XK (X-linked Kx blood group antigen, Kell and VPS13A binding protein) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: XK (X-linked Kx blood group antigen, Kell and VPS13A binding protein) Homo sapiens
Analyze
Symbol: XK
Name: X-linked Kx blood group antigen, Kell and VPS13A binding protein
RGD ID: 1351512
HGNC Page HGNC:12811
Description: Enables protein-macromolecule adaptor activity. Predicted to be involved in amino acid transport. Predicted to act upstream of or within several processes, including intracellular monoatomic cation homeostasis; regulation of axon diameter; and skeletal muscle fiber development. Located in endoplasmic reticulum membrane and plasma membrane. Implicated in McLeod syndrome and hematopoietic system disease.
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: endoplasmic reticulum membrane adapter protein XK; Kell blood group precursor (McLeod phenotype); kell complex 37 kDa component; KX; Kx antigen; Kx blood group antigen; MCLDS; membrane transport protein XK; NA; NAC; neuroacanthocytosis; neurocanthocytosis; truncated X-linked Kx blood group; X-linked Kx blood group; X1k; XK, Kell blood group complex subunit (McLeod syndrome); XK-related protein 1; XKR1
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X37,685,791 - 37,732,130 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX37,685,791 - 37,732,130 (+)EnsemblGRCh38hg38GRCh38
GRCh37X37,545,044 - 37,591,383 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36X37,430,052 - 37,476,322 (+)NCBINCBI36Build 36hg18NCBI36
Build 34X37,301,324 - 37,347,594NCBI
CeleraX41,682,795 - 41,729,061 (+)NCBICelera
Cytogenetic MapXp21.1NCBI
HuRefX35,290,888 - 35,336,107 (+)NCBIHuRef
CHM1_1X37,576,264 - 37,622,522 (+)NCBICHM1_1
T2T-CHM13v2.0X37,089,348 - 37,135,703 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. GOAs Human GO annotations GOA_HUMAN data from the GO Consortium
2. Isolation of the gene for McLeod syndrome that encodes a novel membrane transport protein. Ho M, etal., Cell 1994 Jun 17;77(6):869-80.
3. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
6. RGD HPO Phenotype Annotation Pipeline RGD automated import pipeline for human HPO-to-gene-to-disease annotations
Additional References at PubMed
PMID:871435   PMID:1191546   PMID:3358422   PMID:7737196   PMID:8619554   PMID:9074432   PMID:9593744   PMID:9647734   PMID:9784384   PMID:10426139   PMID:10556484   PMID:10849386  
PMID:11261514   PMID:11703337   PMID:11761473   PMID:11961232   PMID:12477932   PMID:12775719   PMID:12823753   PMID:15107016   PMID:15489334   PMID:17081983   PMID:17302777   PMID:17379193  
PMID:17469188   PMID:19322201   PMID:19380743   PMID:20301334   PMID:20301528   PMID:21145924   PMID:21463873   PMID:21988832   PMID:24635891   PMID:24816235   PMID:26308465   PMID:32845802  
PMID:33961781   PMID:35583604   PMID:35994651   PMID:39324427  


Genomics

Comparative Map Data
XK
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X37,685,791 - 37,732,130 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX37,685,791 - 37,732,130 (+)EnsemblGRCh38hg38GRCh38
GRCh37X37,545,044 - 37,591,383 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36X37,430,052 - 37,476,322 (+)NCBINCBI36Build 36hg18NCBI36
Build 34X37,301,324 - 37,347,594NCBI
CeleraX41,682,795 - 41,729,061 (+)NCBICelera
Cytogenetic MapXp21.1NCBI
HuRefX35,290,888 - 35,336,107 (+)NCBIHuRef
CHM1_1X37,576,264 - 37,622,522 (+)NCBICHM1_1
T2T-CHM13v2.0X37,089,348 - 37,135,703 (+)NCBIT2T-CHM13v2.0
Xk
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X9,139,023 - 9,179,484 (+)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX9,138,995 - 9,179,489 (+)EnsemblGRCm39 Ensembl
GRCm38X9,272,784 - 9,313,245 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX9,272,756 - 9,313,250 (+)EnsemblGRCm38mm10GRCm38
MGSCv37X8,849,910 - 8,890,371 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X8,429,873 - 8,468,132 (+)NCBIMGSCv36mm8
CeleraX7,012,285 - 7,052,336 (+)NCBICelera
Cytogenetic MapXA1.1NCBI
cM MapX4.22NCBI
Xk
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X16,108,913 - 16,145,322 (-)NCBIGRCr8
mRatBN7.2X13,436,412 - 13,472,830 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX13,436,418 - 13,472,830 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_UtxX13,623,720 - 13,660,104 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X17,120,655 - 17,157,035 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X13,377,235 - 13,413,615 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X14,497,376 - 14,534,479 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX14,498,119 - 14,534,473 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X15,278,669 - 15,315,169 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X25,591,152 - 25,624,913 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1X25,644,621 - 25,678,382 (-)NCBI
CeleraX13,951,523 - 13,985,552 (+)NCBICelera
Cytogenetic MapXq12NCBI
Xk
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955587668,070 - 728,959 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955587668,871 - 725,829 (+)NCBIChiLan1.0ChiLan1.0
XK
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X39,334,500 - 39,381,063 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X39,337,936 - 39,384,437 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X30,136,046 - 30,182,541 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X37,846,539 - 37,892,348 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX37,846,539 - 37,892,348 (+)Ensemblpanpan1.1panPan2
XK
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X32,453,404 - 32,498,145 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX32,453,570 - 32,495,110 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_TashaX19,801,126 - 19,845,752 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0X32,491,214 - 32,543,437 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 EnsemblX32,491,295 - 32,540,402 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1X32,578,961 - 32,624,840 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X32,544,040 - 32,588,642 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X32,592,018 - 32,636,881 (+)NCBIUU_Cfam_GSD_1.0
Xk
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X24,691,389 - 24,745,510 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365024,532,100 - 4,587,439 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365024,532,100 - 4,584,931 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
XK
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX33,544,731 - 33,602,574 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X33,544,287 - 33,602,576 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X37,205,690 - 37,263,628 (+)NCBISscrofa10.2Sscrofa10.2susScr3
XK
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Vero_WHO_p1.0NW_02366605638,148,973 - 38,193,937 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Xk
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476217,856,731 - 17,914,938 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476217,856,746 - 17,915,975 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in XK
78 total Variants

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
NM_021083.4(XK):c.508+1G>A single nucleotide variant McLeod neuroacanthocytosis syndrome [RCV000010418] ChrX:37694549 [GRCh38]
ChrX:37553802 [GRCh37]
ChrX:Xp21.1
pathogenic
NM_021083.4(XK):c.509-1G>A single nucleotide variant McLeod neuroacanthocytosis syndrome [RCV000010419] ChrX:37727635 [GRCh38]
ChrX:37586888 [GRCh37]
ChrX:Xp21.1
pathogenic
XK, 1-BP DEL deletion McLeod neuroacanthocytosis syndrome [RCV000010420] ChrX:Xp21.2-p21.1 pathogenic
NM_021083.4(XK):c.1013del (p.Phe338fs) deletion McLeod neuroacanthocytosis syndrome [RCV000010421] ChrX:37728137 [GRCh38]
ChrX:37587390 [GRCh37]
ChrX:Xp21.1
pathogenic
NM_021083.4(XK):c.880T>C (p.Cys294Arg) single nucleotide variant McLeod neuroacanthocytosis syndrome [RCV000010422] ChrX:37728007 [GRCh38]
ChrX:37587260 [GRCh37]
ChrX:Xp21.1
pathogenic
NM_021083.4(XK):c.938_951del (p.Asn313fs) deletion McLeod neuroacanthocytosis syndrome [RCV000010423] ChrX:37728063..37728076 [GRCh38]
ChrX:37587316..37587329 [GRCh37]
ChrX:Xp21.1
pathogenic
NM_021083.4(XK):c.941G>A (p.Trp314Ter) single nucleotide variant McLeod neuroacanthocytosis syndrome [RCV000010424] ChrX:37728068 [GRCh38]
ChrX:37587321 [GRCh37]
ChrX:Xp21.1
pathogenic
NM_021083.4(XK):c.895C>T (p.Gln299Ter) single nucleotide variant McLeod neuroacanthocytosis syndrome [RCV000010425] ChrX:37728022 [GRCh38]
ChrX:37587275 [GRCh37]
ChrX:Xp21.1
pathogenic
NM_021083.2(XK):c.245+750A>T single nucleotide variant Lung cancer [RCV000102588] ChrX:37686956 [GRCh38]
ChrX:37546209 [GRCh37]
ChrX:Xp21.1
uncertain significance
GRCh38/hg38 Xp22.33-q28(chrX:3092486-155699618)x2 copy number gain See cases [RCV000050889] ChrX:3092486..155699618 [GRCh38]
ChrX:3010527..154929279 [GRCh37]
ChrX:3020527..154582473 [NCBI36]
ChrX:Xp22.33-q28
pathogenic
GRCh38/hg38 Xp22.33-q28(chrX:20140-155699618)x3 copy number gain See cases [RCV000050810] ChrX:20140..155699618 [GRCh38]
ChrX:70140..154929279 [GRCh37]
ChrX:10140..154582473 [NCBI36]
ChrX:Xp22.33-q28
pathogenic
GRCh38/hg38 Xp22.33-q28(chrX:20140-155699618)x1 copy number loss See cases [RCV000050811] ChrX:20140..155699618 [GRCh38]
ChrX:70140..154929279 [GRCh37]
ChrX:10140..154582473 [NCBI36]
ChrX:Xp22.33-q28
pathogenic
GRCh38/hg38 Xp22.33-q28(chrX:10679-156022206)x1 copy number loss See cases [RCV000050699] ChrX:10679..156022206 [GRCh38]
ChrX:60679..155251871 [GRCh37]
ChrX:679..154905065 [NCBI36]
ChrX:Xp22.33-q28
pathogenic|conflicting interpretations of pathogenicity|conflicting data from submitters
GRCh38/hg38 Xp22.33-q28(chrX:10679-156013167)x3 copy number gain Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000050385]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000050385]|See cases [RCV000050385] ChrX:10679..156013167 [GRCh38]
ChrX:60679..155242832 [GRCh37]
ChrX:Xp22.33-q28
pathogenic
GRCh38/hg38 Xp22.33-q28(chrX:10679-156013167)x1 copy number loss Global developmental delay [RCV000050386]|See cases [RCV000050386] ChrX:10679..156013167 [GRCh38]
ChrX:60679..155242832 [GRCh37]
ChrX:Xp22.33-q28
pathogenic
GRCh38/hg38 Xp22.33-q28(chrX:10679-156022206)x3 copy number gain See cases [RCV000050697] ChrX:10679..156022206 [GRCh38]
ChrX:60679..155251871 [GRCh37]
ChrX:679..154905065 [NCBI36]
ChrX:Xp22.33-q28
pathogenic|conflicting interpretations of pathogenicity|conflicting data from submitters
GRCh38/hg38 Xp22.33-11.22(chrX:10679-52809182)x1 copy number loss See cases [RCV000051026] ChrX:10679..52809182 [GRCh38]
ChrX:60679..52838206 [GRCh37]
ChrX:679..52854931 [NCBI36]
ChrX:Xp22.33-11.22
pathogenic
GRCh38/hg38 Xp22.33-q28(chrX:26101-155999293)x3 copy number gain See cases [RCV000052322] ChrX:26101..155999293 [GRCh38]
ChrX:76101..155228958 [GRCh37]
ChrX:16101..154882152 [NCBI36]
ChrX:Xp22.33-q28
pathogenic
GRCh38/hg38 Xp22.33-q28(chrX:2790845-155699618)x3 copy number gain See cases [RCV000052359] ChrX:2790845..155699618 [GRCh38]
ChrX:2708886..154929279 [GRCh37]
ChrX:2718886..154582473 [NCBI36]
ChrX:Xp22.33-q28
pathogenic
GRCh38/hg38 Xp22.33-q28(chrX:237659-156022362)x3 copy number gain Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000052327]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000052327]|See cases [RCV000052327] ChrX:237659..156022362 [GRCh38]
ChrX:154326..155252027 [GRCh37]
ChrX:94326..154905221 [NCBI36]
ChrX:Xp22.33-q28
pathogenic
GRCh38/hg38 Xp22.33-q28(chrX:27245-155996431)x3 copy number gain See cases [RCV000052324] ChrX:27245..155996431 [GRCh38]
ChrX:77245..155226096 [GRCh37]
ChrX:17245..154879290 [NCBI36]
ChrX:Xp22.33-q28
pathogenic
GRCh38/hg38 Xp22.33-11.3(chrX:675360-46016699)x3 copy number gain See cases [RCV000052328] ChrX:675360..46016699 [GRCh38]
ChrX:636095..45876134 [GRCh37]
ChrX:556095..45761078 [NCBI36]
ChrX:Xp22.33-11.3
pathogenic
GRCh38/hg38 Xp22.33-q28(chrX:40704-156022362)x3 copy number gain See cases [RCV000052325] ChrX:40704..156022362 [GRCh38]
ChrX:90704..155252027 [GRCh37]
ChrX:30704..154905221 [NCBI36]
ChrX:Xp22.33-q28
pathogenic
GRCh38/hg38 Xp22.11-11.4(chrX:22420237-38834728)x1 copy number loss See cases [RCV000053063] ChrX:22420237..38834728 [GRCh38]
ChrX:22438354..38693981 [GRCh37]
ChrX:22348275..38578925 [NCBI36]
ChrX:Xp22.11-11.4
pathogenic
GRCh38/hg38 Xp21.1-11.4(chrX:31665506-37921988)x0 copy number loss See cases [RCV000053080] ChrX:31665506..37921988 [GRCh38]
ChrX:31683623..37781241 [GRCh37]
ChrX:31593544..37666185 [NCBI36]
ChrX:Xp21.1-11.4
pathogenic
GRCh38/hg38 Xp22.33-q28(chrX:26102-155996431)x1 copy number loss Global developmental delay [RCV000052986]|Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000052987]|Intellectual functioning disability [RCV000052988]|Global developmental delay [RCV000052989]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000052987]|See cases [RCV000052986] ChrX:26102..155996431 [GRCh38]
ChrX:76102..155226096 [GRCh37]
ChrX:Xp22.33-q28
pathogenic
GRCh38/hg38 Xp22.33-q22.1(chrX:675360-100368517)x1 copy number loss See cases [RCV000053005] ChrX:675360..100368517 [GRCh38]
ChrX:636095..99623515 [GRCh37]
ChrX:556095..99510171 [NCBI36]
ChrX:Xp22.33-q22.1
pathogenic
GRCh38/hg38 Xp22.33-11.23(chrX:10679-48344725)x1 copy number loss See cases [RCV000052981] ChrX:10679..48344725 [GRCh38]
ChrX:60679..48204160 [GRCh37]
ChrX:679..48089104 [NCBI36]
ChrX:Xp22.33-11.23
pathogenic
GRCh38/hg38 Xp22.33-q28(chrX:14245-155999293)x1 copy number loss Hypoplastic left heart [RCV000052982]|See cases [RCV000052982] ChrX:14245..155999293 [GRCh38]
ChrX:64245..155228958 [GRCh37]
ChrX:Xp22.33-q28
pathogenic
GRCh38/hg38 Xp22.33-11.21(chrX:2769041-58055036)x1 copy number loss See cases [RCV000053007] ChrX:2769041..58055036 [GRCh38]
ChrX:2687082..58081470 [GRCh37]
ChrX:2697082..58098195 [NCBI36]
ChrX:Xp22.33-11.21
pathogenic
GRCh38/hg38 Xp22.33-11.21(chrX:26102-57302794)x1 copy number loss See cases [RCV000052990] ChrX:26102..57302794 [GRCh38]
ChrX:76102..57329227 [GRCh37]
ChrX:16102..57345952 [NCBI36]
ChrX:Xp22.33-11.21
pathogenic
GRCh38/hg38 Xp22.33-11.1(chrX:253129-58271563)x1 copy number loss See cases [RCV000052994] ChrX:253129..58271563 [GRCh38]
ChrX:169796..58297997 [GRCh37]
ChrX:109796..58314722 [NCBI36]
ChrX:Xp22.33-11.1
pathogenic
GRCh38/hg38 Xp22.33-q28(chrX:26102-155996431)x3 copy number gain Global developmental delay [RCV000052984]|Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000052985]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000052985]|See cases [RCV000052984] ChrX:26102..155996431 [GRCh38]
ChrX:76102..155226096 [GRCh37]
ChrX:Xp22.33-q28
pathogenic
GRCh38/hg38 Xp22.33-11.21(chrX:10679-55550898)x1 copy number loss Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000052971]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000052971]|See cases [RCV000052971] ChrX:10679..55550898 [GRCh38]
ChrX:60679..55577331 [GRCh37]
ChrX:679..55594056 [NCBI36]
ChrX:Xp22.33-11.21
pathogenic
GRCh38/hg38 Xp22.33-11.22(chrX:10479-54179172)x3 copy number gain See cases [RCV000053817] ChrX:10479..54179172 [GRCh38]
ChrX:60479..53957191 [GRCh37]
ChrX:479..54222330 [NCBI36]
ChrX:Xp22.33-11.22
pathogenic
GRCh38/hg38 Xp22.33-q28(chrX:10679-156022826)x4 copy number gain See cases [RCV000133654] ChrX:10679..156022826 [GRCh38]
ChrX:60679..155252491 [GRCh37]
ChrX:679..154905685 [NCBI36]
ChrX:Xp22.33-q28
pathogenic
GRCh38/hg38 Xp22.33-11.22(chrX:10701-52857805)x1 copy number loss See cases [RCV000133817] ChrX:10701..52857805 [GRCh38]
ChrX:60701..52886834 [GRCh37]
ChrX:701..52903559 [NCBI36]
ChrX:Xp22.33-11.22
pathogenic
GRCh38/hg38 Xp22.33-q28(chrX:10701-155978689)x1 copy number loss See cases [RCV000133792] ChrX:10701..155978689 [GRCh38]
ChrX:60701..155208354 [GRCh37]
ChrX:701..154861548 [NCBI36]
ChrX:Xp22.33-q28
pathogenic
GRCh38/hg38 Xp22.33-q28(chrX:10679-156013167)x1 copy number loss See cases [RCV000050386] ChrX:10679..156013167 [GRCh38]
ChrX:60679..155242832 [GRCh37]
ChrX:679..154896026 [NCBI36]
ChrX:Xp22.33-q28
pathogenic
GRCh38/hg38 Xp22.33-q28(chrX:10679-156013167)x3 copy number gain See cases [RCV000050385] ChrX:10679..156013167 [GRCh38]
ChrX:60679..155242832 [GRCh37]
ChrX:679..154896026 [NCBI36]
ChrX:Xp22.33-q28
pathogenic
GRCh38/hg38 Xp22.33-q28(chrX:14245-155999293)x1 copy number loss See cases [RCV000052982] ChrX:14245..155999293 [GRCh38]
ChrX:64245..155228958 [GRCh37]
ChrX:4245..154882152 [NCBI36]
ChrX:Xp22.33-q28
pathogenic
GRCh38/hg38 Xp22.33-q28(chrX:26102-155996431)x3 copy number gain See cases [RCV000052984] ChrX:26102..155996431 [GRCh38]
ChrX:76102..155226096 [GRCh37]
ChrX:16102..154879290 [NCBI36]
ChrX:Xp22.33-q28
pathogenic
GRCh38/hg38 Xp22.33-q28(chrX:26102-155996431)x1 copy number loss See cases [RCV000052986] ChrX:26102..155996431 [GRCh38]
ChrX:76102..155226096 [GRCh37]
ChrX:16102..154879290 [NCBI36]
ChrX:Xp22.33-q28
pathogenic
GRCh38/hg38 Xp22.33-11.23(chrX:10679-50059388)x1 copy number loss See cases [RCV000133745] ChrX:10679..50059388 [GRCh38]
ChrX:60679..49824045 [GRCh37]
ChrX:679..49710785 [NCBI36]
ChrX:Xp22.33-11.23
pathogenic
GRCh38/hg38 Xp22.33-q28(chrX:20297-155999253)x3 copy number gain See cases [RCV000134564] ChrX:20297..155999253 [GRCh38]
ChrX:70297..155228918 [GRCh37]
ChrX:10297..154882112 [NCBI36]
ChrX:Xp22.33-q28
pathogenic
GRCh38/hg38 Xp22.33-q11.1(chrX:10701-62712219)x1 copy number loss See cases [RCV000134568] ChrX:10701..62712219 [GRCh38]
ChrX:60701..61931689 [GRCh37]
ChrX:701..61848414 [NCBI36]
ChrX:Xp22.33-q11.1
pathogenic
GRCh38/hg38 Xp22.33-11.21(chrX:10701-58055053)x1 copy number loss See cases [RCV000134026] ChrX:10701..58055053 [GRCh38]
ChrX:60701..58081487 [GRCh37]
ChrX:701..58098212 [NCBI36]
ChrX:Xp22.33-11.21
pathogenic
GRCh38/hg38 Xp22.33-q28(chrX:10701-156003242)x1 copy number loss See cases [RCV000133947] ChrX:10701..156003242 [GRCh38]
ChrX:60701..155232907 [GRCh37]
ChrX:701..154886101 [NCBI36]
ChrX:Xp22.33-q28
pathogenic|conflicting interpretations of pathogenicity|conflicting data from submitters
GRCh38/hg38 Xp22.33-q28(chrX:10701-156003242)x3 copy number gain See cases [RCV000133911] ChrX:10701..156003242 [GRCh38]
ChrX:60701..155232907 [GRCh37]
ChrX:701..154886101 [NCBI36]
ChrX:Xp22.33-q28
pathogenic|likely pathogenic|conflicting data from submitters
GRCh38/hg38 Xp21.1-q28(chrX:37076284-156016920)x1 copy number loss See cases [RCV000135300] ChrX:37076284..156016920 [GRCh38]
ChrX:37094357..155246585 [GRCh37]
ChrX:37004278..154899779 [NCBI36]
ChrX:Xp21.1-q28
pathogenic
GRCh38/hg38 Xp22.31-11.22(chrX:8176030-53962833)x1 copy number loss See cases [RCV000135305] ChrX:8176030..53962833 [GRCh38]
ChrX:8144071..53989266 [GRCh37]
ChrX:8104071..54005991 [NCBI36]
ChrX:Xp22.31-11.22
pathogenic
GRCh38/hg38 Xp22.33-q28(chrX:20297-156026127)x1 copy number loss See cases [RCV000135321] ChrX:20297..156026127 [GRCh38]
ChrX:70297..155255792 [GRCh37]
ChrX:10297..154908986 [NCBI36]
ChrX:Xp22.33-q28
pathogenic
GRCh38/hg38 Xp22.33-11.22(chrX:10679-52857805)x3 copy number gain See cases [RCV000134957] ChrX:10679..52857805 [GRCh38]
ChrX:60679..52886834 [GRCh37]
ChrX:679..52903559 [NCBI36]
ChrX:Xp22.33-11.22
pathogenic
GRCh38/hg38 Xp21.1-q28(chrX:36237706-156022206)x1 copy number loss See cases [RCV000135552] ChrX:36237706..156022206 [GRCh38]
ChrX:36255823..155251871 [GRCh37]
ChrX:36165744..154905065 [NCBI36]
ChrX:Xp21.1-q28
pathogenic
GRCh38/hg38 Xp22.33-q28(chrX:10701-156003229)x1 copy number loss See cases [RCV000136097] ChrX:10701..156003229 [GRCh38]
ChrX:60701..155232894 [GRCh37]
ChrX:701..154886088 [NCBI36]
ChrX:Xp22.33-q28
pathogenic
GRCh38/hg38 Xp22.33-q28(chrX:40904-155998166)x1 copy number loss See cases [RCV000136478] ChrX:40904..155998166 [GRCh38]
ChrX:90904..155227831 [GRCh37]
ChrX:30904..154881025 [NCBI36]
ChrX:Xp22.33-q28
pathogenic
GRCh38/hg38 Xp22.33-q25(chrX:10701-128393708) copy number loss See cases [RCV000136094] ChrX:10701..128393708 [GRCh38]
ChrX:60701..127527686 [GRCh37]
ChrX:701..127355367 [NCBI36]
ChrX:Xp22.33-q25
pathogenic
GRCh38/hg38 Xp22.33-q28(chrX:10001-156030895)x1 copy number loss See cases [RCV000136005] ChrX:10001..156030895 [GRCh38]
ChrX:60001..155260560 [GRCh37]
ChrX:1..154913754 [NCBI36]
ChrX:Xp22.33-q28
pathogenic
GRCh38/hg38 Xp22.33-q13.3(chrX:10679-76420505)x3 copy number gain See cases [RCV000137137] ChrX:10679..76420505 [GRCh38]
ChrX:60679..75640898 [GRCh37]
ChrX:679..75557302 [NCBI36]
ChrX:Xp22.33-q13.3
pathogenic|likely benign
GRCh38/hg38 Xp22.33-11.22(chrX:10679-52213731)x1 copy number loss See cases [RCV000137112] ChrX:10679..52213731 [GRCh38]
ChrX:60679..51948998 [GRCh37]
ChrX:679..51973598 [NCBI36]
ChrX:Xp22.33-11.22
pathogenic|uncertain significance
GRCh38/hg38 Xp21.1-11.4(chrX:37723259-38263335)x2 copy number gain See cases [RCV000136935] ChrX:37723259..38263335 [GRCh38]
ChrX:37669767..38122588 [GRCh37]
ChrX:37467451..38007532 [NCBI36]
ChrX:Xp21.1-11.4
uncertain significance
GRCh38/hg38 Xp22.33-q28(chrX:2782275-155611794)x2 copy number gain See cases [RCV000136841] ChrX:2782275..155611794 [GRCh38]
ChrX:2700316..154785891 [GRCh37]
ChrX:2710316..154494649 [NCBI36]
ChrX:Xp22.33-q28
pathogenic
GRCh38/hg38 Xp22.33-q28(chrX:2765636-155522304)x3 copy number gain See cases [RCV000136791] ChrX:2765636..155522304 [GRCh38]
ChrX:2683677..154751965 [GRCh37]
ChrX:2693677..154405159 [NCBI36]
ChrX:Xp22.33-q28
pathogenic
GRCh38/hg38 Xp22.33-11.22(chrX:10701-52033734)x1 copy number loss See cases [RCV000137430] ChrX:10701..52033734 [GRCh38]
ChrX:60701..51776830 [GRCh37]
ChrX:701..51793570 [NCBI36]
ChrX:Xp22.33-11.22
pathogenic
GRCh38/hg38 Xp22.33-11.21(chrX:10701-58055036)x1 copy number loss See cases [RCV000137552] ChrX:10701..58055036 [GRCh38]
ChrX:60701..58081470 [GRCh37]
ChrX:701..58098195 [NCBI36]
ChrX:Xp22.33-11.21
pathogenic
GRCh38/hg38 Xp22.33-11.23(chrX:10679-49157514)x1 copy number loss See cases [RCV000137166] ChrX:10679..49157514 [GRCh38]
ChrX:60679..49016667 [GRCh37]
ChrX:679..48903611 [NCBI36]
ChrX:Xp22.33-11.23
pathogenic
GRCh38/hg38 Xp22.33-11.23(chrX:10701-49071220)x1 copy number loss See cases [RCV000137413] ChrX:10701..49071220 [GRCh38]
ChrX:60701..48928877 [GRCh37]
ChrX:701..48815821 [NCBI36]
ChrX:Xp22.33-11.23
pathogenic
GRCh38/hg38 Xp21.1-11.4(chrX:37564515-37871920)x2 copy number gain See cases [RCV000137210] ChrX:37564515..37871920 [GRCh38]
ChrX:37308687..37616117 [NCBI36]
ChrX:Xp21.1-11.4
benign
GRCh38/hg38 Xp22.33-21.1(chrX:10701-37723318)x1 copy number loss See cases [RCV000138019] ChrX:10701..37723318 [GRCh38]
ChrX:60701..37318587 [GRCh37]
ChrX:701..37467510 [NCBI36]
ChrX:Xp22.33-21.1
pathogenic
GRCh38/hg38 Xp21.3-11.4(chrX:28234352-37850186)x3 copy number gain See cases [RCV000138078] ChrX:28234352..37850186 [GRCh38]
ChrX:28252469..37709439 [GRCh37]
ChrX:28162390..37594383 [NCBI36]
ChrX:Xp21.3-11.4
likely pathogenic|uncertain significance
GRCh38/hg38 Xp22.33-q22.3(chrX:10701-106113403)x1 copy number loss See cases [RCV000137886] ChrX:10701..106113403 [GRCh38]
ChrX:60701..105357395 [GRCh37]
ChrX:701..105244051 [NCBI36]
ChrX:Xp22.33-q22.3
pathogenic
GRCh38/hg38 Xp22.2-q27.3(chrX:13020141-143473520)x1 copy number loss See cases [RCV000138678] ChrX:13020141..143473520 [GRCh38]
ChrX:13038260..142561303 [GRCh37]
ChrX:12948181..142388969 [NCBI36]
ChrX:Xp22.2-q27.3
pathogenic
GRCh38/hg38 Xp21.1(chrX:37581547-37703226)x2 copy number gain See cases [RCV000138242] ChrX:37581547..37703226 [GRCh38]
ChrX:37325721..37447418 [NCBI36]
ChrX:Xp21.1
uncertain significance
GRCh38/hg38 Xp22.33-11.1(chrX:10701-58517661)x1 copy number loss See cases [RCV000139343] ChrX:10701..58517661 [GRCh38]
ChrX:60701..58544094 [GRCh37]
ChrX:701..58560819 [NCBI36]
ChrX:Xp22.33-11.1
pathogenic
GRCh38/hg38 Xp22.33-q28(chrX:1085618-155699644)x1 copy number loss See cases [RCV000139278] ChrX:1085618..155699644 [GRCh38]
ChrX:1118268..154929305 [GRCh37]
ChrX:1038268..154582499 [NCBI36]
ChrX:Xp22.33-q28
pathogenic
GRCh38/hg38 Xp22.33-q21.31(chrX:10701-88318651)x1 copy number loss See cases [RCV000139352] ChrX:10701..88318651 [GRCh38]
ChrX:60701..87573652 [GRCh37]
ChrX:701..87460308 [NCBI36]
ChrX:Xp22.33-q21.31
pathogenic
GRCh38/hg38 Xp22.33-q28(chrX:251880-156004181)x3 copy number gain See cases [RCV000139888] ChrX:251880..156004181 [GRCh38]
ChrX:168547..155233846 [GRCh37]
ChrX:108547..154887040 [NCBI36]
ChrX:Xp22.33-q28
pathogenic
GRCh38/hg38 Xp22.33-11.4(chrX:3909315-38682287)x3 copy number gain See cases [RCV000141261] ChrX:3909315..38682287 [GRCh38]
ChrX:3827356..38541541 [GRCh37]
ChrX:3837356..38426485 [NCBI36]
ChrX:Xp22.33-11.4
uncertain significance
GRCh38/hg38 Xp22.33-q28(chrX:2299223-155992188)x3 copy number gain See cases [RCV000141400] ChrX:2299223..155992188 [GRCh38]
ChrX:2217264..155221853 [GRCh37]
ChrX:2227264..154875047 [NCBI36]
ChrX:Xp22.33-q28
pathogenic
GRCh38/hg38 Xp22.33-q28(chrX:20297-156016920)x3 copy number gain See cases [RCV000141401] ChrX:20297..156016920 [GRCh38]
ChrX:70297..155246585 [GRCh37]
ChrX:10297..154899779 [NCBI36]
ChrX:Xp22.33-q28
pathogenic
GRCh38/hg38 Xp22.33-q28(chrX:251880-156004066)x4 copy number gain See cases [RCV000140786] ChrX:251880..156004066 [GRCh38]
ChrX:168547..155233731 [GRCh37]
ChrX:Xp22.33-q28
pathogenic
GRCh38/hg38 Xp22.33-11.22(chrX:10701-53750424)x1 copy number loss See cases [RCV000140711] ChrX:10701..53750424 [GRCh38]
ChrX:60701..53776922 [GRCh37]
ChrX:701..53793647 [NCBI36]
ChrX:Xp22.33-11.22
pathogenic
GRCh38/hg38 Xp22.33-q28(chrX:251880-156004066)x1 copy number loss See cases [RCV000140787] ChrX:251880..156004066 [GRCh38]
ChrX:168547..155233731 [GRCh37]
ChrX:Xp22.33-q28
pathogenic|conflicting data from submitters
GRCh38/hg38 Xp22.33-11.22(chrX:251879-50289363)x1 copy number loss See cases [RCV000141741] ChrX:251879..50289363 [GRCh38]
ChrX:168546..50032363 [GRCh37]
ChrX:108546..50049103 [NCBI36]
ChrX:Xp22.33-11.22
pathogenic
GRCh38/hg38 Xp22.33-q12(chrX:251880-66445845)x1 copy number loss See cases [RCV000142334] ChrX:251880..66445845 [GRCh38]
ChrX:168547..65665687 [GRCh37]
ChrX:108547..65582412 [NCBI36]
ChrX:Xp22.33-q12
pathogenic
GRCh38/hg38 Xp22.33-11.22(chrX:251880-51643625)x1 copy number loss See cases [RCV000142035] ChrX:251880..51643625 [GRCh38]
ChrX:168547..51386559 [GRCh37]
ChrX:108547..51403299 [NCBI36]
ChrX:Xp22.33-11.22
pathogenic
GRCh38/hg38 Xp22.33-q24(chrX:251879-118847157)x3 copy number gain See cases [RCV000142134] ChrX:251879..118847157 [GRCh38]
ChrX:168546..117981120 [GRCh37]
ChrX:108546..117865148 [NCBI36]
ChrX:Xp22.33-q24
pathogenic
GRCh38/hg38 Xp22.33-q28(chrX:10701-156003229)x3 copy number gain See cases [RCV000142625] ChrX:10701..156003229 [GRCh38]
ChrX:60701..155232894 [GRCh37]
ChrX:701..154886088 [NCBI36]
ChrX:Xp22.33-q28
pathogenic
GRCh38/hg38 Xp22.33-q28(chrX:251879-156004066)x1 copy number loss See cases [RCV000143441] ChrX:251879..156004066 [GRCh38]
ChrX:168546..155233731 [GRCh37]
ChrX:108546..154886925 [NCBI36]
ChrX:Xp22.33-q28
pathogenic
GRCh38/hg38 Xp22.33-q28(chrX:251879-156004066)x3 copy number gain See cases [RCV000143433] ChrX:251879..156004066 [GRCh38]
ChrX:168546..155233731 [GRCh37]
ChrX:Xp22.33-q28
pathogenic
GRCh38/hg38 Xp22.33-11.22(chrX:10701-53131191)x1 copy number loss See cases [RCV000143348] ChrX:10701..53131191 [GRCh38]
ChrX:60701..53047381 [GRCh37]
ChrX:701..53177098 [NCBI36]
ChrX:Xp22.33-11.22
pathogenic
GRCh38/hg38 Xp22.33-q28(chrX:251880-156004066)x3 copy number gain See cases [RCV000143219] ChrX:251880..156004066 [GRCh38]
ChrX:168547..155233731 [GRCh37]
ChrX:108547..154886925 [NCBI36]
ChrX:Xp22.33-q28
pathogenic
GRCh38/hg38 Xp22.33-11.21(chrX:251879-56428859)x1 copy number loss See cases [RCV000143130] ChrX:251879..56428859 [GRCh38]
ChrX:168546..56455292 [GRCh37]
ChrX:108546..56472017 [NCBI36]
ChrX:Xp22.33-11.21
pathogenic
GRCh38/hg38 Xp21.3-11.4(chrX:28218244-37855706)x3 copy number gain See cases [RCV000143685] ChrX:28218244..37855706 [GRCh38]
ChrX:28236361..37714959 [GRCh37]
ChrX:28146282..37599903 [NCBI36]
ChrX:Xp21.3-11.4
uncertain significance
GRCh38/hg38 Xp22.33-q28(chrX:10679-156022206)x3 copy number gain See cases [RCV000148141] ChrX:10679..156022206 [GRCh38]
ChrX:60679..155251871 [GRCh37]
ChrX:679..154905065 [NCBI36]
ChrX:Xp22.33-q28
pathogenic
GRCh38/hg38 Xp22.33-q28(chrX:10679-156022206)x1 copy number loss See cases [RCV000148135] ChrX:10679..156022206 [GRCh38]
ChrX:60679..155251871 [GRCh37]
ChrX:679..154905065 [NCBI36]
ChrX:Xp22.33-q28
pathogenic
GRCh37/hg19 Xp22.33-q28(chrX:71267-155246643)x3 copy number gain See cases [RCV000240122] ChrX:71267..155246643 [GRCh37]
ChrX:Xp22.33-q28
pathogenic
GRCh37/hg19 Xp22.33-q28(chrX:176426-155250222)x3 copy number gain See cases [RCV000239843] ChrX:176426..155250222 [GRCh37]
ChrX:Xp22.33-q28
pathogenic
GRCh37/hg19 Xp22.2-q28(chrX:13147668-155250222)x3 copy number gain See cases [RCV000239798] ChrX:13147668..155250222 [GRCh37]
ChrX:Xp22.2-q28
pathogenic
GRCh37/hg19 Xp22.33-q28(chrX:71267-155255839)x1 copy number loss See cases [RCV000239832] ChrX:71267..155255839 [GRCh37]
ChrX:Xp22.33-q28
pathogenic
GRCh37/hg19 Xp22.33-11.21(chrX:70297-58066465)x1 copy number loss See cases [RCV000239814] ChrX:70297..58066465 [GRCh37]
ChrX:Xp22.33-11.21
pathogenic
GRCh37/hg19 Xp22.33-11.21(chrX:70297-58066465)x3 copy number gain See cases [RCV000239834] ChrX:70297..58066465 [GRCh37]
ChrX:Xp22.33-11.21
pathogenic
GRCh37/hg19 Xp22.33-q28(chrX:60701-155246271)x3 copy number gain See cases [RCV000239989] ChrX:60701..155246271 [GRCh37]
ChrX:Xp22.33-q28
pathogenic
GRCh37/hg19 Xp22.33-q28(chrX:71267-155224766)x1 copy number loss See cases [RCV000239902] ChrX:71267..155224766 [GRCh37]
ChrX:Xp22.33-q28
pathogenic
GRCh37/hg19 Xp22.33-q28(chrX:150002-155234036)x2 copy number gain See cases [RCV000240106] ChrX:150002..155234036 [GRCh37]
ChrX:Xp22.33-q28
pathogenic
GRCh37/hg19 Xp22.33-q28(chrX:71267-155234036)x2 copy number gain See cases [RCV000239874] ChrX:71267..155234036 [GRCh37]
ChrX:Xp22.33-q28
pathogenic
GRCh37/hg19 Xp22.33-q28(chrX:70297-155255839)x3 copy number gain See cases [RCV000239934] ChrX:70297..155255839 [GRCh37]
ChrX:Xp22.33-q28
pathogenic
GRCh37/hg19 Xp22.33-q28(chrX:225816-155234036)x2 copy number gain See cases [RCV000240464] ChrX:225816..155234036 [GRCh37]
ChrX:Xp22.33-q28
pathogenic
GRCh37/hg19 Xp22.33-q28(chrX:150002-155234036)x3 copy number gain See cases [RCV000240314] ChrX:150002..155234036 [GRCh37]
ChrX:Xp22.33-q28
pathogenic
GRCh37/hg19 Xp22.33-q28(chrX:2707626-155250222)x2 copy number gain See cases [RCV000240541] ChrX:2707626..155250222 [GRCh37]
ChrX:Xp22.33-q28
pathogenic
GRCh37/hg19 Xp22.33-q28(chrX:176426-155236656)x3 copy number gain See cases [RCV000240552] ChrX:176426..155236656 [GRCh37]
ChrX:Xp22.33-q28
pathogenic
GRCh37/hg19 Xp22.2-q25(chrX:11692290-121187337)x2 copy number gain not provided [RCV000488046] ChrX:11692290..121187337 [GRCh37]
ChrX:Xp22.2-q25
uncertain significance
GRCh37/hg19 Xp22.33-11.21(chrX:60814-55476165)x1 copy number loss not provided [RCV000753275] ChrX:60814..55476165 [GRCh37]
ChrX:Xp22.33-11.21
pathogenic
GRCh37/hg19 Xp22.33-11.23(chrX:60814-48317386)x1 copy number loss not provided [RCV000753273] ChrX:60814..48317386 [GRCh37]
ChrX:Xp22.33-11.23
pathogenic
GRCh37/hg19 Xp22.33-q28(chrX:168546-155233731)x3 copy number gain See cases [RCV000449330] ChrX:168546..155233731 [GRCh37]
ChrX:Xp22.33-q28
pathogenic
GRCh37/hg19 Xp22.33-11.3(chrX:168546-43917011)x3 copy number gain See cases [RCV000449393] ChrX:168546..43917011 [GRCh37]
ChrX:Xp22.33-11.3
pathogenic
GRCh37/hg19 Xp22.33-q28(chrX:70297-155255792) copy number loss See cases [RCV000449461] ChrX:70297..155255792 [GRCh37]
ChrX:Xp22.33-q28
pathogenic
GRCh37/hg19 Xp22.33-q28(chrX:168546-154930047)x3 copy number gain See cases [RCV000449437] ChrX:168546..154930047 [GRCh37]
ChrX:Xp22.33-q28
pathogenic
GRCh37/hg19 Xp22.33-q28(chrX:71267-155255792)x1 copy number loss See cases [RCV000446197] ChrX:71267..155255792 [GRCh37]
ChrX:Xp22.33-q28
pathogenic
GRCh37/hg19 Xp22.33-11.21(chrX:168546-55529093)x1 copy number loss See cases [RCV000446584] ChrX:168546..55529093 [GRCh37]
ChrX:Xp22.33-11.21
pathogenic
GRCh37/hg19 Xp22.33-q28(chrX:2703632-155233731)x1 copy number loss See cases [RCV000446712] ChrX:2703632..155233731 [GRCh37]
ChrX:Xp22.33-q28
pathogenic
GRCh37/hg19 Xp22.33-11.21(chrX:168546-56684082)x1 copy number loss See cases [RCV000447092] ChrX:168546..56684082 [GRCh37]
ChrX:Xp22.33-11.21
pathogenic
GRCh37/hg19 Xp22.33-q28(chrX:318707-155224707)x1 copy number loss See cases [RCV000446667] ChrX:318707..155224707 [GRCh37]
ChrX:Xp22.33-q28
pathogenic
GRCh37/hg19 Xp22.33-11.22(chrX:168546-52573789)x1 copy number loss See cases [RCV000447470] ChrX:168546..52573789 [GRCh37]
ChrX:Xp22.33-11.22
pathogenic
GRCh37/hg19 Xp22.33-q28(chrX:168546-155233731)x4 copy number gain See cases [RCV000446932] ChrX:168546..155233731 [GRCh37]
ChrX:Xp22.33-q28
pathogenic
GRCh37/hg19 Xp22.33-q28(chrX:168546-155196888)x3 copy number gain See cases [RCV000446310] ChrX:168546..155196888 [GRCh37]
ChrX:Xp22.33-q28
pathogenic
GRCh37/hg19 Xp22.33-q28(chrX:168546-155081533)x3 copy number gain See cases [RCV000447253] ChrX:168546..155081533 [GRCh37]
ChrX:Xp22.33-q28
pathogenic
GRCh37/hg19 Xp22.33-q28(chrX:60701-155246225)x3 copy number gain See cases [RCV000446270] ChrX:60701..155246225 [GRCh37]
ChrX:Xp22.33-q28
pathogenic
GRCh37/hg19 Xp22.33-q28(chrX:553069-155233731)x1 copy number loss See cases [RCV000446026] ChrX:553069..155233731 [GRCh37]
ChrX:Xp22.33-q28
pathogenic
GRCh37/hg19 Xp22.33-q28(chrX:168566-155233731)x1 copy number loss See cases [RCV000445720] ChrX:168566..155233731 [GRCh37]
ChrX:Xp22.33-q28
pathogenic
GRCh37/hg19 Xp21.1-11.3(chrX:36667388-44316141)x1 copy number loss See cases [RCV000446005] ChrX:36667388..44316141 [GRCh37]
ChrX:Xp21.1-11.3
pathogenic
GRCh37/hg19 Xp22.33-q28(chrX:168546-155233731)x1 copy number loss See cases [RCV000448393] ChrX:168546..155233731 [GRCh37]
ChrX:Xp22.33-q28
pathogenic
GRCh37/hg19 Xp22.33-q28(chrX:70297-155255792)x4 copy number gain See cases [RCV000448034] ChrX:70297..155255792 [GRCh37]
ChrX:Xp22.33-q28
pathogenic
GRCh37/hg19 Xp22.33-11.1(chrX:168546-58140271)x1 copy number loss See cases [RCV000447773] ChrX:168546..58140271 [GRCh37]
ChrX:Xp22.33-11.1
pathogenic
GRCh37/hg19 Xp22.33-q28(chrX:70297-155246585)x1 copy number loss See cases [RCV000448652] ChrX:70297..155246585 [GRCh37]
ChrX:Xp22.33-q28
pathogenic
GRCh37/hg19 Xp22.33-11.21(chrX:168546-55240087)x1 copy number loss See cases [RCV000512136] ChrX:168546..55240087 [GRCh37]
ChrX:Xp22.33-11.21
pathogenic
GRCh37/hg19 Xp21.1-11.4(chrX:37584811-38467647)x2 copy number gain See cases [RCV000510479] ChrX:37584811..38467647 [GRCh37]
ChrX:Xp21.1-11.4
uncertain significance
GRCh37/hg19 Xp22.33-q28(chrX:168547-151304063)x1 copy number loss See cases [RCV000510382] ChrX:168547..151304063 [GRCh37]
ChrX:Xp22.33-q28
pathogenic
GRCh37/hg19 Xp22.33-q23(chrX:168547-112474026)x1 copy number loss See cases [RCV000510419] ChrX:168547..112474026 [GRCh37]
ChrX:Xp22.33-q23
pathogenic
GRCh37/hg19 Xp22.33-11.1(chrX:168546-58527164)x1 copy number loss See cases [RCV000510437] ChrX:168546..58527164 [GRCh37]
ChrX:Xp22.33-11.1
pathogenic
GRCh37/hg19 Xp22.33-11.21(chrX:168546-57504183)x1 copy number loss See cases [RCV000511615] ChrX:168546..57504183 [GRCh37]
ChrX:Xp22.33-11.21
pathogenic
GRCh37/hg19 Xp22.33-11.21(chrX:168546-57683964)x1 copy number loss See cases [RCV000512022] ChrX:168546..57683964 [GRCh37]
ChrX:Xp22.33-11.21
pathogenic
GRCh37/hg19 Xp21.2-q28(chrX:31088082-155233731)x1 copy number loss See cases [RCV000511413] ChrX:31088082..155233731 [GRCh37]
ChrX:Xp21.2-q28
pathogenic|uncertain significance
GRCh37/hg19 Xp21.1-q22.1(chrX:37521774-98488534)x1 copy number loss See cases [RCV000512026] ChrX:37521774..98488534 [GRCh37]
ChrX:Xp21.1-q22.1
pathogenic
GRCh37/hg19 Xp22.33-q28(chrX:168547-155233731) copy number gain See cases [RCV000512020] ChrX:168547..155233731 [GRCh37]
ChrX:Xp22.33-q28
pathogenic
GRCh37/hg19 Xp22.33-11.21(chrX:168546-54996659)x1 copy number loss See cases [RCV000510822] ChrX:168546..54996659 [GRCh37]
ChrX:Xp22.33-11.21
pathogenic
Single allele duplication Syndromic X-linked intellectual disability Lubs type [RCV000768455] ChrX:15323210..153542100 [GRCh37]
ChrX:Xp22.2-q28
pathogenic
GRCh37/hg19 Xp22.33-q13.3(chrX:168546-74549686) copy number loss See cases [RCV000512142] ChrX:168546..74549686 [GRCh37]
ChrX:Xp22.33-q13.3
pathogenic
GRCh37/hg19 Xp22.33-11.21(chrX:168564-57413442)x1 copy number loss See cases [RCV000512339] ChrX:168564..57413442 [GRCh37]
ChrX:Xp22.33-11.21
pathogenic
NM_021083.4(XK):c.1015A>T (p.Lys339Ter) single nucleotide variant Inborn genetic diseases [RCV000622910] ChrX:37728142 [GRCh38]
ChrX:37587395 [GRCh37]
ChrX:Xp21.1
pathogenic|likely pathogenic
GRCh37/hg19 Xp22.31-q21.31(chrX:7841947-90815333)x1,2 copy number gain not provided [RCV000684261] ChrX:7841947..90815333 [GRCh37]
ChrX:Xp22.31-q21.31
pathogenic
GRCh37/hg19 Xp22.33-11.3(chrX:168546-43248706)x1 copy number loss not provided [RCV000684184] ChrX:168546..43248706 [GRCh37]
ChrX:Xp22.33-11.3
pathogenic
GRCh37/hg19 Xp22.33-11.23(chrX:168546-46908284)x1 copy number loss not provided [RCV000684185] ChrX:168546..46908284 [GRCh37]
ChrX:Xp22.33-11.23
pathogenic
GRCh37/hg19 Xp22.33-11.22(chrX:60814-51821765)x1 copy number loss not provided [RCV000753274] ChrX:60814..51821765 [GRCh37]
ChrX:Xp22.33-11.22
pathogenic
GRCh37/hg19 Xp22.33-q28(chrX:60814-155254881)x2 copy number gain not provided [RCV000753277] ChrX:60814..155254881 [GRCh37]
ChrX:Xp22.33-q28
pathogenic
GRCh37/hg19 Xp22.33-q28(chrX:60262-155245765)x1 copy number loss not provided [RCV000753271] ChrX:60262..155245765 [GRCh37]
ChrX:Xp22.33-q28
pathogenic
GRCh37/hg19 Xp22.33-q28(chrX:60262-155245765)x3 copy number gain not provided [RCV000753272] ChrX:60262..155245765 [GRCh37]
ChrX:Xp22.33-q28
pathogenic
GRCh37/hg19 Xp22.33-q28(chrX:181779-155171702)x1 copy number loss not provided [RCV000753278] ChrX:181779..155171702 [GRCh37]
ChrX:Xp22.33-q28
pathogenic
Single allele duplication Autism [RCV000754365] ChrX:1..156040895 [GRCh38]
ChrX:Xp22.33-q28
pathogenic
GRCh37/hg19 Xp22.33-q28(chrX:60814-155236712)x2 copy number gain not provided [RCV000753276] ChrX:60814..155236712 [GRCh37]
ChrX:Xp22.33-q28
pathogenic
NC_000023.10:g.36649710_136649711del100000002insG indel Heterotaxy, visceral, 1, X-linked [RCV000754886] ChrX:36649710..136649711 [GRCh37]
ChrX:Xp21.1-q26.3
pathogenic
NC_000023.11:g.37685675C>T single nucleotide variant not provided [RCV001679947] ChrX:37685675 [GRCh38]
ChrX:37544928 [GRCh37]
ChrX:Xp21.1
benign
46,Y,inv(X)(p21.1q13.3) inversion Elevated circulating creatine kinase concentration [RCV000856573] ChrX:32196272..75245806 [GRCh37]
ChrX:Xp21.1-q13.3
likely pathogenic
GRCh37/hg19 Xp22.33-11.22(chrX:60814-50519984)x1 copy number loss See cases [RCV000790583] ChrX:60814..50519984 [GRCh37]
ChrX:Xp22.33-11.22
pathogenic
GRCh37/hg19 Xp21.1-11.3(chrX:32849282-43713387)x1 copy number loss not provided [RCV001007291] ChrX:32849282..43713387 [GRCh37]
ChrX:Xp21.1-11.3
pathogenic
NM_021083.4(XK):c.765C>T (p.Leu255=) single nucleotide variant not provided [RCV000927427] ChrX:37727892 [GRCh38]
ChrX:37587145 [GRCh37]
ChrX:Xp21.1
likely benign
NM_021083.4(XK):c.450C>G (p.Pro150=) single nucleotide variant not provided [RCV000923625] ChrX:37694490 [GRCh38]
ChrX:37553743 [GRCh37]
ChrX:Xp21.1
likely benign
NM_021083.4(XK):c.1108T>G (p.Tyr370Asp) single nucleotide variant not provided [RCV000861539] ChrX:37728235 [GRCh38]
ChrX:37587488 [GRCh37]
ChrX:Xp21.1
benign
NM_021083.4(XK):c.492C>T (p.Asp164=) single nucleotide variant not provided [RCV000918238] ChrX:37694532 [GRCh38]
ChrX:37553785 [GRCh37]
ChrX:Xp21.1
benign
NM_021083.4(XK):c.417G>T (p.Ala139=) single nucleotide variant not provided [RCV000921105] ChrX:37694457 [GRCh38]
ChrX:37553710 [GRCh37]
ChrX:Xp21.1
likely benign
NM_021083.4(XK):c.617T>C (p.Leu206Pro) single nucleotide variant not provided [RCV000982740] ChrX:37727744 [GRCh38]
ChrX:37586997 [GRCh37]
ChrX:Xp21.1
benign
NM_021083.4(XK):c.150C>T (p.Leu50=) single nucleotide variant not provided [RCV000860843] ChrX:37686111 [GRCh38]
ChrX:37545364 [GRCh37]
ChrX:Xp21.1
benign
GRCh37/hg19 Xp21.1(chrX:37448237-37568108)x3 copy number gain not provided [RCV000849168] ChrX:37448237..37568108 [GRCh37]
ChrX:Xp21.1
uncertain significance
GRCh37/hg19 Xp22.33-q28(chrX:168546-155233731)x4 copy number gain not provided [RCV000846039] ChrX:168546..155233731 [GRCh37]
ChrX:Xp22.33-q28
pathogenic
GRCh37/hg19 Xp22.33-11.4(chrX:168546-38054739)x1 copy number loss not provided [RCV000845671] ChrX:168546..38054739 [GRCh37]
ChrX:Xp22.33-11.4
pathogenic
GRCh37/hg19 Xp22.33-11.21(chrX:539722-55509385)x1 copy number loss not provided [RCV001007224] ChrX:539722..55509385 [GRCh37]
ChrX:Xp22.33-11.21
pathogenic
Single allele deletion Neurodevelopmental disorder [RCV000787440] ChrX:1..47140860 [GRCh37]
ChrX:Xp22.33-11.23
pathogenic
GRCh37/hg19 Xp21.1(chrX:37448237-37563710)x2 copy number gain not provided [RCV000846285] ChrX:37448237..37563710 [GRCh37]
ChrX:Xp21.1
uncertain significance
NM_021083.4(XK):c.412C>T (p.Arg138Trp) single nucleotide variant Inborn genetic diseases [RCV004963296]|not provided [RCV001245691] ChrX:37694452 [GRCh38]
ChrX:37553705 [GRCh37]
ChrX:Xp21.1
uncertain significance
GRCh37/hg19 Xp22.33-q11.1(chrX:168546-61877279)x1 copy number loss not provided [RCV000846273] ChrX:168546..61877279 [GRCh37]
ChrX:Xp22.33-q11.1
pathogenic
GRCh37/hg19 Xp22.33-q28(chrX:168546-155233731)x1 copy number loss not provided [RCV000848828] ChrX:168546..155233731 [GRCh37]
ChrX:Xp22.33-q28
pathogenic
NM_021083.4(XK):c.856_860del (p.Leu286fs) deletion not provided [RCV003239273] ChrX:37727981..37727985 [GRCh38]
ChrX:37587234..37587238 [GRCh37]
ChrX:Xp21.1
pathogenic
NM_021083.4(XK):c.771G>A (p.Trp257Ter) single nucleotide variant Elevated circulating creatine kinase concentration [RCV003127219] ChrX:37727898 [GRCh38]
ChrX:37587151 [GRCh37]
ChrX:Xp21.1
likely pathogenic
NM_021083.4(XK):c.1221G>A (p.Pro407=) single nucleotide variant not provided [RCV000861202] ChrX:37728348 [GRCh38]
ChrX:37587601 [GRCh37]
ChrX:Xp21.1
benign|likely benign
NM_021083.4(XK):c.508+5G>A single nucleotide variant McLeod neuroacanthocytosis syndrome [RCV001731241] ChrX:37694553 [GRCh38]
ChrX:37553806 [GRCh37]
ChrX:Xp21.1
pathogenic|not provided
GRCh37/hg19 Xp21.1-11.4(chrX:37472901-38023139)x2 copy number gain not provided [RCV002473495] ChrX:37472901..38023139 [GRCh37]
ChrX:Xp21.1-11.4
uncertain significance
Single allele deletion Retinitis pigmentosa 3 [RCV001251576] ChrX:35820200..38547007 [GRCh37]
ChrX:Xp21.1-11.4
pathogenic
GRCh37/hg19 Xp22.33-q28(chrX:60000-155234966)x1 copy number loss not provided [RCV001537933] ChrX:60000..155234966 [GRCh37]
ChrX:Xp22.33-q28
pathogenic
NM_021083.4(XK):c.*89A>T single nucleotide variant not provided [RCV001691862] ChrX:37728551 [GRCh38]
ChrX:37587804 [GRCh37]
ChrX:Xp21.1
benign
GRCh37/hg19 Xp21.1-11.4(chrX:37472900-37879310)x2 copy number gain not provided [RCV001007295] ChrX:37472900..37879310 [GRCh37]
ChrX:Xp21.1-11.4
uncertain significance
NC_000023.10:g.(?_30326313)_(41000684_?)del deletion Ornithine carbamoyltransferase deficiency [RCV001033914] ChrX:30326313..41000684 [GRCh37]
ChrX:Xp21.2-11.4
pathogenic
GRCh37/hg19 Xp21.1-11.4(chrX:37550041-37645092) copy number loss Granulomatous disease, chronic, X-linked [RCV002280606] ChrX:37550041..37645092 [GRCh37]
ChrX:Xp21.1-11.4
pathogenic
GRCh37/hg19 Xp21.1-11.4(chrX:37487291-38568933)x3 copy number gain not provided [RCV001258967] ChrX:37487291..38568933 [GRCh37]
ChrX:Xp21.1-11.4
uncertain significance
GRCh37/hg19 Xp21.1(chrX:37221175-37549799)x3 copy number gain not provided [RCV001258966] ChrX:37221175..37549799 [GRCh37]
ChrX:Xp21.1
uncertain significance
GRCh37/hg19 Xp22.33-11.21(chrX:219609-55466476)x1 copy number loss See cases [RCV001263061] ChrX:219609..55466476 [GRCh37]
ChrX:Xp22.33-11.21
pathogenic
Single allele complex Turner syndrome [RCV002280670] ChrX:590376..56315041 [GRCh37]
ChrX:Xp22.33-11.21
pathogenic
GRCh37/hg19 Xp22.33-q28(chrX:1-155270560) copy number loss Turner syndrome [RCV002280668] ChrX:1..155270560 [GRCh37]
ChrX:Xp22.33-q28
pathogenic
GRCh37/hg19 Xp22.33-11.21(chrX:168546-56457794)x1 copy number loss not provided [RCV001281358] ChrX:168546..56457794 [GRCh37]
ChrX:Xp22.33-11.21
pathogenic
NC_000023.10:g.(?_37545209)_(38186626_?)dup duplication Primary ciliary dyskinesia [RCV001364735] ChrX:37545209..38186626 [GRCh37]
ChrX:Xp21.1-11.4
uncertain significance
NM_021083.4(XK):c.554T>C (p.Leu185Ser) single nucleotide variant McLeod neuroacanthocytosis syndrome [RCV002499746]|not provided [RCV001366839] ChrX:37727681 [GRCh38]
ChrX:37586934 [GRCh37]
ChrX:Xp21.1
uncertain significance
NC_000023.10:g.(?_37545215)_(38280335_?)del deletion Ornithine carbamoyltransferase deficiency [RCV001390917]|Primary ciliary dyskinesia [RCV004579576] ChrX:37545215..38280335 [GRCh37]
ChrX:Xp21.1-11.4
pathogenic
NM_021083.4(XK):c.979G>A (p.Glu327Lys) single nucleotide variant McLeod neuroacanthocytosis syndrome [RCV001731243] ChrX:37728106 [GRCh38]
ChrX:37587359 [GRCh37]
ChrX:Xp21.1
pathogenic|not provided
NM_021083.4(XK):c.664C>T (p.Arg222Ter) single nucleotide variant McLeod neuroacanthocytosis syndrome [RCV001730037]|not provided [RCV003326586] ChrX:37727791 [GRCh38]
ChrX:37587044 [GRCh37]
ChrX:Xp21.1
pathogenic|likely pathogenic
NM_021083.4(XK):c.664C>G (p.Arg222Gly) single nucleotide variant McLeod neuroacanthocytosis syndrome [RCV001731242]|not provided [RCV002539802] ChrX:37727791 [GRCh38]
ChrX:37587044 [GRCh37]
ChrX:Xp21.1
pathogenic|uncertain significance|not provided
NM_021083.4(XK):c.343T>C (p.Ser115Pro) single nucleotide variant not provided [RCV001764765] ChrX:37694383 [GRCh38]
ChrX:37553636 [GRCh37]
ChrX:Xp21.1
uncertain significance
GRCh37/hg19 Xp22.33-q28(chrX:1-155270560) copy number gain 46,XX sex reversal 1 [RCV002280665]|Hypotonia [RCV002280667]|Trisomy X syndrome [RCV002280666] ChrX:1..155270560 [GRCh37]
ChrX:Xp22.33-q28
pathogenic
GRCh37/hg19 Xp22.33-11.22(chrX:168546-52573789) copy number loss Turner syndrome [RCV002280669] ChrX:168546..52573789 [GRCh37]
ChrX:Xp22.33-11.22
pathogenic
GRCh37/hg19 Xp22.33-q28(chrX:168546-155233731)x3 copy number gain not provided [RCV001829212] ChrX:168546..155233731 [GRCh37]
ChrX:Xp22.33-q28
pathogenic
GRCh37/hg19 Xp22.33-q28(chrX:168546-155233731)x1 copy number loss not provided [RCV001834509] ChrX:168546..155233731 [GRCh37]
ChrX:Xp22.33-q28
pathogenic
GRCh37/hg19 Xp21.1-11.4(chrX:37434962-37882707)x3 copy number gain not provided [RCV001827967] ChrX:37434962..37882707 [GRCh37]
ChrX:Xp21.1-11.4
uncertain significance
GRCh37/hg19 Xp21.1(chrX:37526649-37554684)x3 copy number gain not provided [RCV001825261] ChrX:37526649..37554684 [GRCh37]
ChrX:Xp21.1
not provided
NM_021083.4(XK):c.731A>G (p.Asn244Ser) single nucleotide variant not provided [RCV001905175] ChrX:37727858 [GRCh38]
ChrX:37587111 [GRCh37]
ChrX:Xp21.1
uncertain significance
NM_021083.4(XK):c.57G>C (p.Thr19=) single nucleotide variant not provided [RCV002207926] ChrX:37686018 [GRCh38]
ChrX:37545271 [GRCh37]
ChrX:Xp21.1
benign
NC_000023.10:g.(?_37545215)_(37670170_?)del deletion Granulomatous disease, chronic, X-linked [RCV003111162] ChrX:37545215..37670170 [GRCh37]
ChrX:Xp21.1-11.4
pathogenic
NC_000023.10:g.(?_37545215)_(37664441_?)del deletion Granulomatous disease, chronic, X-linked [RCV003111163] ChrX:37545215..37664441 [GRCh37]
ChrX:Xp21.1-11.4
pathogenic
GRCh37/hg19 Xp22.33-q28(chrX:200855-155240074) copy number gain Klinefelter syndrome [RCV003236730] ChrX:200855..155240074 [GRCh37]
ChrX:Xp22.33-q28
pathogenic
GRCh37/hg19 Xp22.33-11.21(chrX:168546-57841304) copy number loss Turner syndrome [RCV002280671] ChrX:168546..57841304 [GRCh37]
ChrX:Xp22.33-11.21
pathogenic
GRCh37/hg19 Xp22.2-q28(chrX:11522765-155233731)x1 copy number loss See cases [RCV002286357] ChrX:11522765..155233731 [GRCh37]
ChrX:Xp22.2-q28
pathogenic
GRCh37/hg19 Xp22.33-q28(chrX:61545-155226048)x2 copy number gain Klinefelter syndrome [RCV002282732] ChrX:61545..155226048 [GRCh37]
ChrX:Xp22.33-q28
pathogenic
NM_021083.4(XK):c.176A>G (p.His59Arg) single nucleotide variant not provided [RCV002299353] ChrX:37686137 [GRCh38]
ChrX:37545390 [GRCh37]
ChrX:Xp21.1
uncertain significance
NM_021083.4(XK):c.800T>C (p.Ile267Thr) single nucleotide variant Inborn genetic diseases [RCV002858888] ChrX:37727927 [GRCh38]
ChrX:37587180 [GRCh37]
ChrX:Xp21.1
uncertain significance
NM_021083.4(XK):c.204C>T (p.Leu68=) single nucleotide variant not provided [RCV002991688] ChrX:37686165 [GRCh38]
ChrX:37545418 [GRCh37]
ChrX:Xp21.1
likely benign
NM_021083.4(XK):c.657T>C (p.Ile219=) single nucleotide variant not provided [RCV003015130] ChrX:37727784 [GRCh38]
ChrX:37587037 [GRCh37]
ChrX:Xp21.1
likely benign
NM_021083.4(XK):c.353T>C (p.Ile118Thr) single nucleotide variant Inborn genetic diseases [RCV002818088] ChrX:37694393 [GRCh38]
ChrX:37553646 [GRCh37]
ChrX:Xp21.1
uncertain significance
NM_021083.4(XK):c.228A>G (p.Gln76=) single nucleotide variant not provided [RCV002591631] ChrX:37686189 [GRCh38]
ChrX:37545442 [GRCh37]
ChrX:Xp21.1
likely benign
NM_021083.4(XK):c.171C>G (p.Phe57Leu) single nucleotide variant not provided [RCV003018885] ChrX:37686132 [GRCh38]
ChrX:37545385 [GRCh37]
ChrX:Xp21.1
uncertain significance
NM_021083.4(XK):c.1332T>C (p.Ala444=) single nucleotide variant not provided [RCV002885879] ChrX:37728459 [GRCh38]
ChrX:37587712 [GRCh37]
ChrX:Xp21.1
benign
NM_021083.4(XK):c.1215T>C (p.Cys405=) single nucleotide variant not provided [RCV003022780] ChrX:37728342 [GRCh38]
ChrX:37587595 [GRCh37]
ChrX:Xp21.1
likely benign
NM_021083.4(XK):c.108G>T (p.Trp36Cys) single nucleotide variant not provided [RCV003006170]|not specified [RCV004526217] ChrX:37686069 [GRCh38]
ChrX:37545322 [GRCh37]
ChrX:Xp21.1
uncertain significance
NM_021083.4(XK):c.732C>T (p.Asn244=) single nucleotide variant not provided [RCV002626929] ChrX:37727859 [GRCh38]
ChrX:37587112 [GRCh37]
ChrX:Xp21.1
likely benign
NM_021083.4(XK):c.1099C>T (p.Leu367Phe) single nucleotide variant Inborn genetic diseases [RCV002669091] ChrX:37728226 [GRCh38]
ChrX:37587479 [GRCh37]
ChrX:Xp21.1
uncertain significance
NM_021083.4(XK):c.723A>G (p.Ile241Met) single nucleotide variant not provided [RCV003030529] ChrX:37727850 [GRCh38]
ChrX:37587103 [GRCh37]
ChrX:Xp21.1
uncertain significance
NM_021083.4(XK):c.205G>T (p.Val69Leu) single nucleotide variant not provided [RCV002715034] ChrX:37686166 [GRCh38]
ChrX:37545419 [GRCh37]
ChrX:Xp21.1
uncertain significance
NM_021083.4(XK):c.1243T>G (p.Ser415Ala) single nucleotide variant Inborn genetic diseases [RCV002588623]|not provided [RCV002588622] ChrX:37728370 [GRCh38]
ChrX:37587623 [GRCh37]
ChrX:Xp21.1
uncertain significance
NM_021083.4(XK):c.417G>A (p.Ala139=) single nucleotide variant not provided [RCV002653511] ChrX:37694457 [GRCh38]
ChrX:37553710 [GRCh37]
ChrX:Xp21.1
benign
NM_021083.4(XK):c.71T>A (p.Leu24Gln) single nucleotide variant not provided [RCV003073077] ChrX:37686032 [GRCh38]
ChrX:37545285 [GRCh37]
ChrX:Xp21.1
uncertain significance
NM_021083.4(XK):c.1019C>A (p.Thr340Asn) single nucleotide variant not provided [RCV003050835] ChrX:37728146 [GRCh38]
ChrX:37587399 [GRCh37]
ChrX:Xp21.1
likely benign
NM_021083.4(XK):c.100C>G (p.Arg34Gly) single nucleotide variant McLeod neuroacanthocytosis syndrome [RCV003139370] ChrX:37686061 [GRCh38]
ChrX:37545314 [GRCh37]
ChrX:Xp21.1
uncertain significance
NM_021083.4(XK):c.85C>G (p.Arg29Gly) single nucleotide variant McLeod neuroacanthocytosis syndrome [RCV003139371] ChrX:37686046 [GRCh38]
ChrX:37545299 [GRCh37]
ChrX:Xp21.1
uncertain significance
NM_021083.4(XK):c.200C>T (p.Pro67Leu) single nucleotide variant McLeod neuroacanthocytosis syndrome [RCV003139372] ChrX:37686161 [GRCh38]
ChrX:37545414 [GRCh37]
ChrX:Xp21.1
uncertain significance
NM_021083.4(XK):c.335A>G (p.Asn112Ser) single nucleotide variant McLeod neuroacanthocytosis syndrome [RCV003139373] ChrX:37694375 [GRCh38]
ChrX:37553628 [GRCh37]
ChrX:Xp21.1
uncertain significance
NM_021083.4(XK):c.794A>G (p.Glu265Gly) single nucleotide variant Inborn genetic diseases [RCV004676183]|McLeod neuroacanthocytosis syndrome [RCV003139374] ChrX:37727921 [GRCh38]
ChrX:37587174 [GRCh37]
ChrX:Xp21.1
uncertain significance
NM_021083.4(XK):c.404C>T (p.Ala135Val) single nucleotide variant McLeod neuroacanthocytosis syndrome [RCV003139375] ChrX:37694444 [GRCh38]
ChrX:37553697 [GRCh37]
ChrX:Xp21.1
uncertain significance
NM_021083.4(XK):c.1220C>T (p.Pro407Leu) single nucleotide variant McLeod neuroacanthocytosis syndrome [RCV003139376] ChrX:37728347 [GRCh38]
ChrX:37587600 [GRCh37]
ChrX:Xp21.1
uncertain significance
NM_021083.4(XK):c.297T>A (p.Pro99=) single nucleotide variant not provided [RCV003873113] ChrX:37694337 [GRCh38]
ChrX:37553590 [GRCh37]
ChrX:Xp21.1
likely benign
GRCh37/hg19 Xp22.33-11.22(chrX:2696762-53113314)x1 copy number loss not provided [RCV003483407] ChrX:2696762..53113314 [GRCh37]
ChrX:Xp22.33-11.22
pathogenic
GRCh37/hg19 Xp22.11-11.3(chrX:24633854-44236178)x1 copy number loss not provided [RCV003483418] ChrX:24633854..44236178 [GRCh37]
ChrX:Xp22.11-11.3
pathogenic
GRCh37/hg19 Xp21.1-11.22(chrX:36355238-54106257)x1 copy number loss not provided [RCV003483920] ChrX:36355238..54106257 [GRCh37]
ChrX:Xp21.1-11.22
pathogenic
NM_021083.4(XK):c.1007A>G (p.Tyr336Cys) single nucleotide variant not provided [RCV003438060] ChrX:37728134 [GRCh38]
ChrX:37587387 [GRCh37]
ChrX:Xp21.1
uncertain significance
NM_021083.4(XK):c.420G>A (p.Ser140=) single nucleotide variant not provided [RCV003739107] ChrX:37694460 [GRCh38]
ChrX:37553713 [GRCh37]
ChrX:Xp21.1
benign
NM_021083.4(XK):c.246-8G>C single nucleotide variant not provided [RCV003832374] ChrX:37694278 [GRCh38]
ChrX:37553531 [GRCh37]
ChrX:Xp21.1
likely benign
NM_021083.4(XK):c.613C>T (p.Pro205Ser) single nucleotide variant not provided [RCV003667038] ChrX:37727740 [GRCh38]
ChrX:37586993 [GRCh37]
ChrX:Xp21.1
uncertain significance
NM_021083.4(XK):c.1190G>A (p.Trp397Ter) single nucleotide variant not provided [RCV003701046] ChrX:37728317 [GRCh38]
ChrX:37587570 [GRCh37]
ChrX:Xp21.1
uncertain significance
NM_021083.4(XK):c.405G>A (p.Ala135=) single nucleotide variant not provided [RCV003725410] ChrX:37694445 [GRCh38]
ChrX:37553698 [GRCh37]
ChrX:Xp21.1
likely benign
NM_021083.4(XK):c.765C>G (p.Leu255=) single nucleotide variant not provided [RCV003725418] ChrX:37727892 [GRCh38]
ChrX:37587145 [GRCh37]
ChrX:Xp21.1
benign
NM_021083.4(XK):c.243C>G (p.Phe81Leu) single nucleotide variant not provided [RCV003541999] ChrX:37686204 [GRCh38]
ChrX:37545457 [GRCh37]
ChrX:Xp21.1
uncertain significance
NM_021083.4(XK):c.705C>A (p.Thr235=) single nucleotide variant not provided [RCV003848179] ChrX:37727832 [GRCh38]
ChrX:37587085 [GRCh37]
ChrX:Xp21.1
likely benign
GRCh37/hg19 Xp22.33-11.21(chrX:168546-55653170) copy number loss not specified [RCV003986200] ChrX:168546..55653170 [GRCh37]
ChrX:Xp22.33-11.21
pathogenic
GRCh37/hg19 Xp21.1-11.4(chrX:33027159-39840641) copy number loss not specified [RCV003986212] ChrX:33027159..39840641 [GRCh37]
ChrX:Xp21.1-11.4
pathogenic
GRCh37/hg19 Xp22.33-11.1(chrX:168546-58364114) copy number loss not specified [RCV003986240] ChrX:168546..58364114 [GRCh37]
ChrX:Xp22.33-11.1
pathogenic
NM_021083.4(XK):c.1308G>A (p.Leu436=) single nucleotide variant not provided [RCV003722773] ChrX:37728435 [GRCh38]
ChrX:37587688 [GRCh37]
ChrX:Xp21.1
benign
NM_021083.4(XK):c.303C>T (p.Val101=) single nucleotide variant not provided [RCV003841201] ChrX:37694343 [GRCh38]
ChrX:37553596 [GRCh37]
ChrX:Xp21.1
likely benign
NM_021083.4(XK):c.105G>A (p.Met35Ile) single nucleotide variant Inborn genetic diseases [RCV004485502] ChrX:37686066 [GRCh38]
ChrX:37545319 [GRCh37]
ChrX:Xp21.1
uncertain significance
NM_021083.4(XK):c.274C>T (p.Gln92Ter) single nucleotide variant XK-related disorder [RCV003901938] ChrX:37694314 [GRCh38]
ChrX:37553567 [GRCh37]
ChrX:Xp21.1
likely pathogenic
NM_021083.4(XK):c.177C>G (p.His59Gln) single nucleotide variant Inborn genetic diseases [RCV004485503] ChrX:37686138 [GRCh38]
ChrX:37545391 [GRCh37]
ChrX:Xp21.1
uncertain significance
Single allele deletion McLeod neuroacanthocytosis syndrome [RCV004547438] ChrX:31884229..37871972 [GRCh38]
ChrX:Xp21.1-11.4
pathogenic
GRCh38/hg38 Xp22.33-q28(chrX:2757837-156030895)x2 copy number gain Klinefelter syndrome [RCV004579655] ChrX:2757837..156030895 [GRCh38]
ChrX:Xp22.33-q28
pathogenic
NM_021083.4(XK):c.671T>C (p.Val224Ala) single nucleotide variant Inborn genetic diseases [RCV004688815] ChrX:37727798 [GRCh38]
ChrX:37587051 [GRCh37]
ChrX:Xp21.1
uncertain significance
NM_021083.4(XK):c.874A>T (p.Met292Leu) single nucleotide variant Inborn genetic diseases [RCV004688816] ChrX:37728001 [GRCh38]
ChrX:37587254 [GRCh37]
ChrX:Xp21.1
uncertain significance
NM_021083.4(XK):c.962A>G (p.Tyr321Cys) single nucleotide variant not provided [RCV004779677] ChrX:37728089 [GRCh38]
ChrX:37587342 [GRCh37]
ChrX:Xp21.1
uncertain significance
NM_021083.4(XK):c.662C>T (p.Thr221Ile) single nucleotide variant not provided [RCV004778893] ChrX:37727789 [GRCh38]
ChrX:37587042 [GRCh37]
ChrX:Xp21.1
uncertain significance
NM_021083.4(XK):c.210G>C (p.Leu70=) single nucleotide variant XK-related disorder [RCV004757783] ChrX:37686171 [GRCh38]
ChrX:37545424 [GRCh37]
ChrX:Xp21.1
likely benign
NM_021083.4(XK):c.397C>T (p.Arg133Ter) single nucleotide variant not provided [RCV004719432] ChrX:37694437 [GRCh38]
ChrX:37553690 [GRCh37]
ChrX:Xp21.1
pathogenic
NM_021083.4(XK):c.651T>G (p.Phe217Leu) single nucleotide variant Inborn genetic diseases [RCV004967550] ChrX:37727778 [GRCh38]
ChrX:37587031 [GRCh37]
ChrX:Xp21.1
uncertain significance
NM_021083.4(XK):c.1265C>T (p.Thr422Ile) single nucleotide variant Inborn genetic diseases [RCV004967551] ChrX:37728392 [GRCh38]
ChrX:37587645 [GRCh37]
ChrX:Xp21.1
uncertain significance
NM_021083.4(XK):c.1321C>T (p.Leu441Phe) single nucleotide variant Inborn genetic diseases [RCV004967552] ChrX:37728448 [GRCh38]
ChrX:37587701 [GRCh37]
ChrX:Xp21.1
uncertain significance
GRCh37/hg19 Xp22.2-11.23(chrX:15392463-48777470)x1 copy number loss not provided [RCV004819405] ChrX:15392463..48777470 [GRCh37]
ChrX:Xp22.2-11.23
pathogenic
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:1284
Count of miRNA genes:801
Interacting mature miRNAs:920
Transcripts:ENST00000378616
Prediction methods:Miranda
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Markers in Region
SHGC-82907  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37X37,562,296 - 37,562,578UniSTSGRCh37
Build 36X37,447,235 - 37,447,517RGDNCBI36
CeleraX41,699,974 - 41,700,256RGD
Cytogenetic MapXp21.1UniSTS
HuRefX35,307,257 - 35,307,539UniSTS
TNG Radiation Hybrid MapX9898.0UniSTS
GDB:373292  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37X37,553,368 - 37,553,992UniSTSGRCh37
Build 36X37,438,307 - 37,438,931RGDNCBI36
CeleraX41,691,046 - 41,691,670RGD
Cytogenetic MapXp21.1UniSTS
HuRefX35,298,677 - 35,299,301UniSTS
GDB:373297  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37X37,586,758 - 37,587,974UniSTSGRCh37
Build 36X37,471,697 - 37,472,913RGDNCBI36
CeleraX41,724,436 - 41,725,652RGD
Cytogenetic MapXp21.1UniSTS
HuRefX35,331,482 - 35,332,698UniSTS
DXS6997E  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37X37,591,240 - 37,591,312UniSTSGRCh37
Build 36X37,476,179 - 37,476,251RGDNCBI36
CeleraX41,728,918 - 41,728,990RGD
Cytogenetic MapXp21.1UniSTS
HuRefX35,335,964 - 35,336,036UniSTS
GeneMap99-GB4 RH MapX112.31UniSTS
XK__4911  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37X37,590,596 - 37,591,511UniSTSGRCh37
Build 36X37,475,535 - 37,476,450RGDNCBI36
CeleraX41,728,274 - 41,729,189RGD
HuRefX35,335,320 - 35,336,235UniSTS
GDB:373289  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37X37,545,203 - 37,545,633UniSTSGRCh37
CeleraX41,682,865 - 41,683,295UniSTS
Cytogenetic MapXp21.1UniSTS


Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
entire extraembryonic component
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
pharyngeal arch
renal system
reproductive system
respiratory system
sensory system
visual system
1198 2433 2788 2242 4937 1706 2315 4 608 1670 449 2240 6974 6189 46 3717 1 812 1733 1599 173 1

Sequence

Nucleotide Sequences
RefSeq Transcripts NG_007473 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_021083 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011543978 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054327716 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB214532 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC233292 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC233297 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL121577 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY534238 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY655133 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY655134 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY655135 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC036019 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471141 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068255 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DQ062746 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FB659844 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KM821167 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KY926705 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KY939773 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  LC543982 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  LT838807 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  LT838808 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  MH727540 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  MH727541 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  MH729875 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  MH730936 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  MK071977 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  MZ322308 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  OK086973 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  Z32684 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENST00000378616   ⟹   ENSP00000367879
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 EnsemblX37,685,791 - 37,732,130 (+)Ensembl
RefSeq Acc Id: NM_021083   ⟹   NP_066569
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38X37,685,791 - 37,732,130 (+)NCBI
GRCh37X37,545,133 - 37,591,383 (+)ENTREZGENE
Build 36X37,430,052 - 37,476,322 (+)NCBI Archive
HuRefX35,290,888 - 35,336,107 (+)ENTREZGENE
CHM1_1X37,576,264 - 37,622,522 (+)NCBI
T2T-CHM13v2.0X37,089,348 - 37,135,703 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011543978   ⟹   XP_011542280
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38X37,685,791 - 37,704,307 (+)NCBI
Sequence:
RefSeq Acc Id: XM_054327716   ⟹   XP_054183691
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0X37,089,348 - 37,107,880 (+)NCBI
RefSeq Acc Id: NP_066569   ⟸   NM_021083
- UniProtKB: Q8IUK6 (UniProtKB/Swiss-Prot),   Q4TTN6 (UniProtKB/Swiss-Prot),   Q9UC77 (UniProtKB/Swiss-Prot),   P51811 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_011542280   ⟸   XM_011543978
- Peptide Label: isoform X1
- Sequence:
Ensembl Acc Id: ENSP00000367879   ⟸   ENST00000378616
RefSeq Acc Id: XP_054183691   ⟸   XM_054327716
- Peptide Label: isoform X1

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P51811-F1-model_v2 AlphaFold P51811 1-444 view protein structure

Promoters
RGD ID:6809411
Promoter ID:HG_KWN:66410
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   HeLa_S3,   K562,   Lymphoblastoid,   NB4
Transcripts:OTTHUMT00000080875
Position:
Human AssemblyChrPosition (strand)Source
Build 36X37,429,626 - 37,430,142 (+)MPROMDB
RGD ID:13605020
Promoter ID:EPDNEW_H28694
Type:initiation region
Name:XK_1
Description:X-linked Kx blood group
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H28695  
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh38X37,685,791 - 37,685,851EPDNEW
RGD ID:13605022
Promoter ID:EPDNEW_H28695
Type:multiple initiation site
Name:XK_2
Description:X-linked Kx blood group
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H28694  
Experiment Methods:Single-end sequencing.; Paired-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh38X37,731,707 - 37,731,767EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:12811 AgrOrtholog
COSMIC XK COSMIC
Ensembl Genes ENSG00000047597 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENST00000378616 ENTREZGENE
  ENST00000378616.5 UniProtKB/Swiss-Prot
GTEx ENSG00000047597 GTEx
HGNC ID HGNC:12811 ENTREZGENE
Human Proteome Map XK Human Proteome Map
InterPro XK-rel UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  XK-related_adapter UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report hsa:7504 UniProtKB/Swiss-Prot
NCBI Gene 7504 ENTREZGENE
OMIM 314850 OMIM
PANTHER MEMBRANE TRANSPORT PROTEIN XK UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  MEMBRANE TRANSPORT PROTEIN XK FAMILY MEMBER UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam XK-related UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB PA37410 PharmGKB
UniProt A0A0A1E0F2_HUMAN UniProtKB/TrEMBL
  A0A221C5P1_HUMAN UniProtKB/TrEMBL
  A0A2R3WH08_HUMAN UniProtKB/TrEMBL
  A0A346FY29_HUMAN UniProtKB/TrEMBL
  A0A8D5B3W7_HUMAN UniProtKB/TrEMBL
  P51811 ENTREZGENE
  Q2Z218_HUMAN UniProtKB/TrEMBL
  Q4TTN6 ENTREZGENE
  Q8IUK6 ENTREZGENE
  Q9UC77 ENTREZGENE
  XK_HUMAN UniProtKB/Swiss-Prot
UniProt Secondary Q4TTN6 UniProtKB/Swiss-Prot
  Q8IUK6 UniProtKB/Swiss-Prot
  Q9UC77 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-07-18 XK  X-linked Kx blood group antigen, Kell and VPS13A binding protein  XK  X-linked Kx blood group  Symbol and/or name change 19259463 PROVISIONAL
2014-06-24 XK  X-linked Kx blood group  XK  X-linked Kx blood group (McLeod syndrome)  Symbol and/or name change 5135510 APPROVED