LYZL1 (lysozyme like 1) - Rat Genome Database

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Gene: LYZL1 (lysozyme like 1) Homo sapiens
Analyze
Symbol: LYZL1
Name: lysozyme like 1
RGD ID: 1350038
HGNC Page HGNC:30502
Description: Predicted to enable lysozyme activity. Predicted to be located in extracellular region.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: bA534G20.1; KAAG648; LYC2; lysozyme D1; lysozyme-like 1; lysozyme-like protein 1; LYZD1; MGC33408; PRO1278
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381029,289,070 - 29,318,328 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1029,289,061 - 29,318,328 (+)EnsemblGRCh38hg38GRCh38
GRCh371029,577,999 - 29,600,161 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361029,617,996 - 29,640,164 (+)NCBINCBI36Build 36hg18NCBI36
Build 341029,618,029 - 29,640,160NCBI
Celera1029,343,639 - 29,365,823 (+)NCBICelera
Cytogenetic Map10p12.1-p11.23NCBI
HuRef1029,297,931 - 29,320,046 (+)NCBIHuRef
CHM1_11029,578,304 - 29,600,473 (+)NCBICHM1_1
T2T-CHM13v2.01029,320,734 - 29,350,003 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
Additional References at PubMed
PMID:11329013   PMID:12975309   PMID:15164054   PMID:15342556   PMID:15489334   PMID:18519826   PMID:20379614   PMID:21873635   PMID:23362303   PMID:28514442   PMID:33961781  


Genomics

Comparative Map Data
LYZL1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381029,289,070 - 29,318,328 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1029,289,061 - 29,318,328 (+)EnsemblGRCh38hg38GRCh38
GRCh371029,577,999 - 29,600,161 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361029,617,996 - 29,640,164 (+)NCBINCBI36Build 36hg18NCBI36
Build 341029,618,029 - 29,640,160NCBI
Celera1029,343,639 - 29,365,823 (+)NCBICelera
Cytogenetic Map10p12.1-p11.23NCBI
HuRef1029,297,931 - 29,320,046 (+)NCBIHuRef
CHM1_11029,578,304 - 29,600,473 (+)NCBICHM1_1
T2T-CHM13v2.01029,320,734 - 29,350,003 (+)NCBIT2T-CHM13v2.0
Lyzl1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39184,165,862 - 4,182,232 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl184,165,832 - 4,182,232 (+)EnsemblGRCm39 Ensembl
GRCm38184,165,832 - 4,182,236 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl184,165,832 - 4,182,232 (+)EnsemblGRCm38mm10GRCm38
MGSCv37184,165,830 - 4,182,234 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36184,165,830 - 4,182,234 (+)NCBIMGSCv36mm8
Celera184,212,713 - 4,229,280 (+)NCBICelera
Cytogenetic Map18A1NCBI
cM Map182.57NCBI
Lyzl1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81758,225,664 - 58,239,120 (-)NCBIGRCr8
mRatBN7.21753,530,437 - 53,543,877 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1753,530,442 - 53,543,866 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1756,698,446 - 56,712,223 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01760,701,381 - 60,715,164 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01754,859,503 - 54,873,266 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01756,255,613 - 56,269,245 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1756,255,608 - 56,269,242 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01754,292,574 - 54,306,206 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41762,058,344 - 62,071,768 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1749,523,538 - 49,536,962 (-)NCBICelera
Cytogenetic Map17q12.1NCBI
LOC102016078
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495542921,543,970 - 21,562,921 (+)NCBIChiLan1.0ChiLan1.0
LOC100976701
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2841,961,912 - 41,984,017 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11041,967,239 - 41,989,273 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01029,442,419 - 29,464,512 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11029,797,709 - 29,820,438 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1029,797,709 - 29,820,438 (+)Ensemblpanpan1.1panPan2
LOC487083
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1216,911,318 - 16,929,017 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha214,407,481 - 14,425,174 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0215,152,776 - 15,170,530 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1214,596,809 - 14,614,500 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0214,483,684 - 14,501,394 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0214,756,648 - 14,774,348 (-)NCBIUU_Cfam_GSD_1.0
LOC101956585
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244093449,061,182 - 9,072,612 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049366133,613,910 - 3,623,104 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LYZL1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1928,897,347 - 28,919,428 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605134,966,072 - 34,987,931 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Lyzl1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248052,468,979 - 2,483,443 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in LYZL1
27 total Variants

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 10p12.1-11.23(chr10:27046685-30228891)x1 copy number loss See cases [RCV000052503] Chr10:27046685..30228891 [GRCh38]
Chr10:27335614..30517820 [GRCh37]
Chr10:27375620..30557826 [NCBI36]
Chr10:10p12.1-11.23		 pathogenic
GRCh38/hg38 10p12.1-11.23(chr10:27767970-30046085)x3 copy number gain See cases [RCV000053556] Chr10:27767970..30046085 [GRCh38]
Chr10:28056899..30335014 [GRCh37]
Chr10:28096905..30375020 [NCBI36]
Chr10:10p12.1-11.23		 pathogenic
GRCh38/hg38 10p12.31-11.22(chr10:19088161-32732293)x3 copy number gain See cases [RCV000139427] Chr10:19088161..32732293 [GRCh38]
Chr10:19377090..33021221 [GRCh37]
Chr10:19417096..33061227 [NCBI36]
Chr10:10p12.31-11.22		 likely pathogenic
GRCh38/hg38 10p12.1-11.23(chr10:26823016-30248926)x1 copy number loss See cases [RCV000139515] Chr10:26823016..30248926 [GRCh38]
Chr10:27111945..30537855 [GRCh37]
Chr10:27151951..30577861 [NCBI36]
Chr10:10p12.1-11.23		 pathogenic
GRCh38/hg38 10p15.1-q11.22(chr10:4604734-48074662)x3 copy number gain See cases [RCV000141497] Chr10:4604734..48074662 [GRCh38]
Chr10:4646926..47531169 [GRCh37]
Chr10:4636926..47125152 [NCBI36]
Chr10:10p15.1-q11.22		 benign
GRCh37/hg19 10p15.3-11.23(chr10:100026-30278548)x3 copy number gain See cases [RCV000447131] Chr10:100026..30278548 [GRCh37]
Chr10:10p15.3-11.23		 pathogenic
GRCh37/hg19 10p15.3-q26.3(chr10:93297-135378918)x3 copy number gain See cases [RCV000448750] Chr10:93297..135378918 [GRCh37]
Chr10:10p15.3-q26.3		 pathogenic
GRCh37/hg19 10p15.3-q26.3(chr10:100027-135427143) copy number gain See cases [RCV000511389] Chr10:100027..135427143 [GRCh37]
Chr10:10p15.3-q26.3		 pathogenic|uncertain significance
GRCh37/hg19 10p15.3-q11.23(chr10:100026-50961640)x3 copy number gain See cases [RCV000510893] Chr10:100026..50961640 [GRCh37]
Chr10:10p15.3-q11.23		 pathogenic
GRCh37/hg19 10p15.3-q26.3(chr10:100027-135427143)x3 copy number gain See cases [RCV000510861] Chr10:100027..135427143 [GRCh37]
Chr10:10p15.3-q26.3		 pathogenic
GRCh37/hg19 10p15.3-q26.3(chr10:73232-135524321)x3 copy number gain not provided [RCV000749464] Chr10:73232..135524321 [GRCh37]
Chr10:10p15.3-q26.3		 pathogenic
GRCh37/hg19 10p15.3-q26.3(chr10:98087-135477883)x3 copy number gain not provided [RCV000749465] Chr10:98087..135477883 [GRCh37]
Chr10:10p15.3-q26.3		 pathogenic
NM_032517.6(LYZL1):c.139+7C>T single nucleotide variant not provided [RCV000948369] Chr10:29292013 [GRCh38]
Chr10:29580942 [GRCh37]
Chr10:10p12.1		 benign
NM_032517.6(LYZL1):c.139+9C>A single nucleotide variant not provided [RCV000948370] Chr10:29292015 [GRCh38]
Chr10:29580944 [GRCh37]
Chr10:10p12.1		 benign
GRCh37/hg19 10p12.1-11.23(chr10:29204926-30604037)x3 copy number gain not provided [RCV001006303] Chr10:29204926..30604037 [GRCh37]
Chr10:10p12.1-11.23		 uncertain significance
GRCh37/hg19 10p15.3-q11.22(chr10:135655-47688677)x4 copy number gain Mosaic supernumerary isodicentric chromosome 10 [RCV001825164] Chr10:135655..47688677 [GRCh37]
Chr10:10p15.3-q11.22		 not provided
GRCh37/hg19 10p15.1-11.21(chr10:6273934-34732521) copy number gain not specified [RCV002052863] Chr10:6273934..34732521 [GRCh37]
Chr10:10p15.1-11.21		 pathogenic
NM_032517.6(LYZL1):c.253C>T (p.Arg85Cys) single nucleotide variant not specified [RCV004183306] Chr10:29292632 [GRCh38]
Chr10:29581561 [GRCh37]
Chr10:10p12.1		 uncertain significance
NM_032517.6(LYZL1):c.-14G>A single nucleotide variant not specified [RCV004183305] Chr10:29291854 [GRCh38]
Chr10:29580783 [GRCh37]
Chr10:10p12.1		 likely benign
NM_032517.6(LYZL1):c.-129G>A single nucleotide variant not specified [RCV004160539] Chr10:29289127 [GRCh38]
Chr10:29578056 [GRCh37]
Chr10:10p12.1		 uncertain significance
NM_032517.6(LYZL1):c.137A>C (p.Asn46Thr) single nucleotide variant not specified [RCV004091590] Chr10:29292004 [GRCh38]
Chr10:29580933 [GRCh37]
Chr10:10p12.1		 uncertain significance
NM_032517.6(LYZL1):c.254G>A (p.Arg85His) single nucleotide variant not specified [RCV004230320] Chr10:29292633 [GRCh38]
Chr10:29581562 [GRCh37]
Chr10:10p12.1		 likely benign
NM_032517.6(LYZL1):c.-86C>T single nucleotide variant not specified [RCV004116367] Chr10:29289170 [GRCh38]
Chr10:29578099 [GRCh37]
Chr10:10p12.1		 uncertain significance
NM_032517.6(LYZL1):c.289G>A (p.Ala97Thr) single nucleotide variant not specified [RCV004164696] Chr10:29292668 [GRCh38]
Chr10:29581597 [GRCh37]
Chr10:10p12.1		 uncertain significance
NM_032517.6(LYZL1):c.71G>C (p.Arg24Pro) single nucleotide variant not specified [RCV004269366] Chr10:29291938 [GRCh38]
Chr10:29580867 [GRCh37]
Chr10:10p12.1		 uncertain significance
GRCh37/hg19 10p13-q26.3(chr10:12829206-135427143) copy number loss Distal 10q deletion syndrome [RCV003319583] Chr10:12829206..135427143 [GRCh37]
Chr10:10p13-q26.3		 pathogenic
GRCh37/hg19 10p14-q26.3(chr10:11138692-135427143) copy number gain Distal trisomy 10q [RCV003319593] Chr10:11138692..135427143 [GRCh37]
Chr10:10p14-q26.3		 pathogenic
NM_032517.6(LYZL1):c.196G>A (p.Asp66Asn) single nucleotide variant not specified [RCV004362049] Chr10:29292575 [GRCh38]
Chr10:29581504 [GRCh37]
Chr10:10p12.1		 uncertain significance
NM_032517.6(LYZL1):c.216T>C (p.Tyr72=) single nucleotide variant not provided [RCV003417301] Chr10:29292595 [GRCh38]
Chr10:29581524 [GRCh37]
Chr10:10p12.1		 likely benign
GRCh37/hg19 10p12.1-11.23(chr10:25646101-30715668)x1 copy number loss not specified [RCV003986880] Chr10:25646101..30715668 [GRCh37]
Chr10:10p12.1-11.23		 pathogenic
NM_032517.6(LYZL1):c.-10G>T single nucleotide variant not specified [RCV004411098] Chr10:29291858 [GRCh38]
Chr10:29580787 [GRCh37]
Chr10:10p12.1		 uncertain significance
NM_032517.6(LYZL1):c.49G>A (p.Ala17Thr) single nucleotide variant not specified [RCV004411099] Chr10:29291916 [GRCh38]
Chr10:29580845 [GRCh37]
Chr10:10p12.1		 likely benign
NM_032517.6(LYZL1):c.276C>G (p.Asn92Lys) single nucleotide variant not specified [RCV004411101] Chr10:29292655 [GRCh38]
Chr10:29581584 [GRCh37]
Chr10:10p12.1		 uncertain significance
NM_032517.6(LYZL1):c.428A>T (p.Lys143Ile) single nucleotide variant not specified [RCV004411102] Chr10:29311040 [GRCh38]
Chr10:29599969 [GRCh37]
Chr10:10p11.23		 uncertain significance
NM_032517.6(LYZL1):c.439G>T (p.Val147Phe) single nucleotide variant not specified [RCV004411103] Chr10:29311051 [GRCh38]
Chr10:29599980 [GRCh37]
Chr10:10p11.23		 uncertain significance
NM_032517.6(LYZL1):c.52G>A (p.Glu18Lys) single nucleotide variant not specified [RCV004636351] Chr10:29291919 [GRCh38]
Chr10:29580848 [GRCh37]
Chr10:10p12.1		 uncertain significance
NM_032517.6(LYZL1):c.95C>T (p.Ser32Leu) single nucleotide variant not specified [RCV004640367] Chr10:29291962 [GRCh38]
Chr10:29580891 [GRCh37]
Chr10:10p12.1		 uncertain significance
NM_032517.6(LYZL1):c.286G>A (p.Val96Ile) single nucleotide variant not specified [RCV004636352] Chr10:29292665 [GRCh38]
Chr10:29581594 [GRCh37]
Chr10:10p12.1		 uncertain significance
NM_032517.6(LYZL1):c.71G>A (p.Arg24His) single nucleotide variant not specified [RCV004640368] Chr10:29291938 [GRCh38]
Chr10:29580867 [GRCh37]
Chr10:10p12.1		 uncertain significance
NM_032517.6(LYZL1):c.278A>G (p.His93Arg) single nucleotide variant not specified [RCV004942369] Chr10:29292657 [GRCh38]
Chr10:29581586 [GRCh37]
Chr10:10p12.1		 uncertain significance
NM_032517.6(LYZL1):c.404G>T (p.Gly135Val) single nucleotide variant not specified [RCV004942370] Chr10:29311016 [GRCh38]
Chr10:29599945 [GRCh37]
Chr10:10p11.23		 uncertain significance
NM_032517.6(LYZL1):c.28A>G (p.Ile10Val) single nucleotide variant not specified [RCV004942367] Chr10:29291895 [GRCh38]
Chr10:29580824 [GRCh37]
Chr10:10p12.1		 uncertain significance
NM_032517.6(LYZL1):c.134G>T (p.Gly45Val) single nucleotide variant not specified [RCV004942368] Chr10:29292001 [GRCh38]
Chr10:29580930 [GRCh37]
Chr10:10p12.1		 uncertain significance
NM_032517.6(LYZL1):c.-45A>G single nucleotide variant not specified [RCV004942366] Chr10:29289211 [GRCh38]
Chr10:29578140 [GRCh37]
Chr10:10p12.1		 uncertain significance
NM_032517.6(LYZL1):c.-39A>G single nucleotide variant not specified [RCV004942365] Chr10:29289217 [GRCh38]
Chr10:29578146 [GRCh37]
Chr10:10p12.1		 uncertain significance
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:294
Count of miRNA genes:273
Interacting mature miRNAs:281
Transcripts:ENST00000375500, ENST00000494304
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1643515BW287_HBody Weight QTL 287 (human)2.450.0004Body weightBMI101842411044424110Human
597057155GWAS1153229_HCleft palate, tobacco smoke exposure measurement, cleft lip, parental genotype effect measurement QTL GWAS1153229 (human)0.000002Cleft palate, tobacco smoke exposure measurement, cleft lip, parental genotype effect measurement102930586229305863Human
1300009BW22_HBody weight QTL 22 (human)2.32Body weightbody mass index101842411044424110Human

Markers in Region
SHGC-142069  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371030,915,477 - 30,915,767UniSTSGRCh37
GRCh371029,580,874 - 29,581,164UniSTSGRCh37
Build 361029,620,880 - 29,621,170RGDNCBI36
Celera1029,346,538 - 29,346,828RGD
Celera1030,680,992 - 30,681,282UniSTS
Cytogenetic Map10p12.1UniSTS
Cytogenetic Map10p11.23UniSTS
HuRef1030,634,405 - 30,634,695UniSTS
HuRef1029,300,762 - 29,301,052UniSTS
TNG Radiation Hybrid Map1016346.0UniSTS


Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
117 288 374 278 836 508 570 348 163 322 217 1234 744 1 783 205 613 185 26

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_032517 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005252627 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017016791 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054366957 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054366958 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_008488300 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_428650 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AI393331 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL158167 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY358694 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC021730 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BF057063 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BG209290 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BP369317 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471072 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068268 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HC007138 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HG931737 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENST00000375500   ⟹   ENSP00000364650
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1029,289,061 - 29,311,228 (+)Ensembl
Ensembl Acc Id: ENST00000494304   ⟹   ENSP00000434629
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1029,291,925 - 29,318,328 (+)Ensembl
Ensembl Acc Id: ENST00000649382   ⟹   ENSP00000498092
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1029,289,070 - 29,311,232 (+)Ensembl
RefSeq Acc Id: NM_032517   ⟹   NP_115906
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381029,289,070 - 29,311,232 (+)NCBI
GRCh371029,577,980 - 29,607,158 (+)NCBI
Build 361029,617,996 - 29,640,164 (+)NCBI Archive
Celera1029,343,639 - 29,365,823 (+)RGD
HuRef1029,297,931 - 29,320,046 (+)ENTREZGENE
CHM1_11029,578,304 - 29,600,473 (+)NCBI
T2T-CHM13v2.01029,320,734 - 29,342,906 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005252627   ⟹   XP_005252684
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381029,289,070 - 29,318,328 (+)NCBI
GRCh371029,577,980 - 29,607,158 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017016791   ⟹   XP_016872280
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381029,289,070 - 29,304,505 (+)NCBI
Sequence:
RefSeq Acc Id: XM_054366957   ⟹   XP_054222932
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01029,320,734 - 29,350,003 (+)NCBI
RefSeq Acc Id: XM_054366958   ⟹   XP_054222933
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01029,320,734 - 29,335,295 (+)NCBI
RefSeq Acc Id: XR_008488300
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01029,320,734 - 29,350,003 (+)NCBI
RefSeq Acc Id: XR_428650
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381029,289,070 - 29,318,328 (+)NCBI
Sequence:
RefSeq Acc Id: NP_115906   ⟸   NM_032517
- Peptide Label: precursor
- UniProtKB: Q6UWQ5 (UniProtKB/Swiss-Prot),   Q5T921 (UniProtKB/Swiss-Prot),   Q8WW16 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_005252684   ⟸   XM_005252627
- Peptide Label: isoform X1
- UniProtKB: A0A080YUZ8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_016872280   ⟸   XM_017016791
- Peptide Label: isoform X2
- Sequence:
Ensembl Acc Id: ENSP00000498092   ⟸   ENST00000649382
Ensembl Acc Id: ENSP00000364650   ⟸   ENST00000375500
Ensembl Acc Id: ENSP00000434629   ⟸   ENST00000494304
RefSeq Acc Id: XP_054222932   ⟸   XM_054366957
- Peptide Label: isoform X1
- UniProtKB: A0A080YUZ8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054222933   ⟸   XM_054366958
- Peptide Label: isoform X2
Protein Domains
C-type lysozyme   Glycosyl hydrolases family 22 (GH22)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q6UWQ5-F1-model_v2 AlphaFold Q6UWQ5 1-148 view protein structure

Promoters
RGD ID:7217275
Promoter ID:EPDNEW_H14384
Type:initiation region
Name:LYZL1_1
Description:lysozyme like 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh381029,289,092 - 29,289,152EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:30502 AgrOrtholog
COSMIC LYZL1 COSMIC
Ensembl Genes ENSG00000120563 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENST00000375500 ENTREZGENE
  ENST00000375500.8 UniProtKB/Swiss-Prot
  ENST00000649382 ENTREZGENE
  ENST00000649382.2 UniProtKB/Swiss-Prot
Gene3D-CATH 1.10.530.10 UniProtKB/Swiss-Prot
GTEx ENSG00000120563 GTEx
HGNC ID HGNC:30502 ENTREZGENE
Human Proteome Map LYZL1 Human Proteome Map
InterPro Glyco_hydro_22 UniProtKB/Swiss-Prot
  Glyco_hydro_22_CS UniProtKB/Swiss-Prot
  Glyco_hydro_22_lys UniProtKB/Swiss-Prot
  Lysozyme-like_dom_sf UniProtKB/Swiss-Prot
KEGG Report hsa:84569 UniProtKB/Swiss-Prot
NCBI Gene 84569 ENTREZGENE
PANTHER PTHR11407 UniProtKB/Swiss-Prot
  PTHR11407:SF62 UniProtKB/Swiss-Prot
Pfam Lys UniProtKB/Swiss-Prot
PharmGKB PA134868520 PharmGKB
PRINTS LYSOZYME UniProtKB/Swiss-Prot
  LYZLACT UniProtKB/Swiss-Prot
PROSITE LACTALBUMIN_LYSOZYME_1 UniProtKB/Swiss-Prot
  LACTALBUMIN_LYSOZYME_2 UniProtKB/Swiss-Prot
SMART LYZ1 UniProtKB/Swiss-Prot
Superfamily-SCOP SSF53955 UniProtKB/Swiss-Prot
UniProt A0A080YUZ8 ENTREZGENE, UniProtKB/TrEMBL
  H0YDZ2_HUMAN UniProtKB/TrEMBL
  LYZL1_HUMAN UniProtKB/Swiss-Prot
  Q5T921 ENTREZGENE
  Q6UWQ5 ENTREZGENE
  Q8WW16 ENTREZGENE
UniProt Secondary Q5T921 UniProtKB/Swiss-Prot
  Q8WW16 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-12-22 LYZL1  lysozyme like 1    lysozyme-like 1  Symbol and/or name change 5135510 APPROVED