OR4D10 (olfactory receptor family 4 subfamily D member 10) - Rat Genome Database

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Gene: OR4D10 (olfactory receptor family 4 subfamily D member 10) Homo sapiens
Analyze
Symbol: OR4D10
Name: olfactory receptor family 4 subfamily D member 10
RGD ID: 1348576
HGNC Page HGNC:15173
Description: Predicted to enable olfactory receptor activity. Predicted to be involved in G protein-coupled receptor signaling pathway and detection of chemical stimulus involved in sensory perception of smell. Predicted to be located in plasma membrane; INTERACTS WITH CGP 52608; tebuconazole; 1,2-dichloroethane (ortholog).
Type: pseudo (Ensembl: protein-coding)
Previously known as: olfactory receptor 4D10; olfactory receptor OR11-251; olfactory receptor, family 4, subfamily D, member 10 pseudogene; OR11-251; OR4D10P; OST711; seven transmembrane helix receptor
RGD Orthologs
Mouse
Rat
Bonobo
Dog
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381159,473,315 - 59,479,361 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1159,473,315 - 59,479,361 (+)EnsemblGRCh38hg38GRCh38
GRCh371159,240,788 - 59,246,834 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361159,001,479 - 59,002,414 (+)NCBINCBI36Build 36hg18NCBI36
Build 341159,001,478 - 59,002,414NCBI
Celera1156,606,185 - 56,607,120 (+)NCBICelera
Cytogenetic Map11q12.1NCBI
HuRef1155,592,733 - 55,593,668 (+)NCBIHuRef
CHM1_11159,110,678 - 59,111,613 (+)NCBICHM1_1
T2T-CHM13v2.01159,424,187 - 59,430,238 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
membrane  (IEA)
plasma membrane  (IBA,IEA)

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Human Phenotype
References

References - curated
# Reference Title Reference Citation
1. GOAs Human GO annotations GOA_HUMAN data from the GO Consortium
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data
OR4D10
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381159,473,315 - 59,479,361 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1159,473,315 - 59,479,361 (+)EnsemblGRCh38hg38GRCh38
GRCh371159,240,788 - 59,246,834 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361159,001,479 - 59,002,414 (+)NCBINCBI36Build 36hg18NCBI36
Build 341159,001,478 - 59,002,414NCBI
Celera1156,606,185 - 56,607,120 (+)NCBICelera
Cytogenetic Map11q12.1NCBI
HuRef1155,592,733 - 55,593,668 (+)NCBIHuRef
CHM1_11159,110,678 - 59,111,613 (+)NCBICHM1_1
T2T-CHM13v2.01159,424,187 - 59,430,238 (+)NCBIT2T-CHM13v2.0
Or4d10b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391912,036,173 - 12,037,114 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1912,035,988 - 12,040,046 (-)EnsemblGRCm39 Ensembl
GRCm381912,058,809 - 12,059,750 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1912,058,624 - 12,062,682 (-)EnsemblGRCm38mm10GRCm38
MGSCv371912,133,299 - 12,134,240 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361912,125,854 - 12,126,795 (-)NCBIMGSCv36mm8
Celera1912,756,191 - 12,757,132 (-)NCBICelera
Cytogenetic Map19ANCBI
cM Map198.58NCBI
Or4d10c
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81218,441,392 - 218,442,327 (-)NCBIGRCr8
mRatBN7.21209,016,663 - 209,017,598 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1209,015,124 - 209,020,125 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1217,391,321 - 217,392,256 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01224,367,473 - 224,368,408 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01217,145,756 - 217,146,691 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01228,523,504 - 228,524,439 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1228,523,504 - 228,524,439 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01235,587,344 - 235,588,279 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41214,940,573 - 214,941,508 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11215,099,002 - 215,099,938 (-)NCBI
Celera1206,482,817 - 206,483,752 (-)NCBICelera
Cytogenetic Map1q43NCBI
LOC100974724
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2960,611,350 - 60,612,288 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11161,654,471 - 61,655,406 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01154,705,497 - 54,706,508 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11158,157,201 - 58,158,212 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1158,157,252 - 58,158,187 (+)Ensemblpanpan1.1panPan2
OR4D9C
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11837,249,661 - 37,250,596 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1837,249,661 - 37,250,596 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1836,899,044 - 36,899,979 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01837,890,200 - 37,891,135 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1837,890,200 - 37,891,135 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11837,479,712 - 37,480,647 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01837,055,850 - 37,056,785 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01837,685,536 - 37,686,471 (-)NCBIUU_Cfam_GSD_1.0
LOC110259087
(Sus scrofa - pig)
No map positions available.
LOC103234902
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1114,114,798 - 14,117,607 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl114,116,041 - 14,116,958 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666038111,437,966 - 111,438,971 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0

Variants

.
Variants in OR4D10
19 total Variants

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
NM_001004705.1(OR4D10):c.122G>A (p.Gly41Glu) single nucleotide variant Malignant melanoma [RCV000062297] Chr11:59477551 [GRCh38]
Chr11:59245024 [GRCh37]
Chr11:59001600 [NCBI36]
Chr11:11q12.1
not provided
GRCh37/hg19 11p15.5-q25(chr11:230616-134938470) copy number gain See cases [RCV000511729] Chr11:230616..134938470 [GRCh37]
Chr11:11p15.5-q25
pathogenic
GRCh37/hg19 11p15.5-q25(chr11:230616-134938470)x3 copy number gain See cases [RCV000510881] Chr11:230616..134938470 [GRCh37]
Chr11:11p15.5-q25
pathogenic
NM_001004705.2(OR4D10):c.155A>C (p.Glu52Ala) single nucleotide variant not specified [RCV004323542] Chr11:59477584 [GRCh38]
Chr11:59245057 [GRCh37]
Chr11:11q12.1
uncertain significance
NM_001004705.2(OR4D10):c.311T>A (p.Phe104Tyr) single nucleotide variant not specified [RCV004323602] Chr11:59477740 [GRCh38]
Chr11:59245213 [GRCh37]
Chr11:11q12.1
uncertain significance
GRCh37/hg19 11q12.1-12.3(chr11:58935215-62177656)x3 copy number gain not provided [RCV000683362] Chr11:58935215..62177656 [GRCh37]
Chr11:11q12.1-12.3
likely pathogenic
GRCh37/hg19 11p15.5-q25(chr11:198510-134934063)x3 copy number gain not provided [RCV000737348] Chr11:198510..134934063 [GRCh37]
Chr11:11p15.5-q25
pathogenic
GRCh37/hg19 11p15.5-q25(chr11:70864-134938470)x3 copy number gain not provided [RCV000749874] Chr11:70864..134938470 [GRCh37]
Chr11:11p15.5-q25
pathogenic
NM_001004708.1(OR4D6):c.-19514_20175del deletion Preeclampsia [RCV000161631] Chr11:59437447..59477135 [GRCh38]
Chr11:59204920..59244608 [GRCh37]
Chr11:11q12.1
not provided
Single allele deletion Intellectual disability [RCV001293382] Chr11:118359328..118372573 [GRCh37]
Chr11:11p15.3-q23.3
pathogenic
NC_000011.9:g.(?_58916346)_(64972349_?)dup duplication Leukocyte adhesion deficiency 3 [RCV003113394]|not provided [RCV003113393] Chr11:58916346..64972349 [GRCh37]
Chr11:11q12.1-13.1
uncertain significance|no classifications from unflagged records
GRCh37/hg19 11p13-q25(chr11:32799481-134938470)x3 copy number gain MISSED ABORTION [RCV002282973] Chr11:32799481..134938470 [GRCh37]
Chr11:11p13-q25
pathogenic
GRCh37/hg19 11p11.2-q12.2(chr11:51581311-54891247)x3 copy number gain See cases [RCV002286338] Chr11:51581311..54891247 [GRCh37]
Chr11:11p11.2-q12.2
pathogenic
NM_001004705.2(OR4D10):c.683A>C (p.Gln228Pro) single nucleotide variant not specified [RCV004332163] Chr11:59478112 [GRCh38]
Chr11:59245585 [GRCh37]
Chr11:11q12.1
uncertain significance
NM_001004705.2(OR4D10):c.560T>C (p.Leu187Pro) single nucleotide variant not specified [RCV004113697] Chr11:59477989 [GRCh38]
Chr11:59245462 [GRCh37]
Chr11:11q12.1
uncertain significance
NM_001004705.2(OR4D10):c.597G>T (p.Met199Ile) single nucleotide variant not specified [RCV004219307] Chr11:59478026 [GRCh38]
Chr11:59245499 [GRCh37]
Chr11:11q12.1
uncertain significance
NM_001004705.2(OR4D10):c.125A>G (p.Asn42Ser) single nucleotide variant not specified [RCV004133118] Chr11:59477554 [GRCh38]
Chr11:59245027 [GRCh37]
Chr11:11q12.1
uncertain significance
NM_001004705.2(OR4D10):c.500C>G (p.Pro167Arg) single nucleotide variant not specified [RCV004098828] Chr11:59477929 [GRCh38]
Chr11:59245402 [GRCh37]
Chr11:11q12.1
uncertain significance
NM_001004705.2(OR4D10):c.61C>T (p.Arg21Trp) single nucleotide variant not specified [RCV004209399] Chr11:59477490 [GRCh38]
Chr11:59244963 [GRCh37]
Chr11:11q12.1
likely benign
NM_001004705.2(OR4D10):c.512C>A (p.Pro171His) single nucleotide variant not specified [RCV004078661] Chr11:59477941 [GRCh38]
Chr11:59245414 [GRCh37]
Chr11:11q12.1
uncertain significance
NM_001004705.2(OR4D10):c.62G>A (p.Arg21Gln) single nucleotide variant not specified [RCV004143873] Chr11:59477491 [GRCh38]
Chr11:59244964 [GRCh37]
Chr11:11q12.1
likely benign
NM_001004705.2(OR4D10):c.190C>T (p.His64Tyr) single nucleotide variant not specified [RCV004178092] Chr11:59477619 [GRCh38]
Chr11:59245092 [GRCh37]
Chr11:11q12.1
uncertain significance
NM_001004705.2(OR4D10):c.43C>T (p.Leu15Phe) single nucleotide variant not specified [RCV004080078] Chr11:59477472 [GRCh38]
Chr11:59244945 [GRCh37]
Chr11:11q12.1
uncertain significance
NM_001004705.2(OR4D10):c.191A>G (p.His64Arg) single nucleotide variant not specified [RCV004180860] Chr11:59477620 [GRCh38]
Chr11:59245093 [GRCh37]
Chr11:11q12.1
likely benign
NM_001004705.2(OR4D10):c.170C>T (p.Thr57Met) single nucleotide variant not specified [RCV004075275] Chr11:59477599 [GRCh38]
Chr11:59245072 [GRCh37]
Chr11:11q12.1
uncertain significance
NM_001004705.2(OR4D10):c.301A>G (p.Met101Val) single nucleotide variant not specified [RCV004360734] Chr11:59477730 [GRCh38]
Chr11:59245203 [GRCh37]
Chr11:11q12.1
uncertain significance
NM_001004705.2(OR4D10):c.568A>G (p.Thr190Ala) single nucleotide variant not specified [RCV004351402] Chr11:59477997 [GRCh38]
Chr11:59245470 [GRCh37]
Chr11:11q12.1
uncertain significance
NM_001004705.2(OR4D10):c.620C>A (p.Thr207Asn) single nucleotide variant not specified [RCV004336993] Chr11:59478049 [GRCh38]
Chr11:59245522 [GRCh37]
Chr11:11q12.1
uncertain significance
NM_001004705.2(OR4D10):c.42C>T (p.Phe14=) single nucleotide variant not provided [RCV003395814] Chr11:59477471 [GRCh38]
Chr11:59244944 [GRCh37]
Chr11:11q12.1
likely benign
GRCh37/hg19 11q12.1-13.3(chr11:56895955-69295402)x3 copy number gain not specified [RCV003986944] Chr11:56895955..69295402 [GRCh37]
Chr11:11q12.1-13.3
likely pathogenic
GRCh37/hg19 11p11.12-q13.1(chr11:50398499-63924462)x3 copy number gain not specified [RCV003986918] Chr11:50398499..63924462 [GRCh37]
Chr11:11p11.12-q13.1
likely pathogenic
NM_001004705.2(OR4D10):c.316C>T (p.Leu106Phe) single nucleotide variant not specified [RCV004504371] Chr11:59477745 [GRCh38]
Chr11:59245218 [GRCh37]
Chr11:11q12.1
uncertain significance
NM_001004705.2(OR4D10):c.319A>C (p.Ile107Leu) single nucleotide variant not specified [RCV004504372] Chr11:59477748 [GRCh38]
Chr11:59245221 [GRCh37]
Chr11:11q12.1
likely benign
NM_001004705.2(OR4D10):c.31G>A (p.Glu11Lys) single nucleotide variant not specified [RCV004504373] Chr11:59477460 [GRCh38]
Chr11:59244933 [GRCh37]
Chr11:11q12.1
uncertain significance
NM_001004705.2(OR4D10):c.583C>T (p.Leu195Phe) single nucleotide variant not specified [RCV004504376] Chr11:59478012 [GRCh38]
Chr11:59245485 [GRCh37]
Chr11:11q12.1
uncertain significance
NM_001004705.2(OR4D10):c.716C>T (p.Thr239Ile) single nucleotide variant not specified [RCV004504377] Chr11:59478145 [GRCh38]
Chr11:59245618 [GRCh37]
Chr11:11q12.1
uncertain significance
NM_001004705.2(OR4D10):c.767A>G (p.Tyr256Cys) single nucleotide variant not specified [RCV004504378] Chr11:59478196 [GRCh38]
Chr11:59245669 [GRCh37]
Chr11:11q12.1
uncertain significance
NM_001004705.2(OR4D10):c.354G>A (p.Met118Ile) single nucleotide variant not specified [RCV004504374] Chr11:59477783 [GRCh38]
Chr11:59245256 [GRCh37]
Chr11:11q12.1
uncertain significance
NM_001004705.2(OR4D10):c.490C>T (p.Leu164Phe) single nucleotide variant not specified [RCV004504375] Chr11:59477919 [GRCh38]
Chr11:59245392 [GRCh37]
Chr11:11q12.1
uncertain significance
NM_001004705.2(OR4D10):c.800T>C (p.Met267Thr) single nucleotide variant not specified [RCV004504379] Chr11:59478229 [GRCh38]
Chr11:59245702 [GRCh37]
Chr11:11q12.1
likely benign
NM_001004705.2(OR4D10):c.853T>A (p.Leu285Met) single nucleotide variant not specified [RCV004504380] Chr11:59478282 [GRCh38]
Chr11:59245755 [GRCh37]
Chr11:11q12.1
likely benign
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:40
Count of miRNA genes:39
Interacting mature miRNAs:39
Transcripts:ENST00000530162
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage
High
Medium
Low 2 16 1 2 1 2 2 3 17
Below cutoff 78 55 63 29 86 24 149 63 80 19 279 50 5 31 75

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001004705 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC019093 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENST00000530162   ⟹   ENSP00000436424
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1159,473,315 - 59,479,361 (+)Ensembl
RefSeq Acc Id: NM_001004705   ⟹   NP_001004705
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381159,473,315 - 59,479,361 (+)NCBI
GRCh371159,244,903 - 59,245,838 (+)RGD
Build 361159,001,479 - 59,002,414 (+)NCBI Archive
Celera1156,606,185 - 56,607,120 (+)RGD
HuRef1155,592,733 - 55,593,668 (+)RGD
CHM1_11159,110,678 - 59,111,613 (+)NCBI
T2T-CHM13v2.01159,424,187 - 59,430,238 (+)NCBI
Sequence:
Protein Sequences
Ensembl Protein ENSP00000436424.1
RefSeq Acc Id: NP_001004705   ⟸   NM_001004705
- Sequence:
Ensembl Acc Id: ENSP00000436424   ⟸   ENST00000530162
Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8NGI6-F1-model_v2 AlphaFold Q8NGI6 1-311 view protein structure


Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:15173 AgrOrtholog
COSMIC OR4D10 COSMIC
Ensembl Genes ENSG00000254466 Ensembl, UniProtKB/Swiss-Prot
Ensembl Transcript ENST00000530162.2 UniProtKB/Swiss-Prot
Gene3D-CATH Rhodopsin 7-helix transmembrane proteins UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
GTEx ENSG00000254466 GTEx
HGNC ID HGNC:15173 ENTREZGENE
Human Proteome Map OR4D10 Human Proteome Map
InterPro GPCR_Rhodpsn UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GPCR_Rhodpsn_7TM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Olfact_rcpt UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Olfactory_Receptors UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report hsa:390197 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
NCBI Gene OR4D10 ENTREZGENE
PANTHER OLFACTORY RECEPTOR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  OLFACTORY RECEPTOR 4D10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam 7tm_4 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB PA32268 PharmGKB
PRINTS GPCRRHODOPSN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  OLFACTORYR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE G_PROTEIN_RECEP_F1_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  G_PROTEIN_RECEP_F1_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP Family A G protein-coupled receptor-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A126GVJ1_HUMAN UniProtKB/TrEMBL
  OR4DA_HUMAN UniProtKB/Swiss-Prot
UniProt Secondary B2RNH6 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-12-15 OR4D10  olfactory receptor family 4 subfamily D member 10  OR4D10  olfactory receptor, family 4, subfamily D, member 10  Symbol and/or name change 5135510 APPROVED