CCR5 (C-C motif chemokine receptor 5) - Rat Genome Database

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Gene: CCR5 (C-C motif chemokine receptor 5) Homo sapiens
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Symbol: CCR5
Name: C-C motif chemokine receptor 5
RGD ID: 1351344
HGNC Page HGNC:1606
Description: Enables several functions, including C-C chemokine receptor activity; chemokine (C-C motif) ligand 5 binding activity; and identical protein binding activity. Involved in several processes, including cellular response to lipopolysaccharide; intracellular signaling cassette; and release of sequestered calcium ion into cytosol by sarcoplasmic reticulum. Located in endosome and external side of plasma membrane. Is active in cell surface. Implicated in several diseases, including Kawasaki disease; West Nile fever; autoimmune disease (multiple); berylliosis; and sarcoidosis (multiple). Biomarker of several diseases, including autoimmune disease (multiple); dry eye syndrome (multiple); lung disease (multiple); pleural tuberculosis; and respiratory syncytial virus infectious disease.
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: C-C chemokine receptor type 5; C-C CKR-5; C-C motif chemokine receptor 5 (gene/pseudogene); C-C motif chemokine receptor 5 A159A; CC-CKR-5; CCCKR5; CCR-5; CD195; chemokine (C-C motif) receptor 5; chemokine (C-C motif) receptor 5 (gene/pseudogene); chemokine receptor CCR5; chemokine recptor CCR5 Delta32; chemr13; CKR-5; CKR5; CMKBR5; FLJ78003; HIV-1 fusion coreceptor; IDDM22; mutant C-C motif chemokine receptor
RGD Orthologs
Mouse
Rat
Bonobo
Dog
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
NCBI Annotation Information: Note: Genetic polymorphisms result in both protein coding and non-coding alleles of this gene.
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38346,370,142 - 46,376,206 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl346,370,946 - 46,376,206 (+)EnsemblGRCh38hg38GRCh38
GRCh37346,411,633 - 46,417,697 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36346,386,637 - 46,392,701 (+)NCBINCBI36Build 36hg18NCBI36
Celera346,348,960 - 46,355,024 (+)NCBICelera
Cytogenetic Map3p21.31NCBI
HuRef346,455,276 - 46,461,340 (+)NCBIHuRef
CHM1_1346,361,630 - 46,367,689 (+)NCBICHM1_1
T2T-CHM13v2.0346,385,976 - 46,392,040 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View
acquired immunodeficiency syndrome  (IAGP)
Acute Hepatitis  (ISO)
acute kidney failure  (EXP)
allergic contact dermatitis  (ISO)
Alzheimer's disease  (IEP,ISO)
anterior uveitis  (ISO)
Arterial Injury  (ISO)
arteriosclerosis  (ISO)
asthma  (IAGP,IEP,ISO)
atherosclerosis  (ISO)
atopic dermatitis  (EXP,IEP)
Behcet's disease  (IAGP,IEP)
berylliosis  (IAGP)
Birth Injuries  (ISO)
Brain Hypoxia-Ischemia  (ISO)
Brain Injuries  (ISO)
brain ischemia  (ISO)
breast cancer  (IAGP,IEP)
cerebral infarction  (ISO)
Chemical and Drug Induced Liver Injury  (ISO)
chlamydia  (ISO)
Chronic Hepatitis C  (IAGP)
chronic obstructive pulmonary disease  (IEP)
Colonic Neoplasms  (EXP)
Colorectal Neoplasms  (EXP)
corneal neovascularization  (ISO)
coronary artery disease  (ISO)
Coronary Disease  (IAGP)
Coronavirus infectious disease  (ISO,ISS)
cutaneous leishmaniasis  (IAGP)
Diabetic Nephropathies  (IAGP)
diabetic retinopathy  (ISO)
Disease Progression  (EXP)
dry eye syndrome  (IEP)
end stage renal disease  (ISO)
Experimental Arthritis  (ISO)
Experimental Autoimmune Encephalomyelitis  (ISO)
Experimental Diabetes Mellitus  (ISO)
Experimental Liver Cirrhosis  (ISO)
Experimental Mammary Neoplasms  (IMP)
Experimental Neoplasms  (EXP)
Experimental Seizures  (ISO)
fallopian tube disease  (IAGP)
Fever  (ISO)
Flaviviridae Infections  (IEP)
gallbladder cancer  (IAGP)
glaucoma  (IEP)
graft-versus-host disease  (ISO)
granulomatosis with polyangiitis  (IAGP)
hepatitis B  (IAGP)
hepatitis C  (EXP,IAGP)
Herpes Simplex Encephalitis  (ISO)
herpes simplex virus keratitis  (ISO)
human immunodeficiency virus infectious disease  (EXP,IAGP,IEP)
Human Influenza  (IAGP,ISO)
Hyperalgesia  (ISO)
hypertension  (IAGP,ISO)
Inflammation  (ISO)
interstitial lung disease  (IEP)
juvenile rheumatoid arthritis  (IAGP)
Kawasaki disease  (IAGP)
keratoconjunctivitis sicca  (IEP)
leishmaniasis  (IEP,ISO)
Liver Injury  (ISO)
Lymphatic Metastasis  (IEP)
metabolic dysfunction and alcohol associated liver disease  (ISO)
multiple sclerosis  (IAGP,IEP)
Mycoplasma Infections  (IAGP)
Mycoplasma pneumoniae pneumonia  (ISO)
Myocardial Reperfusion Injury  (IEP,ISO)
Neoplasm Metastasis  (EXP)
nephritis  (EXP)
optic neuritis  (IEP)
Oral Lichen Planus  (IEP)
orchitis  (ISO)
ovarian carcinoma  (IEP)
pancreatic cancer  (ISO)
paracoccidioidomycosis  (ISO)
Perennial Allergic Rhinitis  (IEP)
plague  (ISO)
pleural tuberculosis  (IEP)
pneumonia  (ISO)
posterior uveitis  (IAGP)
Progressive Microcephaly with Seizures and Cerebral and Cerebellar Atrophy  (IAGP)
psoriasis  (IEP)
pulmonary emphysema  (IEP,ISO)
pulmonary fibrosis  (IEP,ISO)
pulmonary sarcoidosis  (IAGP,IEP)
pulmonary tuberculosis  (IEP)
respiratory syncytial virus infectious disease  (IAGP,IEP)
Respirovirus Infections  (ISO)
rheumatoid arthritis  (IAGP)
sarcoidosis  (IAGP)
Sjogren's syndrome  (IAGP)
status epilepticus  (ISO)
syphilis  (IEP)
systemic lupus erythematosus  (IEP)
Transplant Rejection  (ISO)
type 1 diabetes mellitus  (IAGP,IEP,ISO)
type 1 diabetes mellitus 22  (EXP,IAGP)
type 2 diabetes mellitus  (IEP,ISO)
Ulcer  (IEP)
urticaria  (IAGP)
uveitis  (ISO)
visceral leishmaniasis  (ISO)
visual epilepsy  (ISO)
West Nile fever  (EXP,IAGP)

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(S)-nicotine  (EXP)
1,3-benzothiazole-2-thiol  (EXP)
1-chloro-2,4-dinitrobenzene  (EXP)
17alpha-ethynylestradiol  (EXP,ISO)
17beta-estradiol  (ISO)
17beta-estradiol 3-benzoate  (ISO)
2,2',4,4',5,5'-hexachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (ISO)
2,4,6-trinitrobenzenesulfonic acid  (ISO)
2,4-dibromophenyl 2,4,5-tribromophenyl ether  (ISO)
2-naphthylamine  (EXP)
3-chlorophenol  (EXP)
4,4'-sulfonyldiphenol  (EXP)
4-amino-2,6-dinitrotoluene  (ISO)
4-hydroxyphenyl retinamide  (ISO)
acetamide  (ISO)
aflatoxin B1  (EXP,ISO)
ammonium chloride  (ISO)
amphetamine  (ISO)
Ancriviroc  (EXP)
antirheumatic drug  (EXP)
arsane  (ISO)
arsenic atom  (ISO)
Azoxymethane  (ISO)
Bardoxolone methyl  (EXP)
benzalkonium chloride  (ISO)
benzene  (EXP)
benzo[a]pyrene  (EXP,ISO)
bis(2-chloroethyl) sulfide  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (ISO)
bisphenol F  (ISO)
bleomycin A2  (ISO)
buta-1,3-diene  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
cannabidiol  (ISO)
carbon nanotube  (ISO)
celecoxib  (ISO)
CGP 52608  (EXP)
chloroprene  (ISO)
Cirsimarin  (EXP)
cisplatin  (ISO)
clofibrate  (ISO)
cocaine  (EXP)
crocidolite asbestos  (ISO)
Cuprizon  (ISO)
cyclophosphamide  (ISO)
cyclosporin A  (ISO)
cyproterone acetate  (EXP)
D-penicillamine  (ISO)
dextran sulfate  (ISO)
Dibutyl phosphate  (EXP)
diclofenac  (ISO)
Didecyldimethylammonium  (ISO)
dioxygen  (ISO)
disulfiram  (ISO)
diuron  (EXP)
enniatin  (EXP)
ethyl methanesulfonate  (EXP)
eugenol  (EXP)
formaldehyde  (EXP)
graphene oxide  (ISO)
indole-3-methanol  (EXP)
isopentenyl diphosphate  (EXP)
ketamine  (ISO)
lipopolysaccharide  (EXP,ISO)
maraviroc  (EXP)
mechlorethamine  (ISO)
mercury dichloride  (ISO)
methamphetamine  (ISO)
methyl methanesulfonate  (EXP)
mevalonic acid  (EXP)
microcystin-LR  (ISO)
mycotoxin  (ISO)
nickel atom  (EXP)
nicotine  (EXP)
nitric oxide  (ISO)
oxaliplatin  (ISO)
paracetamol  (ISO)
pentachlorophenol  (EXP)
phenobarbital  (ISO)
pirinixic acid  (ISO)
proanthocyanidin  (EXP)
prostaglandin E2  (EXP)
protein kinase inhibitor  (EXP)
reactive oxygen species  (ISO)
resveratrol  (ISO)
SCH 23390  (ISO)
sevoflurane  (ISO)
silicon dioxide  (ISO)
simvastatin  (EXP,ISO)
sodium arsenite  (ISO)
sodium dodecyl sulfate  (EXP)
Soman  (ISO)
staurosporine  (ISO)
testosterone  (ISO)
tetrachloromethane  (ISO)
titanium dioxide  (ISO)
TMC-120A  (ISO)
topotecan  (ISO)
tremolite asbestos  (ISO)
trichostatin A  (EXP)
trimellitic anhydride  (ISO)
triphenyl phosphate  (EXP)
troglitazone  (ISO)
vinclozolin  (ISO)
wortmannin  (ISO)
zidovudine  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
apoptotic process  (IEA,ISO)
calcium ion transport  (IDA)
calcium-mediated signaling  (IBA,IDA)
cell chemotaxis  (IBA)
cell surface receptor signaling pathway  (TAS)
cell-cell signaling  (IDA)
cellular defense response  (TAS)
cellular response to lipopolysaccharide  (IEP)
cellular response to transforming growth factor beta stimulus  (ISO)
cellular response to tumor necrosis factor  (ISO)
chemokine-mediated signaling pathway  (IEA)
chemotaxis  (IEA,TAS)
defense response  (IEA,ISO)
defense response to bacterium  (ISO)
dendritic cell chemotaxis  (TAS)
fat cell differentiation  (ISO)
forebrain development  (ISO)
G protein-coupled receptor signaling pathway  (IEA,IMP,TAS)
immune response  (IBA,IEA,TAS)
inflammatory response  (IBA,IEA,TAS)
inflammatory response to antigenic stimulus  (ISO)
MAPK cascade  (IEP)
negative regulation of axon extension  (ISO)
negative regulation of macrophage apoptotic process  (IEA)
negative regulation of neural precursor cell proliferation  (ISO)
positive regulation of cell killing  (ISO)
positive regulation of cell-cell adhesion  (ISO)
positive regulation of cytosolic calcium ion concentration  (IBA,ISO,TAS)
positive regulation of fever generation  (ISO)
positive regulation of gene expression  (ISO)
positive regulation of interleukin-1 beta production  (ISO)
positive regulation of interleukin-6 production  (ISO)
positive regulation of neuron apoptotic process  (ISO)
positive regulation of neuron differentiation  (ISO)
positive regulation of tumor necrosis factor production  (ISO)
regulation of cell migration  (ISO)
release of sequestered calcium ion into cytosol by sarcoplasmic reticulum  (IDA)
response to cholesterol  (IMP)
response to ionizing radiation  (ISO)
response to lipopolysaccharide  (ISO)
signaling  (IEP)
symbiont entry into host cell  (IEA)

Cellular Component
cell surface  (IDA,IEA,ISO)
cytoplasm  (IBA,TAS)
endosome  (IDA,ISO)
external side of plasma membrane  (IBA,IDA,IEA)
membrane  (IEA)
plasma membrane  (IEA,TAS)

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View

Human Phenotype
References

References - curated
# Reference Title Reference Citation
1. CCR5 Polymorphism as a Protective Factor for Hepatocellular Carcinoma in Hepatitis B Virus-Infected Iranian Patients Abdolmohammadi R, etal., Asian Pac J Cancer Prev. 2016 Oct 1;17(10):4643-4646.
2. Polymorphisms of chemokine and chemokine receptor genes in idiopathic immune-mediated posterior segment uveitis. Ahad MA, etal., Mol Vis. 2007 Mar 23;13:388-96.
3. Effects of the CCR5-Delta32 mutation on antiviral treatment in chronic hepatitis C. Ahlenstiel G, etal., J Hepatol. 2003 Aug;39(2):245-52.
4. Association of genetic variations in CCR5 and its ligand, RANTES with clearance of hepatitis B virus in Korea. Ahn SH, etal., J Med Virol. 2006 Dec;78(12):1564-71. doi: 10.1002/jmv.20739.
5. Linkage and haplotype analysis for chemokine receptors clustered on chromosome 3p21.3 and transmitted in family pedigrees with asthma and atopy. Al-Abdulhadi SA and Al-Rabia MW, Ann Saudi Med. 2010 Mar-Apr;30(2):115-22.
6. Temporal course of changes in gene expression suggests a cytokine-related mechanism for long-term hippocampal alteration after controlled cortical impact. Almeida-Suhett CP, etal., J Neurotrauma. 2014 Apr 1;31(7):683-90. doi: 10.1089/neu.2013.3029. Epub 2014 Mar 3.
7. Sustained inhibition of corneal neovascularization by genetic ablation of CCR5. Ambati BK, etal., Invest Ophthalmol Vis Sci 2003 Feb;44(2):590-3.
8. Host inflammatory response and development of complications of Chlamydia trachomatis genital infection in CCR5-deficient mice and subfertile women with the CCR5delta32 gene deletion. Barr EL, etal., J Microbiol Immunol Infect. 2005 Aug;38(4):244-54.
9. CCR 4 and CCR 5 expression in conjunctival specimens as differential markers of T(H)1/ T(H)2 in ocular surface disorders. Baudouin C, etal., J Allergy Clin Immunol. 2005 Sep;116(3):614-9.
10. Delayed functional expression of neuronal chemokine receptors following focal nerve demyelination in the rat: a mechanism for the development of chronic sensitization of peripheral nociceptors. Bhangoo S, etal., Mol Pain. 2007 Dec 12;3:38.
11. Chronic insulin treatment of diabetes does not fully normalize alterations in the retinal transcriptome. Bixler GV, etal., BMC Med Genomics. 2011 May 15;4:40. doi: 10.1186/1755-8794-4-40.
12. Influence of insulin therapy on expression of chemokine receptor CCR5 and selected inflammatory markers in patients with type 2 diabetes mellitus. Bogdanski P, etal., Int J Clin Pharmacol Ther. 2007 Oct;45(10):563-7.
13. T cell polarization identifies distinct clinical phenotypes in scleroderma lung disease. Boin F, etal., Arthritis Rheum. 2008 Apr;58(4):1165-74.
14. Chemokine and chemokine receptor expression analysis in target organs of acute graft-versus-host disease. Bouazzaoui A, etal., Genes Immun. 2009 Dec;10(8):687-701. Epub 2009 Jul 2.
15. Cigarette smoke-induced pulmonary inflammation, but not airway remodelling, is attenuated in chemokine receptor 5-deficient mice. Bracke KR, etal., Clin Exp Allergy. 2007 Oct;37(10):1467-79.
16. Analysis of the CC chemokine receptor 5 delta32 polymorphism in a Brazilian population with cutaneous leishmaniasis. Brajao de Oliveira K, etal., J Cutan Pathol. 2007 Jan;34(1):27-32.
17. Ccr5 but not Ccr1 deficiency reduces development of diet-induced atherosclerosis in mice. Braunersreuther V, etal., Arterioscler Thromb Vasc Biol. 2007 Feb;27(2):373-9. Epub 2006 Nov 30.
18. Polymorphisms in chemokine receptor genes and susceptibility to Kawasaki disease. Breunis WB, etal., Clin Exp Immunol. 2007 Oct;150(1):83-90. Epub 2007 Aug 2.
19. Chemotactic mediators of Th1 T-cell trafficking in smokers and COPD patients. Brozyna S, etal., COPD. 2009 Feb;6(1):4-16.
20. Possible contribution of chemokine receptor CCR2 and CCR5 polymorphisms in the pathogenesis of chronic spontaneous autoreactive urticaria. Brzoza Z, etal., Allergol Immunopathol (Madr). 2013 May 30. pii: S0301-0546(13)00103-1. doi: 10.1016/j.aller.2013.02.003.
21. Genetic variations in the receptor-ligand pair CCR5 and CCL3L1 are important determinants of susceptibility to Kawasaki disease. Burns JC, etal., J Infect Dis. 2005 Jul 15;192(2):344-9. Epub 2005 Jun 8.
22. Increased macrophage inflammatory protein-1alpha and macrophage inflammatory protein-1beta levels in bronchoalveolar lavage fluid of patients affected by different stages of pulmonary sarcoidosis. Capelli A, etal., Am J Respir Crit Care Med. 2002 Jan 15;165(2):236-41.
23. CCR5 expression and CC chemokine levels in idiopathic pulmonary fibrosis. Capelli A, etal., Eur Respir J. 2005 Apr;25(4):701-7.
24. Abnormal immune response of CCR5-deficient mice to ocular infection with herpes simplex virus type 1. Carr DJ, etal., J Gen Virol. 2006 Mar;87(Pt 3):489-99.
25. Cellular immune responses to severe acute respiratory syndrome coronavirus (SARS-CoV) infection in senescent BALB/c mice: CD4+ T cells are important in control of SARS-CoV infection. Chen J, etal., J Virol. 2010 Feb;84(3):1289-301. Epub 2009 Nov 11.
26. CCR5 knockout mice with C57BL6 background are resistant to acetaminophen-mediated hepatotoxicity due to decreased macrophages migration into the liver. Choi DY, etal., Arch Toxicol. 2015 Feb;89(2):211-20. doi: 10.1007/s00204-014-1253-3. Epub 2014 Apr 27.
27. Anti-inflammatory effect of low intensity ultrasound (LIUS) on complete Freund's adjuvant-induced arthritis synovium. Chung JI, etal., Osteoarthritis Cartilage. 2012 Jan 24.
28. Microglial expression of chemokine receptor CCR5 during rat forebrain development and after perinatal hypoxia-ischemia. Cowell RM, etal., J Neuroimmunol. 2006 Apr;173(1-2):155-65. Epub 2006 Mar 3.
29. MCP-1, CCR2 and CCR5 polymorphisms in Tunisian patients with atopic asthma. Dhaouadi T, etal., Iran J Allergy Asthma Immunol. 2013 Mar;12(1):29-36. doi: 012.01/ijaai.2936.
30. Temporal expression and cellular origin of CC chemokine receptors CCR1, CCR2 and CCR5 in the central nervous system: insight into mechanisms of MOG-induced EAE. Eltayeb S, etal., J Neuroinflammation. 2007 May 7;4:14.
31. CXCR3-deficiency protects influenza-infected CCR5-deficient mice from mortality. Fadel SA, etal., Eur J Immunol. 2008 Dec;38(12):3376-87.
32. The chemokine receptor CCR5 deletion mutation is associated with MS in HLA-DR4-positive Russians. Favorova OO, etal., Neurology 2002 Nov 26;59(10):1652-5.
33. Female-specific association of C-C chemokine receptor 5 gene polymorphisms with Lofgren's syndrome. Fischer A, etal., J Mol Med. 2008 May;86(5):553-61. Epub 2008 Mar 1.
34. Reduced macrophage infiltration and demyelination in mice lacking the chemokine receptor CCR5 following infection with a neurotropic coronavirus. Glass WG, etal., Virology. 2001 Sep 15;288(1):8-17. doi: 10.1006/viro.2001.1050.
35. GOAs Human GO annotations GOA_HUMAN data from the GO Consortium
36. Controls for lung dendritic cell maturation and migration during respiratory viral infection. Grayson MH, etal., J Immunol. 2007 Aug 1;179(3):1438-48.
37. An immune basis for lung parenchymal destruction in chronic obstructive pulmonary disease and emphysema. Grumelli S, etal., PLoS Med. 2004 Oct;1(1):e8. Epub 2004 Oct 19.
38. Expression of cell adhesion molecules, chemokines and chemokine receptors involved in leukocyte traffic in rats undergoing autoimmune orchitis. Guazzone VA, etal., Reproduction. 2012 May;143(5):651-62. Epub 2012 Feb 20.
39. Chemokine receptor CCR5 expression in conjunctival epithelium of patients with dry eye syndrome. Gulati A, etal., Arch Ophthalmol. 2006 May;124(5):710-6.
40. Chemokine receptor expression in rat adjuvant-induced arthritis. Haas CS, etal., Arthritis Rheum. 2005 Dec;52(12):3718-30.
41. Short communication: Influence of active tuberculosis on chemokine and chemokine receptor expression in HIV-infected persons. Hanna LE, etal., AIDS Res Hum Retroviruses. 2005 Dec;21(12):997-1002.
42. Gene expression profiling of skin and draining lymph nodes of rats affected with cutaneous contact hypersensitivity. Hartmann B, etal., Inflamm Res. 2006 Aug;55(8):322-34.
43. Donor T-cell production of RANTES significantly contributes to the development of idiopathic pneumonia syndrome after allogeneic stem cell transplantation. Hildebrandt GC, etal., Blood. 2005 Mar 15;105(6):2249-57. Epub 2004 Nov 16.
44. Abnormal expression of chemokine receptors in Behcet's disease: relationship to intracellular Th1/Th2 cytokines and to clinical manifestations. Houman H, etal., J Autoimmun. 2004 Nov;23(3):267-73.
45. Increasing CCL5/CCR5 on CD4+ T cells in peripheral blood of oral lichen planus. Hu JY, etal., Cytokine. 2013 Apr;62(1):141-5. doi: 10.1016/j.cyto.2013.01.020. Epub 2013 Mar 9.
46. A CCL5 Haplotype Is Associated with Low Seropositivity Rate of HCV Infection in People Who Inject Drugs. Huik K, etal., PLoS One. 2016 Jun 15;11(6):e0156850. doi: 10.1371/journal.pone.0156850. eCollection 2016.
47. Variants of the chemokine receptor CCR5 are associated with severe bronchiolitis caused by respiratory syncytial virus. Hull J, etal., J Infect Dis. 2003 Sep 15;188(6):904-7. Epub 2003 Sep 9.
48. Increased expression of RANTES, CCR3 and CCR5 in the lesional skin of patients with atopic eczema. Kato Y, etal., Int Arch Allergy Immunol. 2006;139(3):245-57. Epub 2006 Jan 30.
49. Chemokine receptor 5 big up tri, open32 allele in patients with severe pandemic (H1N1) 2009. Keynan Y, etal., Emerg Infect Dis. 2010 Oct;16(10):1621-2.
50. The chemokine receptor CCR5 plays a key role in the early memory CD8+ T cell response to respiratory virus infections. Kohlmeier JE, etal., Immunity. 2008 Jul 18;29(1):101-13.
51. Pathogenesis of herpetic stromal keratitis in CCR5- and/or CXCR3-deficient mice. Komatsu K, etal., Curr Eye Res. 2008 Sep;33(9):736-49. doi: 10.1080/02713680802344716.
52. Decreased pain responses of C-C chemokine receptor 5 knockout mice to chemical or inflammatory stimuli. Lee YK, etal., Neuropharmacology. 2013 Apr;67:57-65. doi: 10.1016/j.neuropharm.2012.10.030. Epub 2012 Nov 9.
53. Effects of neferine on CCL5 and CCR5 expression in SCG of type 2 diabetic rats. Li G, etal., Brain Res Bull. 2013 Jan;90:79-87. doi: 10.1016/j.brainresbull.2012.10.002. Epub 2012 Oct 9.
54. mRNA expression of chemokine receptors on peripheral blood mononuclear cells and correlation with clinical features in systemic lupus erythematosus patients. Li YM, etal., Chin Med Sci J. 2010 Sep;25(3):162-8.
55. Lack of association between the chemokine receptor 5 polymorphism CCR5delta32 in rheumatoid arthritis and juvenile idiopathic arthritis. Lindner E, etal., BMC Med Genet. 2007 Jun 12;8:33.
56. [Imbalanced T cell-specific transcription factors T-bet and GATA-3 contributes to type 2 T helper cell polarization in asthmatic patients]. Liu CT, etal., Zhonghua Jie He He Hu Xi Za Zhi. 2004 Jun;27(6):398-402.
57. Immunosuppression with a combination of triptolide and cyclosporin A in rat vascularized groin flap allotransplantation. Liu F, etal., Plast Reconstr Surg. 2013 Mar;131(3):343e-50e. doi: 10.1097/PRS.0b013e31827c6daa.
58. Maraviroc attenuates trauma-hemorrhage-induced hepatic injury through PPAR gamma-dependent pathway in rats. Liu FC, etal., PLoS One. 2013 Oct 18;8(10):e78861. doi: 10.1371/journal.pone.0078861. eCollection 2013.
59. Regulation of CCL5 expression in smooth muscle cells following arterial injury. Liu H, etal., PLoS One. 2012;7(1):e30873. doi: 10.1371/journal.pone.0030873. Epub 2012 Jan 23.
60. Reduced expression of Th1-associated chemokine receptors on peripheral blood lymphocytes at diagnosis of type 1 diabetes. Lohmann T, etal., Diabetes. 2002 Aug;51(8):2474-80.
61. Role of CCR5 and its ligands in the control of vascular inflammation and leukocyte recruitment required for acute excitotoxic seizure induction and neural damage. Louboutin JP, etal., FASEB J. 2010 Oct 12.
62. Role of CCR5 in IFN-gamma-induced and cigarette smoke-induced emphysema. Ma B, etal., J Clin Invest. 2005 Dec;115(12):3460-72. Epub 2005 Nov 10.
63. CCR1 and CCR5 chemokine receptors are involved in fever induced by LPS (E. coli) and RANTES in rats. Machado RR, etal., Brain Res. 2007 Jun 9;.
64. The CCR5 delta 32 polymorphism (rs333) is not associated with Sjogren's syndrome or Type 1 Diabetes in Colombians. Maier-Moore JS, etal., Clin Immunol. 2013 Aug;148(2):206-8. doi: 10.1016/j.clim.2013.05.010. Epub 2013 May 24.
65. Toll like receptor 2 and CC chemokine receptor 5 cluster in the lipid raft enhances the susceptibility of Leishmania donovani infection in macrophages. Majumdar SB, etal., Indian J Exp Biol. 2014 Jan;52(1):17-29.
66. Association of CCR2-CCR5 haplotypes and CCL3L1 copy number with Kawasaki Disease, coronary artery lesions, and IVIG responses in Japanese children. Mamtani M, etal., PLoS One. 2010 Jul 7;5(7):e11458. doi: 10.1371/journal.pone.0011458.
67. CCR5 expression influences the progression of human breast cancer in a p53-dependent manner. Manes S, etal., J Exp Med. 2003 Nov 3;198(9):1381-9.
68. Chemokine (C-C motif) Receptor 5 Is an Important Pathological Regulator in the Development and Maintenance of Neuropathic Pain. Matsushita K, etal., Anesthesiology. 2014 Feb 28.
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PMID:35154162   PMID:35241150   PMID:35420441   PMID:35606863   PMID:35794176   PMID:35866628   PMID:36012436   PMID:36032469   PMID:36098885   PMID:36167571   PMID:36202168   PMID:36226448  
PMID:36251708   PMID:36380716   PMID:36433684   PMID:36478230   PMID:36522768   PMID:36902388   PMID:37321471   PMID:37388364   PMID:37489764   PMID:37611838   PMID:37690681   PMID:37769321  
PMID:37833581   PMID:37866719   PMID:37962280   PMID:37984413   PMID:38139265   PMID:38167636   PMID:38257729   PMID:38329228   PMID:38507500   PMID:38719543   PMID:38770825   PMID:39236430  


Genomics

Comparative Map Data
CCR5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38346,370,142 - 46,376,206 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl346,370,946 - 46,376,206 (+)EnsemblGRCh38hg38GRCh38
GRCh37346,411,633 - 46,417,697 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36346,386,637 - 46,392,701 (+)NCBINCBI36Build 36hg18NCBI36
Celera346,348,960 - 46,355,024 (+)NCBICelera
Cytogenetic Map3p21.31NCBI
HuRef346,455,276 - 46,461,340 (+)NCBIHuRef
CHM1_1346,361,630 - 46,367,689 (+)NCBICHM1_1
T2T-CHM13v2.0346,385,976 - 46,392,040 (+)NCBIT2T-CHM13v2.0
Ccr5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399123,921,557 - 123,934,153 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl9123,921,580 - 123,947,736 (+)EnsemblGRCm39 Ensembl
GRCm389124,121,543 - 124,127,183 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9124,121,543 - 124,147,699 (+)EnsemblGRCm38mm10GRCm38
MGSCv379124,036,282 - 124,041,922 (+)NCBIGRCm37MGSCv37mm9NCBIm37
Celera9124,872,533 - 124,878,180 (-)NCBICelera
Cytogenetic Map9F4NCBI
cM Map975.05NCBI
Ccr5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr88132,629,097 - 132,660,980 (+)NCBIGRCr8
mRatBN7.28123,752,423 - 123,757,538 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl8123,752,325 - 123,759,260 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx8129,343,076 - 129,348,190 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.08127,542,196 - 127,547,310 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.08125,360,117 - 125,365,231 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.08133,192,398 - 133,215,599 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8133,197,032 - 133,215,614 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.08132,362,664 - 132,367,779 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.48128,907,157 - 128,912,272 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.18128,929,594 - 128,932,000 (+)NCBI
Celera8122,847,673 - 122,852,786 (+)NCBICelera
Cytogenetic Map8q32NCBI
CCR5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2246,330,233 - 46,335,608 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1346,335,001 - 46,340,376 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0346,273,096 - 46,278,471 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1347,377,564 - 47,383,625 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl347,380,321 - 47,381,379 (+)Ensemblpanpan1.1panPan2
CCR5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12042,293,288 - 42,297,952 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2042,294,996 - 42,297,952 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2042,210,909 - 42,213,866 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02042,775,514 - 42,780,183 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2042,775,514 - 42,780,191 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12042,018,434 - 42,021,393 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02042,419,865 - 42,422,824 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02042,700,801 - 42,703,760 (-)NCBIUU_Cfam_GSD_1.0
CCR5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1329,383,303 - 29,387,895 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11329,382,383 - 29,387,902 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21332,546,545 - 32,551,732 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CCR5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1227,803,794 - 7,818,112 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666041159,335,032 - 159,341,705 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0

Variants

.
Variants in CCR5
30 total Variants

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
NM_001394783.1(CCR5):c.554_585del (p.Ser185fs) deletion CCR5-related disorder [RCV003974808]|Multiple sclerosis modifier of disease progression [RCV000008666]|Resistance to hepatitis C virus [RCV000008665]|Susceptibility to HIV infection [RCV000008663]|West Nile virus, susceptibility to [RCV000008664]|not provided [RCV000950102] Chr3:46373453..46373484 [GRCh38]
Chr3:46414944..46414975 [GRCh37]
Chr3:3p21.31
pathogenic|risk factor|benign|protective
NM_001394783.1(CCR5):c.894del (p.Phe299fs) deletion CCR5 POLYMORPHISM, ORIENTAL 1 [RCV000008667] Chr3:46373795 [GRCh38]
Chr3:46415286 [GRCh37]
Chr3:3p21.31
benign
NM_000579.4(CCR5):c.-301+246A>G single nucleotide variant Acquired immunodeficiency syndrome, delayed progression to [RCV000008671]|CCR5 PROMOTER POLYMORPHISM [RCV000008674]|CCR5-related disorder [RCV003944807]|Susceptibility to HIV infection [RCV000008675] Chr3:46370444 [GRCh38]
Chr3:46411935 [GRCh37]
Chr3:3p21.31
pathogenic|benign|protective
NM_000579.4(CCR5):c.-229C>T single nucleotide variant Human immunodeficiency virus type 1, increased perinatal transmission of [RCV000008672]|not specified [RCV001777133] Chr3:46370771 [GRCh38]
Chr3:46412262 [GRCh37]
Chr3:3p21.31
pathogenic|benign
CCR5, 2459A-G single nucleotide variant CCR5 PROMOTER POLYMORPHISM [RCV000008674]|Congenital human immunodeficiency virus [RCV000008675] Chr3:3p21 pathogenic|benign|protective
NM_001394783.1(CCR5):c.668G>A (p.Arg223Gln) single nucleotide variant CCR5 POLYMORPHISM, ORIENTAL 2 [RCV000008668]|not provided [RCV004709196] Chr3:46373570 [GRCh38]
Chr3:46415061 [GRCh37]
Chr3:3p21.31
benign
NM_001394783.1(CCR5):c.1004C>T (p.Ala335Val) single nucleotide variant CCR5 POLYMORPHISM, AFRICAN-AMERICAN [RCV000008669]|not provided [RCV004707850] Chr3:46373906 [GRCh38]
Chr3:46415397 [GRCh37]
Chr3:3p21.31
benign
NM_001394783.1(CCR5):c.303T>A (p.Cys101Ter) single nucleotide variant Susceptibility to HIV infection [RCV000008670] Chr3:46373205 [GRCh38]
Chr3:46414696 [GRCh37]
Chr3:3p21.31
pathogenic|protective
NM_001394783.1(CCR5):c.180G>T (p.Arg60Ser) single nucleotide variant Susceptibility to HIV infection [RCV000008673] Chr3:46373082 [GRCh38]
Chr3:46414573 [GRCh37]
Chr3:3p21.31
pathogenic|protective
GRCh38/hg38 3p21.31-21.2(chr3:45879883-50749922)x4 copy number gain See cases [RCV000133650] Chr3:45879883..50749922 [GRCh38]
Chr3:45921375..50787353 [GRCh37]
Chr3:45896379..50762357 [NCBI36]
Chr3:3p21.31-21.2
pathogenic
GRCh37/hg19 3p22.2-21.31(chr3:37028313-49929220)x3 copy number gain See cases [RCV000240519] Chr3:37028313..49929220 [GRCh37]
Chr3:3p22.2-21.31
likely pathogenic
GRCh37/hg19 3p26.3-q29(chr3:61892-197851986)x3 copy number gain See cases [RCV000511055] Chr3:61892..197851986 [GRCh37]
Chr3:3p26.3-q29
pathogenic
NM_001394783.1(CCR5):c.814T>C (p.Ser272Pro) single nucleotide variant not specified [RCV004325768] Chr3:46373716 [GRCh38]
Chr3:46415207 [GRCh37]
Chr3:3p21.31
uncertain significance
GRCh37/hg19 3p26.3-q29(chr3:61892-197851986) copy number gain See cases [RCV000512358] Chr3:61892..197851986 [GRCh37]
Chr3:3p26.3-q29
pathogenic
GRCh37/hg19 3p26.3-q29(chr3:60174-197948027)x3 copy number gain not provided [RCV000742133] Chr3:60174..197948027 [GRCh37]
Chr3:3p26.3-q29
pathogenic
GRCh37/hg19 3p26.3-q29(chr3:61495-197838262)x3 copy number gain not provided [RCV000742138] Chr3:61495..197838262 [GRCh37]
Chr3:3p26.3-q29
pathogenic
GRCh37/hg19 3p21.31-21.1(chr3:45153770-53878616) copy number gain not provided [RCV000767704] Chr3:45153770..53878616 [GRCh37]
Chr3:3p21.31-21.1
pathogenic
NM_001394783.1(CCR5):c.187A>T (p.Ser63Cys) single nucleotide variant Type 1 diabetes mellitus 22 [RCV001281053]|Type 1 diabetes mellitus 22 [RCV003224551]|not provided [RCV004692405] Chr3:46373089 [GRCh38]
Chr3:46414580 [GRCh37]
Chr3:3p21.31
uncertain significance
NM_001394783.1(CCR5):c.492C>G (p.Ile164Met) single nucleotide variant not provided [RCV001357263] Chr3:46373394 [GRCh38]
Chr3:46414885 [GRCh37]
Chr3:3p21.31
uncertain significance
NC_000003.11:g.(?_45435946)_(49137751_?)dup duplication Diffuse cerebral and cerebellar atrophy - intractable seizures - progressive microcephaly syndrome [RCV003116297] Chr3:45435946..49137751 [GRCh37]
Chr3:3p21.31
uncertain significance
GRCh37/hg19 3p21.31(chr3:44948482-49115809)x1 copy number loss not provided [RCV002279744] Chr3:44948482..49115809 [GRCh37]
Chr3:3p21.31
pathogenic
NM_001394783.1(CCR5):c.517G>T (p.Gly173Cys) single nucleotide variant not specified [RCV004312677] Chr3:46373419 [GRCh38]
Chr3:46414910 [GRCh37]
Chr3:3p21.31
uncertain significance
NM_001394783.1(CCR5):c.272C>T (p.Ala91Val) single nucleotide variant not specified [RCV004099182] Chr3:46373174 [GRCh38]
Chr3:46414665 [GRCh37]
Chr3:3p21.31
uncertain significance
NM_001394783.1(CCR5):c.893C>A (p.Ala298Asp) single nucleotide variant not specified [RCV004098035] Chr3:46373795 [GRCh38]
Chr3:46415286 [GRCh37]
Chr3:3p21.31
uncertain significance
NM_001394783.1(CCR5):c.274G>A (p.Ala92Thr) single nucleotide variant not specified [RCV004138880] Chr3:46373176 [GRCh38]
Chr3:46414667 [GRCh37]
Chr3:3p21.31
uncertain significance
NM_001394783.1(CCR5):c.1010C>T (p.Ser337Leu) single nucleotide variant not specified [RCV004103775] Chr3:46373912 [GRCh38]
Chr3:46415403 [GRCh37]
Chr3:3p21.31
uncertain significance
NM_001394783.1(CCR5):c.295A>T (p.Thr99Ser) single nucleotide variant not specified [RCV004175265] Chr3:46373197 [GRCh38]
Chr3:46414688 [GRCh37]
Chr3:3p21.31
uncertain significance
NM_001394783.1(CCR5):c.116T>G (p.Leu39Arg) single nucleotide variant not specified [RCV004189470] Chr3:46373018 [GRCh38]
Chr3:46414509 [GRCh37]
Chr3:3p21.31
uncertain significance
NM_001394783.1(CCR5):c.92G>A (p.Arg31His) single nucleotide variant not specified [RCV004183980] Chr3:46372994 [GRCh38]
Chr3:46414485 [GRCh37]
Chr3:3p21.31
uncertain significance
NM_001394783.1(CCR5):c.502A>G (p.Arg168Gly) single nucleotide variant not specified [RCV004242337] Chr3:46373404 [GRCh38]
Chr3:46414895 [GRCh37]
Chr3:3p21.31
uncertain significance
NM_001394783.1(CCR5):c.74T>A (p.Val25Glu) single nucleotide variant CCR5-related disorder [RCV003410720] Chr3:46372976 [GRCh38]
Chr3:46414467 [GRCh37]
Chr3:3p21.31
uncertain significance
NM_001394783.1(CCR5):c.715A>G (p.Thr239Ala) single nucleotide variant CCR5-related disorder [RCV003417142] Chr3:46373617 [GRCh38]
Chr3:46415108 [GRCh37]
Chr3:3p21.31
uncertain significance
NM_001394783.1(CCR5):c.69C>A (p.Ile23=) single nucleotide variant CCR5-related disorder [RCV003977060] Chr3:46372971 [GRCh38]
Chr3:46414462 [GRCh37]
Chr3:3p21.31
likely benign
NM_001394783.1(CCR5):c.741C>T (p.Phe247=) single nucleotide variant CCR5-related disorder [RCV003981516] Chr3:46373643 [GRCh38]
Chr3:46415134 [GRCh37]
Chr3:3p21.31
likely benign
NM_001394783.1(CCR5):c.316G>A (p.Gly106Arg) single nucleotide variant CCR5-related disorder [RCV003911774] Chr3:46373218 [GRCh38]
Chr3:46414709 [GRCh37]
Chr3:3p21.31
likely benign
NM_001394783.1(CCR5):c.423G>A (p.Thr141=) single nucleotide variant CCR5-related disorder [RCV003927391] Chr3:46373325 [GRCh38]
Chr3:46414816 [GRCh37]
Chr3:3p21.31
likely benign
NM_001394783.1(CCR5):c.980T>C (p.Phe327Ser) single nucleotide variant not specified [RCV004432984] Chr3:46373882 [GRCh38]
Chr3:46415373 [GRCh37]
Chr3:3p21.31
uncertain significance
NM_001394783.1(CCR5):c.1031G>A (p.Gly344Glu) single nucleotide variant not specified [RCV004432981] Chr3:46373933 [GRCh38]
Chr3:46415424 [GRCh37]
Chr3:3p21.31
uncertain significance
NM_001394783.1(CCR5):c.322T>C (p.Tyr108His) single nucleotide variant not specified [RCV004432982] Chr3:46373224 [GRCh38]
Chr3:46414715 [GRCh37]
Chr3:3p21.31
uncertain significance
NM_001394783.1(CCR5):c.641A>G (p.Tyr214Cys) single nucleotide variant not specified [RCV004432983] Chr3:46373543 [GRCh38]
Chr3:46415034 [GRCh37]
Chr3:3p21.31
uncertain significance
NM_001394783.1(CCR5):c.358A>G (p.Ile120Val) single nucleotide variant not specified [RCV004609920] Chr3:46373260 [GRCh38]
Chr3:46414751 [GRCh37]
Chr3:3p21.31
uncertain significance
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1947
Count of miRNA genes:692
Interacting mature miRNAs:770
Transcripts:ENST00000292303, ENST00000343801, ENST00000445772
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1298487BFD1_HBody fluid distribution QTL 1 (human)3.94Body fluid distributionimpedance ratio33638071262380712Human
1298489RA4_HRheumatoid arthritis QTL 4 (human)0.0283Joint/bone inflammationrheumatoid arthritis33638071262380712Human
1643509BW293_HBody Weight QTL 293 (human)1.42Body weightBMI33638071262380712Human
597041723GWAS1137797_HCCL4 measurement QTL GWAS1137797 (human)8e-83CCL4 measurement34637348446373485Human
2316061GLUCO194_HGlucose level QTL 194 (human)0.02Glucose level32338077449380774Human
2289308BW392_HBody weight QTL 392 (human)1.42Body weightBMI33638071262380712Human
407166955GWAS815931_Hgranulocyte percentage of myeloid white cells QTL GWAS815931 (human)1e-09granulocyte percentage of myeloid white cells34637106846371069Human
597328021GWAS1424095_HCCL4 measurement QTL GWAS1424095 (human)3e-26CCL4 measurement34637345246373453Human

Markers in Region
RH65248  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37346,415,230 - 46,415,413UniSTSGRCh37
Build 36346,390,234 - 46,390,417RGDNCBI36
Celera346,352,557 - 46,352,740RGD
Cytogenetic Map3p21.31UniSTS
HuRef346,458,873 - 46,459,056UniSTS
CCR5_4  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37346,416,972 - 46,417,796UniSTSGRCh37
Build 36346,391,976 - 46,392,800RGDNCBI36
Celera346,354,299 - 46,355,123RGD
HuRef346,460,615 - 46,461,439UniSTS
D3S4504  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37346,415,001 - 46,415,430UniSTSGRCh37
Build 36346,390,005 - 46,390,434RGDNCBI36
Celera346,352,328 - 46,352,757RGD
Cytogenetic Map3p21.31UniSTS
HuRef346,458,644 - 46,459,073UniSTS
STS-X91492  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37346,415,242 - 46,415,418UniSTSGRCh37
Build 36346,390,246 - 46,390,422RGDNCBI36
Celera346,352,569 - 46,352,745RGD
Cytogenetic Map3p21.31UniSTS
HuRef346,458,885 - 46,459,061UniSTS
TNG Radiation Hybrid Map329229.0UniSTS
GeneMap99-GB4 RH Map3148.94UniSTS
NCBI RH Map3454.1UniSTS


Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
entire extraembryonic component
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
pharyngeal arch
renal system
reproductive system
respiratory system
sensory system
visual system
1204 2326 2707 2205 4514 1698 2114 4 606 1640 443 1993 6751 6118 7 3537 1 798 1627 1404 165 1

Sequence

Nucleotide Sequences
RefSeq Transcripts NG_012637 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_000579 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001100168 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001394783 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB182982 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB182984 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB182986 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB182988 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB182990 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC098613 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF009962 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF011500 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF011501 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF011502 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF011503 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF011504 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF011505 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF011506 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF011507 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF011508 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF011509 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF011510 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF011511 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF011512 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF011513 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF011514 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF011515 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF011516 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF011517 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF011518 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF011519 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF011520 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF011521 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF011522 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF011523 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF011524 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF011525 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF011526 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF011527 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF011528 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF011529 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF011530 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF011531 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF011532 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF011533 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF011534 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF011535 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF011536 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF011537 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF017632 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF032132 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF052244 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF052539 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF056019 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF056020 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF082742 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF109379 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF109380 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF109381 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF109382 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF109383 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF161909 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF161910 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF161911 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF161912 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF161913 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF161914 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF161915 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF161916 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF161917 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF161918 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF161919 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF161920 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF161921 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF246899 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF246900 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF246901 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF246902 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF246903 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF246904 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF246905 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF246906 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF246907 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF246908 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF246909 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF246910 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF246911 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF246912 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF246913 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF246914 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF246915 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF246916 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF246917 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF246918 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF246919 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF246920 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF246921 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF246922 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF246923 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF246924 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF246925 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AH005786 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK292132 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK314882 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AX256200 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AX705068 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY221093 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY463213 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY463214 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY463215 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY744141 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY874119 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY874120 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY874121 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY947540 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC038398 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471055 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068275 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DA818906 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DQ217934 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DQ402084 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DQ402085 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DQ402086 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  EF202087 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  EF202088 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  EF202089 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  EF375727 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  EF375728 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  EF394447 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  EF408698 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  EF408699 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  EF408700 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  EU586270 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  EU586271 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  EU586272 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FB584189 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GQ121035 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GQ847744 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GQ847745 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GQ847746 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GQ847747 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GQ847748 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GQ847749 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GQ917109 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HC295434 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JQ291182 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JQ291183 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JQ291184 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JQ291185 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JQ291186 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JQ291187 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JQ291188 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JQ291189 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JQ291190 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JQ291191 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JQ291192 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JQ291193 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JQ291194 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JQ291195 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JQ291196 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JQ291197 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JQ291198 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JQ291199 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JQ291200 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JQ291201 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JQ291202 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JQ291203 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JQ291204 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JQ291205 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JQ291206 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JQ291207 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JQ291208 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JQ291209 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JQ291210 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JQ291211 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JQ291212 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JQ291213 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JQ291214 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JQ291215 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JQ291216 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JQ291217 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JQ291218 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JQ291219 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JQ291220 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JQ291221 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JQ291222 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JQ291223 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JQ291224 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JQ291225 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JQ291226 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JQ291227 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JQ291228 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JQ291229 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JQ291230 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JQ291231 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JQ291232 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JX141387 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles