418677
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl3113,005,176 - 113,019,664 (-)Ensembl
Ensembl Acc Id: ENST00000472762
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl3113,008,171 - 113,011,305 (-)Ensembl
Ensembl Acc Id: ENST00000473284   ⟹   ENSP00000417983
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl3113,005,243 - 113,019,861 (-)Ensembl
Ensembl Acc Id: ENST00000474311
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl3113,004,964 - 113,008,800 (-)Ensembl
Ensembl Acc Id: ENST00000482229
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl3113,008,171 - 113,011,536 (-)Ensembl
Ensembl Acc Id: ENST00000486271
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl3113,004,917 - 113,019,706 (-)Ensembl
Ensembl Acc Id: ENST00000489848   ⟹   ENSP00000420471
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl3113,005,322 - 113,019,670 (-)Ensembl
Ensembl Acc Id: ENST00000491121   ⟹   ENSP00000418902
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl3113,011,093 - 113,019,721 (-)Ensembl
Ensembl Acc Id: ENST00000494164   ⟹   ENSP00000419174
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl3113,011,056 - 113,019,851 (-)Ensembl
Ensembl Acc Id: ENST00000494575
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl3113,011,262 - 113,019,671 (-)Ensembl
Ensembl Acc Id: ENST00000494891
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl3113,012,539 - 113,019,603 (-)Ensembl
Ensembl Acc Id: ENST00000496206   ⟹   ENSP00000420036
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl3113,010,658 - 113,019,644 (-)Ensembl
Ensembl Acc Id: ENST00000496340   ⟹   ENSP00000418133
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl3113,012,793 - 113,019,671 (-)Ensembl
RefSeq Acc Id: NM_001319109   ⟹   NP_001306038
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh383113,002,444 - 113,019,671 (-)NCBI
CHM1_13112,684,833 - 112,702,118 (-)NCBI
T2T-CHM13v2.03115,723,401 - 115,740,627 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001319110   ⟹   NP_001306039
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh383113,002,444 - 113,019,671 (-)NCBI
CHM1_13112,684,833 - 112,702,118 (-)NCBI
T2T-CHM13v2.03115,723,401 - 115,740,627 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001319111   ⟹   NP_001306040
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh383113,002,444 - 113,019,671 (-)NCBI
CHM1_13112,684,833 - 112,702,118 (-)NCBI
T2T-CHM13v2.03115,723,401 - 115,740,627 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001319112   ⟹   NP_001306041
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh383113,002,444 - 113,019,671 (-)NCBI
CHM1_13112,684,833 - 112,702,118 (-)NCBI
T2T-CHM13v2.03115,723,401 - 115,740,627 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001319114   ⟹   NP_001306043
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh383113,002,444 - 113,019,671 (-)NCBI
CHM1_13112,684,833 - 112,702,118 (-)NCBI
T2T-CHM13v2.03115,723,401 - 115,740,627 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001319115   ⟹   NP_001306044
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh383113,002,444 - 113,019,671 (-)NCBI
CHM1_13112,684,833 - 112,702,118 (-)NCBI
T2T-CHM13v2.03115,723,401 - 115,740,627 (-)NCBI
Sequence:
RefSeq Acc Id: NM_015412   ⟹   NP_056227
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh383113,002,444 - 113,019,671 (-)NCBI
GRCh373112,721,291 - 112,738,555 (-)RGD
Build 363114,203,981 - 114,221,245 (-)NCBI Archive
Celera3111,129,629 - 111,146,889 (-)RGD
HuRef3110,104,836 - 110,122,102 (-)ENTREZGENE
CHM1_13112,684,833 - 112,702,093 (-)NCBI
T2T-CHM13v2.03115,723,401 - 115,740,627 (-)NCBI
Sequence:
RefSeq Acc Id: NR_134969
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh383113,002,444 - 113,019,671 (-)NCBI
CHM1_13112,684,833 - 112,702,118 (-)NCBI
T2T-CHM13v2.03115,723,401 - 115,740,627 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011512638   ⟹   XP_011510940
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh383113,002,444 - 113,014,032 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017006102   ⟹   XP_016861591
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh383113,004,917 - 113,019,671 (-)NCBI
Sequence:
RefSeq Acc Id: XM_047447904   ⟹   XP_047303860
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh383113,002,444 - 113,019,409 (-)NCBI
RefSeq Acc Id: XM_047447905   ⟹   XP_047303861
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh383113,008,171 - 113,019,671 (-)NCBI
RefSeq Acc Id: XM_054346026   ⟹   XP_054202001
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.03115,723,401 - 115,740,627 (-)NCBI
RefSeq Acc Id: XM_054346027   ⟹   XP_054202002
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.03115,723,401 - 115,734,992 (-)NCBI
RefSeq Acc Id: XM_054346028   ⟹   XP_054202003
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.03115,729,130 - 115,740,627 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001306038 (Get FASTA)   NCBI Sequence Viewer  
  NP_001306039 (Get FASTA)   NCBI Sequence Viewer  
  NP_001306040 (Get FASTA)   NCBI Sequence Viewer  
  NP_001306041 (Get FASTA)   NCBI Sequence Viewer  
  NP_001306043 (Get FASTA)   NCBI Sequence Viewer  
  NP_001306044 (Get FASTA)   NCBI Sequence Viewer  
  NP_056227 (Get FASTA)   NCBI Sequence Viewer  
  XP_011510940 (Get FASTA)   NCBI Sequence Viewer  
  XP_016861591 (Get FASTA)   NCBI Sequence Viewer  
  XP_047303860 (Get FASTA)   NCBI Sequence Viewer  
  XP_047303861 (Get FASTA)   NCBI Sequence Viewer  
  XP_054202001 (Get FASTA)   NCBI Sequence Viewer  
  XP_054202002 (Get FASTA)   NCBI Sequence Viewer  
  XP_054202003 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH67743 (Get FASTA)   NCBI Sequence Viewer  
  BAB14885 (Get FASTA)   NCBI Sequence Viewer  
  BAG56757 (Get FASTA)   NCBI Sequence Viewer  
  BAG58177 (Get FASTA)   NCBI Sequence Viewer  
  BAG58735 (Get FASTA)   NCBI Sequence Viewer  
  BAG62467 (Get FASTA)   NCBI Sequence Viewer  
  BAG62751 (Get FASTA)   NCBI Sequence Viewer  
  BAG64937 (Get FASTA)   NCBI Sequence Viewer  
  BAG64990 (Get FASTA)   NCBI Sequence Viewer  
  CAB55998 (Get FASTA)   NCBI Sequence Viewer  
  CAH18194 (Get FASTA)   NCBI Sequence Viewer  
  EAW79648 (Get FASTA)   NCBI Sequence Viewer  
  EAW79649 (Get FASTA)   NCBI Sequence Viewer  
  EAW79650 (Get FASTA)   NCBI Sequence Viewer  
  EAW79651 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSP00000320251
  ENSP00000320251.5
  ENSP00000373173
  ENSP00000373173.2
  ENSP00000417613.1
  ENSP00000417734.1
  ENSP00000417968.1
  ENSP00000417983.1
  ENSP00000418133.1
  ENSP00000418309.1
  ENSP00000418677.1
  ENSP00000418902.1
  ENSP00000419174.1
  ENSP00000419462.1
  ENSP00000419716.1
  ENSP00000420036.1
  ENSP00000420471.1
  ENSP00000420505.1
  ENSP00000420577.1
GenBank Protein Q6NW34 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_056227   ⟸   NM_015412
- Peptide Label: isoform a
- UniProtKB: Q9H7U0 (UniProtKB/Swiss-Prot),   Q68DM6 (UniProtKB/Swiss-Prot),   D3DN69 (UniProtKB/Swiss-Prot),   Q9UFM4 (UniProtKB/Swiss-Prot),   Q6NW34 (UniProtKB/Swiss-Prot),   B4E228 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011510940   ⟸   XM_011512638
- Peptide Label: isoform X3
- UniProtKB: B4DUV5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001306039   ⟸   NM_001319110
- Peptide Label: isoform e
- UniProtKB: B4DJ73 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001306041   ⟸   NM_001319112
- Peptide Label: isoform g
- UniProtKB: B4DHL5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001306040   ⟸   NM_001319111
- Peptide Label: isoform f
- UniProtKB: B4DUV5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001306044   ⟸   NM_001319115
- Peptide Label: isoform c
- UniProtKB: B4E228 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001306043   ⟸   NM_001319114
- Peptide Label: isoform b
- UniProtKB: B4DVN9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001306038   ⟸   NM_001319109
- Peptide Label: isoform d
- UniProtKB: B4DJ73 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_016861591   ⟸   XM_017006102
- Peptide Label: isoform X2
- Sequence:
Ensembl Acc Id: ENSP00000418902   ⟸   ENST00000491121
Ensembl Acc Id: ENSP00000420577   ⟸   ENST00000469809
Ensembl Acc Id: ENSP00000419174   ⟸   ENST00000494164
Ensembl Acc Id: ENSP00000417968   ⟸   ENST00000469169
Ensembl Acc Id: ENSP00000420036   ⟸   ENST00000496206
Ensembl Acc Id: ENSP00000418133   ⟸   ENST00000496340
Ensembl Acc Id: ENSP00000420505   ⟸   ENST00000470663
Ensembl Acc Id: ENSP00000320251   ⟸   ENST00000314400
Ensembl Acc Id: ENSP00000417613   ⟸   ENST00000472166
Ensembl Acc Id: ENSP00000419716   ⟸   ENST00000472637
Ensembl Acc Id: ENSP00000418677   ⟸   ENST00000472705
Ensembl Acc Id: ENSP00000417983   ⟸   ENST00000473284
Ensembl Acc Id: ENSP00000419462   ⟸   ENST00000460410
Ensembl Acc Id: ENSP00000420471   ⟸   ENST00000489848
Ensembl Acc Id: ENSP00000418309   ⟸   ENST00000461381
Ensembl Acc Id: ENSP00000417734   ⟸   ENST00000462295
Ensembl Acc Id: ENSP00000373173   ⟸   ENST00000383675
RefSeq Acc Id: XP_047303860   ⟸   XM_047447904
- Peptide Label: isoform X1
RefSeq Acc Id: XP_047303861   ⟸   XM_047447905
- Peptide Label: isoform X4
RefSeq Acc Id: XP_054202001   ⟸   XM_054346026
- Peptide Label: isoform X2
RefSeq Acc Id: XP_054202002   ⟸   XM_054346027
- Peptide Label: isoform X3
RefSeq Acc Id: XP_054202003   ⟸   XM_054346028
- Peptide Label: isoform X4
Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q6NW34-F1-model_v2 AlphaFold Q6NW34 1-567 view protein structure

Promoters
RGD ID:6865264
Promoter ID:EPDNEW_H5797
Type:initiation region
Name:C3orf17_1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh383113,019,666 - 113,019,726EPDNEW
RGD ID:6800840
Promoter ID:HG_KWN:45842
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   CD4+TCell_12Hour,   CD4+TCell_2Hour,   HeLa_S3,   K562,   Lymphoblastoid,   NB4
Transcripts:ENST00000314400,   ENST00000383675,   ENST00000393857,   UC003DZT.1,   UC010HQG.1,   UC010HQH.1
Position:
Human AssemblyChrPosition (strand)Source
Build 363114,220,694 - 114,221,194 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:24496 AgrOrtholog
COSMIC NEPRO COSMIC
Ensembl Genes ENSG00000163608 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENST00000314400 ENTREZGENE
  ENST00000314400.10 UniProtKB/Swiss-Prot
  ENST00000383675 ENTREZGENE
  ENST00000383675.6 UniProtKB/Swiss-Prot
  ENST00000460410.5 UniProtKB/TrEMBL
  ENST00000461381.5 UniProtKB/TrEMBL
  ENST00000462295.5 UniProtKB/TrEMBL
  ENST00000469169.5 UniProtKB/TrEMBL
  ENST00000469809.5 UniProtKB/TrEMBL
  ENST00000470663.1 UniProtKB/TrEMBL
  ENST00000472166.1 UniProtKB/TrEMBL
  ENST00000472637.5 UniProtKB/TrEMBL
  ENST00000472705.5 UniProtKB/TrEMBL
  ENST00000473284.5 UniProtKB/TrEMBL
  ENST00000486271 ENTREZGENE
  ENST00000489848.5 UniProtKB/TrEMBL
  ENST00000491121.1 UniProtKB/TrEMBL
  ENST00000494164.5 UniProtKB/TrEMBL
  ENST00000496206.5 UniProtKB/TrEMBL
  ENST00000496340.1 UniProtKB/TrEMBL
GTEx ENSG00000163608 GTEx
HGNC ID HGNC:24496 ENTREZGENE
Human Proteome Map NEPRO Human Proteome Map
InterPro DUF4477 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Nepro-associated UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report hsa:25871 UniProtKB/Swiss-Prot
NCBI Gene 25871 ENTREZGENE
OMIM 617089 OMIM
PANTHER NUCLEOLUS AND NEURAL PROGENITOR PROTEIN UniProtKB/Swiss-Prot
  NUCLEOLUS AND NEURAL PROGENITOR PROTEIN UniProtKB/Swiss-Prot
  NUCLEOLUS AND NEURAL PROGENITOR PROTEIN UniProtKB/TrEMBL
  NUCLEOLUS AND NEURAL PROGENITOR PROTEIN UniProtKB/TrEMBL
Pfam DUF4477 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB PA134948355 PharmGKB
UniProt B4DHL5 ENTREZGENE, UniProtKB/TrEMBL
  B4DJ73 ENTREZGENE, UniProtKB/TrEMBL
  B4DUV5 ENTREZGENE, UniProtKB/TrEMBL
  B4DVN9 ENTREZGENE, UniProtKB/TrEMBL
  B4E228 ENTREZGENE, UniProtKB/TrEMBL
  C9J9E3_HUMAN UniProtKB/TrEMBL
  D3DN69 ENTREZGENE
  E9PFF8_HUMAN UniProtKB/TrEMBL
  F2Z3E4_HUMAN UniProtKB/TrEMBL
  F8WBQ8_HUMAN UniProtKB/TrEMBL
  F8WC60_HUMAN UniProtKB/TrEMBL
  F8WDL7_HUMAN UniProtKB/TrEMBL
  NEPRO_HUMAN UniProtKB/Swiss-Prot
  Q68DM6 ENTREZGENE
  Q6NW34 ENTREZGENE
  Q9H7U0 ENTREZGENE
  Q9UFM4 ENTREZGENE
UniProt Secondary D3DN69 UniProtKB/Swiss-Prot
  Q68DM6 UniProtKB/Swiss-Prot
  Q9H7U0 UniProtKB/Swiss-Prot
  Q9UFM4 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-05-24 NEPRO  nucleolus and neural progenitor protein  C3orf17  chromosome 3 open reading frame 17  Symbol and/or name change 5135510 APPROVED