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Gene: PGLYRP2 (peptidoglycan recognition protein 2) Homo sapiens

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Symbol:

PGLYRP2

Name:

peptidoglycan recognition protein 2

RGD ID:

1346354

HGNC Page

HGNC:30013

Description:

Enables N-acetylmuramoyl-L-alanine amidase activity; peptidoglycan binding activity; and peptidoglycan immune receptor activity. Involved in defense response to Gram-positive bacterium and detection of bacterium. Located in extracellular exosome.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

HMFT0141; N-acetylmuramoyl-L-alanine amidase; peptidoglycan recognition protein L; peptidoglycan recognition protein long; peptidoglycan recognition protein-like; PGLYRPL; PGRP-L; PGRPL; tagL; tagL-alpha; tagl-beta; TAGL-like

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Mus musculus (house mouse):	Pglyrp2 (peptidoglycan recognition protein 2)	HGNC	EggNOG, Ensembl, HGNC, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Rattus norvegicus (Norway rat):	Pglyrp2 (peptidoglycan recognition protein 2)	RGD	RGD
Chinchilla lanigera (long-tailed chinchilla):	Pglyrp2 (peptidoglycan recognition protein 2)	NCBI	Ortholog
Pan paniscus (bonobo/pygmy chimpanzee):	PGLYRP2 (peptidoglycan recognition protein 2)	NCBI	Ortholog
Canis lupus familiaris (dog):	PGLYRP2 (peptidoglycan recognition protein 2)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Treefam
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Pglyrp2 (peptidoglycan recognition protein 2)	NCBI	Ortholog
Sus scrofa (pig):	PGLYRP2 (peptidoglycan recognition protein 2)	HGNC	EggNOG, Ensembl, Inparanoid, NCBI, OMA, OrthoDB, Panther, Treefam
Chlorocebus sabaeus (green monkey):	PGLYRP2 (peptidoglycan recognition protein 2)	NCBI	Ortholog
Heterocephalus glaber (naked mole-rat):	Pglyrp2 (peptidoglycan recognition protein 2)	NCBI	Ortholog
Alliance orthologs ³
Rattus norvegicus (Norway rat):	Pglyrp2 (peptidoglycan recognition protein 2)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Rattus norvegicus (Norway rat):	Pglyrp2 (peptidoglycan recognition protein 2)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Pglyrp2 (peptidoglycan recognition protein 2)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	pglyrp2 (peptidoglycan recognition protein 2)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid\|ZFIN)
Danio rerio (zebrafish):	pglyrp2 (peptidoglycan recognition protein 2)	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid\|ZFIN)
Danio rerio (zebrafish):	pglyrp6 (peptidoglycan recognition protein 6)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	PGRP-LB	Alliance	DIOPT (Ensembl Compara\|PANTHER\|PhylomeDB)
Drosophila melanogaster (fruit fly):	PGRP-LF	Alliance	DIOPT (Ensembl Compara\|PANTHER\|PhylomeDB)
Drosophila melanogaster (fruit fly):	PGRP-SA	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PANTHER)
Drosophila melanogaster (fruit fly):	PGRP-LA	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PANTHER)
Drosophila melanogaster (fruit fly):	PGRP-LD	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PANTHER)
Xenopus tropicalis (tropical clawed frog):	pglyrp2	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	pglyrp2	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER)
Xenopus laevis (African clawed frog):	pglyrp2.L	Alliance	DIOPT (Xenbase)

Allele / Splice:

See ClinVar data

Latest Assembly:

GRCh38 - Human Genome Assembly GRCh38

Position:

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	19	15,468,645 - 15,479,501 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	19	15,468,642 - 15,498,956 (-)	Ensembl			hg38	GRCh38
GRCh37	19	15,579,456 - 15,590,312 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	19	15,440,456 - 15,451,315 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	19	15,440,462 - 15,451,312	NCBI
Celera	19	15,476,268 - 15,487,143 (-)	NCBI		Celera
Cytogenetic Map	19	p13.12	NCBI
HuRef	19	15,147,207 - 15,158,066 (-)	NCBI		HuRef
CHM1_1	19	15,579,067 - 15,589,927 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	19	15,593,641 - 15,604,523 (-)	NCBI		T2T-CHM13v2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(1->4)-beta-D-glucan (ISO)

1,2-dimethylhydrazine (ISO)

17beta-estradiol (EXP,ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2-hydroxypropanoic acid (EXP)

4,4'-sulfonyldiphenol (ISO)

aflatoxin B1 (EXP,ISO)

Aflatoxin B2 alpha (EXP)

alpha-Zearalanol (ISO)

arsane (EXP)

arsenic atom (EXP)

benzo[a]pyrene (EXP,ISO)

benzo[e]pyrene (EXP)

Benzo[k]fluoranthene (ISO)

bisphenol A (ISO)

bosentan (EXP)

buta-1,3-diene (ISO)

cadmium dichloride (EXP)

chenodeoxycholic acid (EXP)

chromium(6+) (ISO)

copper atom (EXP)

copper(0) (EXP)

cyclosporin A (EXP,ISO)

deoxycholic acid (EXP)

diazinon (EXP)

doxorubicin (ISO)

endosulfan (EXP)

gentamycin (ISO)

glycochenodeoxycholic acid (EXP)

glycocholic acid (EXP)

glycodeoxycholic acid (EXP)

inulin (ISO)

Lasiocarpine (EXP)

lipopolysaccharide (EXP)

methapyrilene (EXP)

nickel atom (EXP)

O-methyleugenol (EXP)

okadaic acid (EXP)

paracetamol (EXP,ISO)

perfluorononanoic acid (EXP)

perfluorooctane-1-sulfonic acid (EXP,ISO)

phenobarbital (ISO)

pirinixic acid (ISO)

potassium dichromate (ISO)

propiconazole (ISO)

rac-lactic acid (EXP)

rotenone (ISO)

S-(1,2-dichlorovinyl)-L-cysteine (EXP)

silicon dioxide (ISO)

sodium arsenite (EXP)

tetrachloromethane (ISO)

thioacetamide (ISO)

titanium dioxide (ISO)

trichloroethene (ISO)

triclosan (EXP)

triptonide (ISO)

valproic acid (EXP,ISO)

zinc atom (EXP)

zinc(0) (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

biological process involved in interaction with host (IEA)

defense response to bacterium (IBA)

defense response to Gram-positive bacterium (IDA,IEA)

detection of bacterium (IDA,IEA)

immune response (IBA)

immune system process (IEA)

innate immune response (NAS)

negative regulation of natural killer cell differentiation involved in immune response (IEA)

negative regulation of type II interferon production (IEA)

peptide amidation (NAS)

peptidoglycan catabolic process (IEA)

regulation of inflammatory response (IEA)

Cellular Component

extracellular exosome (HDA)

extracellular region (IEA,TAS)

membrane (IEA,NAS)

Molecular Function

hydrolase activity (IEA)

metal ion binding (IEA)

molecular condensate scaffold activity (IDA)

N-acetylmuramoyl-L-alanine amidase activity (IDA,IEA,TAS)

peptidoglycan binding (IDA,IEA)

peptidoglycan immune receptor activity (IDA,IEA)

protein binding (IPI)

zinc ion binding (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:7663175	PMID:11441184	PMID:11461926	PMID:11752456	PMID:12477932	PMID:12669421	PMID:12754519	PMID:12975309	PMID:14506276	PMID:14702039	PMID:15221005	PMID:15340057
PMID:15340161	PMID:16054449	PMID:16239516	PMID:16335952	PMID:16344560	PMID:16714290	PMID:17975119	PMID:18649358	PMID:19023099	PMID:20237496	PMID:21873635	PMID:23376485
PMID:23533145	PMID:24838182	PMID:25544563	PMID:26039076	PMID:29914927	PMID:31479523	PMID:32296183	PMID:32967043	PMID:33427621	PMID:34461924	PMID:35218888

Genomics

Comparative Map Data

PGLYRP2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	19	15,468,645 - 15,479,501 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	19	15,468,642 - 15,498,956 (-)	Ensembl			hg38	GRCh38
GRCh37	19	15,579,456 - 15,590,312 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	19	15,440,456 - 15,451,315 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	19	15,440,462 - 15,451,312	NCBI
Celera	19	15,476,268 - 15,487,143 (-)	NCBI		Celera
Cytogenetic Map	19	p13.12	NCBI
HuRef	19	15,147,207 - 15,158,066 (-)	NCBI		HuRef
CHM1_1	19	15,579,067 - 15,589,927 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	19	15,593,641 - 15,604,523 (-)	NCBI		T2T-CHM13v2.0

Pglyrp2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	17	32,631,433 - 32,643,157 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	17	32,631,433 - 32,643,141 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	17	32,412,459 - 32,424,219 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	17	32,412,459 - 32,424,167 (-)	Ensembl			mm10	GRCm38
MGSCv37	17	32,550,045 - 32,557,920 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	17	32,550,306 - 32,561,112 (-)	NCBI		MGSCv36	mm8
Celera	17	33,325,622 - 33,333,482 (-)	NCBI		Celera
Cytogenetic Map	17	B1	NCBI
cM Map	17	17.56	NCBI

Pglyrp2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	7	12,069,414 - 12,082,437 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	7	12,069,414 - 12,078,369 (-)	Ensembl				GRCr8
mRatBN7.2	7	11,418,674 - 11,432,162 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	7	11,418,880 - 11,427,773 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	7	14,237,304 - 14,246,286 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	7	16,114,726 - 16,123,712 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	7	13,986,312 - 13,995,267 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	7	14,426,481 - 14,435,987 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	7	14,429,701 - 14,435,967 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	7	14,580,379 - 14,588,764 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	7	12,995,858 - 12,996,949 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	7	9,530,143 - 9,537,285 (-)	NCBI		Celera
Cytogenetic Map	7	q11	NCBI

Pglyrp2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955495	7,785,193 - 7,796,210 (+)	Ensembl
ChiLan1.0	NW_004955495	7,785,398 - 7,792,158 (+)	NCBI	ChiLan1.0	ChiLan1.0

PGLYRP2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	20	20,378,029 - 20,396,483 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	19	19,380,830 - 19,399,218 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	19	14,999,893 - 15,012,376 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	19	15,986,083 - 15,997,726 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	19	15,986,090 - 15,997,726 (-)	Ensembl			panPan2	panpan1.1

PGLYRP2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	20	46,724,906 - 46,730,227 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	20	46,726,224 - 46,730,321 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	20	46,572,665 - 46,577,974 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	20	47,211,739 - 47,217,048 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	20	47,210,950 - 47,217,128 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	20	46,446,615 - 46,451,923 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	20	46,863,271 - 46,868,579 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	20	47,136,764 - 47,142,073 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Pglyrp2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405118	205,489,000 - 205,495,525 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936596	5,038,452 - 5,044,569 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936596	5,038,452 - 5,043,172 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

PGLYRP2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	2	62,134,533 - 62,140,184 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	2	62,135,578 - 62,140,180 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	2	61,567,649 - 61,572,250 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

PGLYRP2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	6	14,072,310 - 14,084,014 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	6	14,072,423 - 14,082,798 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666074	5,424,409 - 5,435,504 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Pglyrp2
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624901	2,554,048 - 2,561,826 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624901	2,554,303 - 2,562,436 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Variants

Variants in PGLYRP2
56 total Variants

Clinical Variants

Name	Type	Condition(s)	Position(s)	Clinical significance
GRCh38/hg38 19p13.12-q11(chr19:13974677-27839676)x3	copy number gain	See cases [RCV000052912]	Chr19:13974677..27839676 [GRCh38] Chr19:14085489..28330584 [GRCh37] Chr19:13946489..33022424 [NCBI36] Chr19:19p13.12-q11	pathogenic
GRCh38/hg38 19p13.12(chr19:15227306-15496644)x3	copy number gain	See cases [RCV000054146]	Chr19:15227306..15496644 [GRCh38] Chr19:15338117..15607455 [GRCh37] Chr19:15199117..15468455 [NCBI36] Chr19:19p13.12	uncertain significance
NM_052890.3(PGLYRP2):c.606C>T (p.Ser202=)	single nucleotide variant	Malignant melanoma [RCV000071966]	Chr19:15476064 [GRCh38] Chr19:15586875 [GRCh37] Chr19:15447875 [NCBI36] Chr19:19p13.12	not provided
GRCh38/hg38 19p13.2-q13.31(chr19:11227942-44626354)x3	copy number gain	See cases [RCV000133888]	Chr19:11227942..44626354 [GRCh38] Chr19:11338618..45129651 [GRCh37] Chr19:11199618..49821491 [NCBI36] Chr19:19p13.2-q13.31	pathogenic
GRCh38/hg38 19p13.12-13.11(chr19:14154962-16914313)x1	copy number loss	See cases [RCV000134176]	Chr19:14154962..16914313 [GRCh38] Chr19:14265774..17025123 [GRCh37] Chr19:14126774..16886123 [NCBI36] Chr19:19p13.12-13.11	pathogenic
GRCh38/hg38 19p13.12-12(chr19:15133594-24193591)x3	copy number gain	See cases [RCV000136696]	Chr19:15133594..24193591 [GRCh38] Chr19:15244405..24376393 [GRCh37] Chr19:15105405..24168233 [NCBI36] Chr19:19p13.12-12	pathogenic\|likely pathogenic
GRCh37/hg19 19p13.12-13.11(chr19:14124666-16431349)x1	copy number loss	See cases [RCV000448818]	Chr19:14124666..16431349 [GRCh37] Chr19:19p13.12-13.11	pathogenic
GRCh37/hg19 19p13.12-13.11(chr19:14883158-16788770)x1	copy number loss	See cases [RCV000511367]	Chr19:14883158..16788770 [GRCh37] Chr19:19p13.12-13.11	pathogenic
NM_052890.4(PGLYRP2):c.325G>T (p.Gly109Trp)	single nucleotide variant	not specified [RCV004283964]	Chr19:15476345 [GRCh38] Chr19:15587156 [GRCh37] Chr19:19p13.12	uncertain significance
GRCh37/hg19 19p13.3-q13.43(chr19:260912-58956888)x3	copy number gain	See cases [RCV000511289]	Chr19:260912..58956888 [GRCh37] Chr19:19p13.3-q13.43	pathogenic\|uncertain significance
GRCh37/hg19 19p13.3-q13.43(chr19:260912-58956888)	copy number gain	See cases [RCV000512296]	Chr19:260912..58956888 [GRCh37] Chr19:19p13.3-q13.43	pathogenic
GRCh37/hg19 19p13.3-q13.43(chr19:68029-59110290)x3	copy number gain	not provided [RCV000752439]	Chr19:68029..59110290 [GRCh37] Chr19:19p13.3-q13.43	pathogenic
GRCh37/hg19 19p13.3-q13.43(chr19:260912-59097160)x3	copy number gain	not provided [RCV000752444]	Chr19:260912..59097160 [GRCh37] Chr19:19p13.3-q13.43	pathogenic
GRCh37/hg19 19p13.12(chr19:15246479-15683078)x3	copy number gain	not provided [RCV000740052]	Chr19:15246479..15683078 [GRCh37] Chr19:19p13.12	benign
GRCh37/hg19 19p13.12(chr19:15278099-15710360)x3	copy number gain	not provided [RCV000740056]	Chr19:15278099..15710360 [GRCh37] Chr19:19p13.12	benign
GRCh37/hg19 19p13.12(chr19:15338105-15668026)x1	copy number loss	not provided [RCV000847812]	Chr19:15338105..15668026 [GRCh37] Chr19:19p13.12	uncertain significance
GRCh37/hg19 19p13.12(chr19:14368330-15712368)x1	copy number loss	not provided [RCV001007034]	Chr19:14368330..15712368 [GRCh37] Chr19:19p13.12	pathogenic
NM_052890.4(PGLYRP2):c.493G>A (p.Val165Ile)	single nucleotide variant	not specified [RCV004315805]	Chr19:15476177 [GRCh38] Chr19:15586988 [GRCh37] Chr19:19p13.12	uncertain significance
NM_052890.4(PGLYRP2):c.701G>T (p.Gly234Val)	single nucleotide variant	not provided [RCV000894148]	Chr19:15475969 [GRCh38] Chr19:15586780 [GRCh37] Chr19:19p13.12	benign
GRCh37/hg19 19p13.12-12(chr19:14286624-20956753)x3	copy number gain	not provided [RCV001259370]	Chr19:14286624..20956753 [GRCh37] Chr19:19p13.12-12	pathogenic
GRCh37/hg19 19p13.12(chr19:15184922-15582812)	copy number gain	not specified [RCV002052676]	Chr19:15184922..15582812 [GRCh37] Chr19:19p13.12	uncertain significance
GRCh37/hg19 19p13.12-13.11(chr19:14124666-16431349)	copy number loss	not specified [RCV002052675]	Chr19:14124666..16431349 [GRCh37] Chr19:19p13.12-13.11	pathogenic
NC_000019.9:g.(?_14847048)_(17394124_?)del	deletion	not provided [RCV003116664]	Chr19:14847048..17394124 [GRCh37] Chr19:19p13.12-13.11	uncertain significance
NM_052890.4(PGLYRP2):c.698G>C (p.Arg233Pro)	single nucleotide variant	not specified [RCV004139333]	Chr19:15475972 [GRCh38] Chr19:15586783 [GRCh37] Chr19:19p13.12	uncertain significance
NM_052890.4(PGLYRP2):c.1492A>G (p.Thr498Ala)	single nucleotide variant	not specified [RCV004204030]	Chr19:15469781 [GRCh38] Chr19:15580592 [GRCh37] Chr19:19p13.12	uncertain significance
NM_052890.4(PGLYRP2):c.1447G>A (p.Val483Met)	single nucleotide variant	not specified [RCV004169888]	Chr19:15469826 [GRCh38] Chr19:15580637 [GRCh37] Chr19:19p13.12	uncertain significance
NM_052890.4(PGLYRP2):c.1678A>G (p.Arg560Gly)	single nucleotide variant	not specified [RCV004104511]	Chr19:15468716 [GRCh38] Chr19:15579527 [GRCh37] Chr19:19p13.12	uncertain significance
NM_052890.4(PGLYRP2):c.877C>T (p.Arg293Trp)	single nucleotide variant	not specified [RCV004187876]	Chr19:15475793 [GRCh38] Chr19:15586604 [GRCh37] Chr19:19p13.12	uncertain significance
NM_052890.4(PGLYRP2):c.1295T>G (p.Met432Arg)	single nucleotide variant	not specified [RCV004176537]	Chr19:15471938 [GRCh38] Chr19:15582749 [GRCh37] Chr19:19p13.12	uncertain significance
NM_052890.4(PGLYRP2):c.595G>A (p.Val199Ile)	single nucleotide variant	not specified [RCV004201339]	Chr19:15476075 [GRCh38] Chr19:15586886 [GRCh37] Chr19:19p13.12	uncertain significance
NM_052890.4(PGLYRP2):c.674G>A (p.Gly225Glu)	single nucleotide variant	not specified [RCV004085422]	Chr19:15475996 [GRCh38] Chr19:15586807 [GRCh37] Chr19:19p13.12	uncertain significance
NM_052890.4(PGLYRP2):c.1400G>A (p.Gly467Asp)	single nucleotide variant	not specified [RCV004159815]	Chr19:15469873 [GRCh38] Chr19:15580684 [GRCh37] Chr19:19p13.12	uncertain significance
NM_052890.4(PGLYRP2):c.1668T>G (p.Ser556Arg)	single nucleotide variant	not specified [RCV004091112]	Chr19:15468726 [GRCh38] Chr19:15579537 [GRCh37] Chr19:19p13.12	likely benign
NM_052890.4(PGLYRP2):c.1199T>C (p.Leu400Pro)	single nucleotide variant	not specified [RCV004092249]	Chr19:15472034 [GRCh38] Chr19:15582845 [GRCh37] Chr19:19p13.12	uncertain significance
NM_052890.4(PGLYRP2):c.304G>A (p.Val102Ile)	single nucleotide variant	not specified [RCV004077013]	Chr19:15476366 [GRCh38] Chr19:15587177 [GRCh37] Chr19:19p13.12	uncertain significance
GRCh38/hg38 19p13.12-13.11(chr19:15014099-16261691)	copy number loss	Chromosome 19p13.13 deletion syndrome [RCV003223562]	Chr19:15014099..16261691 [GRCh38] Chr19:19p13.12-13.11	pathogenic\|uncertain significance
NM_052890.4(PGLYRP2):c.404G>A (p.Arg135His)	single nucleotide variant	not specified [RCV004257583]	Chr19:15476266 [GRCh38] Chr19:15587077 [GRCh37] Chr19:19p13.12	likely benign
NM_052890.4(PGLYRP2):c.325G>C (p.Gly109Arg)	single nucleotide variant	not specified [RCV004278778]	Chr19:15476345 [GRCh38] Chr19:15587156 [GRCh37] Chr19:19p13.12	uncertain significance
NM_052890.4(PGLYRP2):c.1025T>G (p.Leu342Arg)	single nucleotide variant	not specified [RCV004354575]	Chr19:15475645 [GRCh38] Chr19:15586456 [GRCh37] Chr19:19p13.12	uncertain significance
GRCh37/hg19 19p13.12-13.11(chr19:14888106-17360864)x3	copy number gain	not provided [RCV003485195]	Chr19:14888106..17360864 [GRCh37] Chr19:19p13.12-13.11	uncertain significance
GRCh37/hg19 19p13.13-13.11(chr19:13970692-18139376)x3	copy number gain	not specified [RCV003986122]	Chr19:13970692..18139376 [GRCh37] Chr19:19p13.13-13.11	uncertain significance
GRCh37/hg19 19p13.12(chr19:15263384-15683826)x3	copy number gain	not specified [RCV003986112]	Chr19:15263384..15683826 [GRCh37] Chr19:19p13.12	uncertain significance
NM_052890.4(PGLYRP2):c.31G>A (p.Gly11Arg)	single nucleotide variant	not specified [RCV004498685]	Chr19:15479341 [GRCh38] Chr19:15590152 [GRCh37] Chr19:19p13.12	uncertain significance
NM_052890.4(PGLYRP2):c.1573C>A (p.Leu525Met)	single nucleotide variant	not specified [RCV004498684]	Chr19:15469700 [GRCh38] Chr19:15580511 [GRCh37] Chr19:19p13.12	uncertain significance
NM_052890.4(PGLYRP2):c.956G>A (p.Arg319Gln)	single nucleotide variant	not specified [RCV004498689]	Chr19:15475714 [GRCh38] Chr19:15586525 [GRCh37] Chr19:19p13.12	uncertain significance
NM_052890.4(PGLYRP2):c.1055A>G (p.Gln352Arg)	single nucleotide variant	not specified [RCV004498683]	Chr19:15475615 [GRCh38] Chr19:15586426 [GRCh37] Chr19:19p13.12	uncertain significance
NM_052890.4(PGLYRP2):c.430A>G (p.Ser144Gly)	single nucleotide variant	not specified [RCV004498686]	Chr19:15476240 [GRCh38] Chr19:15587051 [GRCh37] Chr19:19p13.12	uncertain significance
NM_052890.4(PGLYRP2):c.439G>T (p.Ala147Ser)	single nucleotide variant	not specified [RCV004498687]	Chr19:15476231 [GRCh38] Chr19:15587042 [GRCh37] Chr19:19p13.12	uncertain significance
NM_052890.4(PGLYRP2):c.767G>A (p.Arg256Gln)	single nucleotide variant	not specified [RCV004659927]	Chr19:15475903 [GRCh38] Chr19:15586714 [GRCh37] Chr19:19p13.12	uncertain significance
NM_052890.4(PGLYRP2):c.1237T>C (p.Tyr413His)	single nucleotide variant	not specified [RCV004659928]	Chr19:15471996 [GRCh38] Chr19:15582807 [GRCh37] Chr19:19p13.12	uncertain significance
NM_052890.4(PGLYRP2):c.403C>A (p.Arg135Ser)	single nucleotide variant	not specified [RCV004655823]	Chr19:15476267 [GRCh38] Chr19:15587078 [GRCh37] Chr19:19p13.12	uncertain significance
NM_052890.4(PGLYRP2):c.1333A>G (p.Ile445Val)	single nucleotide variant	not specified [RCV004836831]	Chr19:15471900 [GRCh38] Chr19:15582711 [GRCh37] Chr19:19p13.12	uncertain significance
GRCh37/hg19 19p13.12(chr19:14508139-15600034)x3	copy number gain	not provided [RCV004819642]	Chr19:14508139..15600034 [GRCh37] Chr19:19p13.12	uncertain significance
NM_052890.4(PGLYRP2):c.1642A>G (p.Thr548Ala)	single nucleotide variant	not specified [RCV004836834]	Chr19:15468752 [GRCh38] Chr19:15579563 [GRCh37] Chr19:19p13.12	uncertain significance
NM_052890.4(PGLYRP2):c.959G>A (p.Arg320Gln)	single nucleotide variant	not specified [RCV004836833]	Chr19:15475711 [GRCh38] Chr19:15586522 [GRCh37] Chr19:19p13.12	uncertain significance
NM_052890.4(PGLYRP2):c.944G>C (p.Arg315Pro)	single nucleotide variant	not specified [RCV004836832]	Chr19:15475726 [GRCh38] Chr19:15586537 [GRCh37] Chr19:19p13.12	uncertain significance
NM_052890.4(PGLYRP2):c.1301G>T (p.Arg434Leu)	single nucleotide variant	not specified [RCV004836830]	Chr19:15471932 [GRCh38] Chr19:15582743 [GRCh37] Chr19:19p13.12	uncertain significance
NM_052890.4(PGLYRP2):c.403C>T (p.Arg135Cys)	single nucleotide variant	not specified [RCV005384176]	Chr19:15476267 [GRCh38] Chr19:15587078 [GRCh37] Chr19:19p13.12	uncertain significance
NM_052890.4(PGLYRP2):c.832G>A (p.Asp278Asn)	single nucleotide variant	not specified [RCV005384177]	Chr19:15475838 [GRCh38] Chr19:15586649 [GRCh37] Chr19:19p13.12	uncertain significance
NM_052890.4(PGLYRP2):c.488C>T (p.Pro163Leu)	single nucleotide variant	not specified [RCV005397802]	Chr19:15476182 [GRCh38] Chr19:15586993 [GRCh37] Chr19:19p13.12	uncertain significance
NM_052890.4(PGLYRP2):c.557G>A (p.Gly186Glu)	single nucleotide variant	not specified [RCV005384173]	Chr19:15476113 [GRCh38] Chr19:15586924 [GRCh37] Chr19:19p13.12	uncertain significance
NM_052890.4(PGLYRP2):c.752A>T (p.Gln251Leu)	single nucleotide variant	not specified [RCV005397803]	Chr19:15475918 [GRCh38] Chr19:15586729 [GRCh37] Chr19:19p13.12	uncertain significance
NM_052890.4(PGLYRP2):c.590C>A (p.Pro197Gln)	single nucleotide variant	not specified [RCV005384175]	Chr19:15476080 [GRCh38] Chr19:15586891 [GRCh37] Chr19:19p13.12	uncertain significance
NM_052890.4(PGLYRP2):c.1240G>T (p.Val414Leu)	single nucleotide variant	not specified [RCV005384172]	Chr19:15471993 [GRCh38] Chr19:15582804 [GRCh37] Chr19:19p13.12	uncertain significance

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	1195
Count of miRNA genes:	723
Interacting mature miRNAs:	814
Transcripts:	ENST00000292609, ENST00000340880, ENST00000594637, ENST00000601792
Prediction methods:	Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCh38)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
616504767	GWAS1901350_H	level of N-acetylmuramoyl-L-alanine amidase in blood serum QTL GWAS1901350 (human)		3e-35	level of N-acetylmuramoyl-L-alanine amidase in blood serum		19	15477433	15477434	Human
407205700	GWAS854676_H	blood protein measurement QTL GWAS854676 (human)		1e-106	blood protein measurement		19	15469479	15469480	Human
628368501	GWAS2289345_H	stromal interaction molecule 1 measurement QTL GWAS2289345 (human)		8e-24	stromal interaction molecule 1 measurement		19	15472052	15472053	Human
628368759	GWAS2289603_H	level of S-arrestin in blood serum QTL GWAS2289603 (human)		2e-33	level of S-arrestin in blood serum		19	15476374	15476375	Human
597122207	GWAS1218281_H	blood protein measurement QTL GWAS1218281 (human)		1e-21	blood protein measurement		19	15469479	15469480	Human
616376244	GWAS1856486_H	obsolete_blood protein measurement QTL GWAS1856486 (human)		4e-18	obsolete_blood protein measurement		19	15469847	15469848	Human
616482484	GWAS1879067_H	blood protein amount QTL GWAS1879067 (human)		1e-21	blood protein amount		19	15469479	15469480	Human
616480175	GWAS1876758_H	blood protein amount QTL GWAS1876758 (human)		2e-173	blood protein amount		19	15471674	15471675	Human
628584038	GWAS2492267_H	glycoprotein hormone alpha-2 measurement QTL GWAS2492267 (human)		3e-82	glycoprotein hormone alpha-2 measurement		19	15472751	15472752	Human
407202131	GWAS851107_H	blood protein measurement QTL GWAS851107 (human)		4e-18	blood protein measurement		19	15469847	15469848	Human
597121933	GWAS1218007_H	blood protein measurement QTL GWAS1218007 (human)		7e-106	blood protein measurement		19	15469479	15469480	Human
616482468	GWAS1879051_H	blood protein amount QTL GWAS1879051 (human)		4e-18	blood protein amount		19	15469847	15469848	Human
597236102	GWAS1332176_H	blood protein measurement QTL GWAS1332176 (human)		2e-173	blood protein measurement		19	15471674	15471675	Human
406951780	GWAS600756_H	protein LDOC1 measurement QTL GWAS600756 (human)		3e-97	protein LDOC1 measurement		19	15472052	15472053	Human
597301948	GWAS1398022_H	adrenomedullin measurement QTL GWAS1398022 (human)		2e-26	adrenomedullin measurement		19	15476534	15476535	Human
597172159	GWAS1268233_H	protein measurement QTL GWAS1268233 (human)		6e-195	protein measurement		19	15475134	15475135	Human
406973801	GWAS622777_H	macrophage scavenger receptor types I and II measurement QTL GWAS622777 (human)		2e-127	macrophage scavenger receptor types I and II measurement		19	15469847	15469848	Human
406892392	GWAS541368_H	protein LDOC1 measurement QTL GWAS541368 (human)		6e-76	protein LDOC1 measurement		19	15472052	15472053	Human
597299894	GWAS1395968_H	guanylyl cyclase-activating protein 1 measurement QTL GWAS1395968 (human)		2e-55	guanylyl cyclase-activating protein 1 measurement		19	15475861	15475862	Human
597301674	GWAS1397748_H	submaxillary gland androgen-regulated protein 3A measurement QTL GWAS1397748 (human)		1e-84	submaxillary gland androgen-regulated protein 3A measurement		19	15469479	15469480	Human
407214965	GWAS863941_H	blood protein measurement QTL GWAS863941 (human)		2e-173	blood protein measurement		19	15471674	15471675	Human
628582722	GWAS2490951_H	submaxillary gland androgen-regulated protein 3A measurement QTL GWAS2490951 (human)		1e-84	submaxillary gland androgen-regulated protein 3A measurement		19	15469479	15469480	Human
617133566	GWAS2151065_H	level of N-acetylmuramoyl-L-alanine amidase in blood serum QTL GWAS2151065 (human)		3e-35	level of N-acetylmuramoyl-L-alanine amidase in blood serum		19	15477433	15477434	Human
597119405	GWAS1215479_H	blood protein measurement QTL GWAS1215479 (human)		4e-14	blood protein measurement		19	15469847	15469848	Human
628572490	GWAS2480719_H	adrenomedullin measurement QTL GWAS2480719 (human)		2e-26	kidney adrenomedullin amount (VT:0010754)	kidney adrenomedullin level (CMO:0002916)	19	15476534	15476535	Human
1298476	BP3_H	Blood pressure QTL 3 (human)	2.4		Blood pressure	systolic	19	1	16075902	Human
616377341	GWAS1857583_H	obsolete_blood protein measurement QTL GWAS1857583 (human)		2e-173	obsolete_blood protein measurement		19	15471674	15471675	Human
616482555	GWAS1879138_H	blood protein amount QTL GWAS1879138 (human)		7e-106	blood protein amount		19	15469479	15469480	Human
597172446	GWAS1268520_H	protein measurement QTL GWAS1268520 (human)		1e-27	protein measurement		19	15469847	15469848	Human
628926267	GWAS2834496_H	level of S-arrestin in blood serum QTL GWAS2834496 (human)		2e-33	level of S-arrestin in blood serum		19	15476374	15476375	Human
597299409	GWAS1395483_H	glycoprotein hormone alpha-2 measurement QTL GWAS1395483 (human)		3e-82	glycoprotein hormone alpha-2 measurement		19	15472751	15472752	Human
1298499	UAE1_H	Urinary albumin excretion QTL 1 (human)	2.73	0.0009	Urinary albumin excretion	urine albumin:creatinine ratio (ACR)	19	1	16075902	Human
1300034	BP50_H	Blood pressure QTL 50 (human)	2.1	0.00094	Blood pressure	systolic	19	11089463	37089463	Human
406968592	GWAS617568_H	protein measurement QTL GWAS617568 (human)		6e-195	protein measurement		19	15475134	15475135	Human
628869672	GWAS2777901_H	macrophage scavenger receptor types I and II level QTL GWAS2777901 (human)		2e-127	macrophage scavenger receptor types I and II level		19	15469847	15469848	Human
597121487	GWAS1217561_H	blood protein measurement QTL GWAS1217561 (human)		1e-106	blood protein measurement		19	15469479	15469480	Human
617133224	GWAS2150723_H	level of N-acetylmuramoyl-L-alanine amidase in blood serum QTL GWAS2150723 (human)		8e-20	level of N-acetylmuramoyl-L-alanine amidase in blood serum		19	15477469	15477470	Human
628807711	GWAS2715940_H	protein measurement QTL GWAS2715940 (human)		5e-461	protein amount (VT:0010120)		19	15472052	15472053	Human
617199013	GWAS2179453_H	level of N-acetylmuramoyl-L-alanine amidase in blood QTL GWAS2179453 (human)		4e-26	level of N-acetylmuramoyl-L-alanine amidase in blood		19	15470558	15470559	Human
616480717	GWAS1877300_H	blood protein amount QTL GWAS1877300 (human)		1e-106	blood protein amount		19	15469479	15469480	Human
597169899	GWAS1265973_H	protein measurement QTL GWAS1265973 (human)		5e-461	protein measurement		19	15472052	15472053	Human
628765709	GWAS2673938_H	blood protein amount QTL GWAS2673938 (human)		4e-14	blood protein amount		19	15469847	15469848	Human
407242302	GWAS891278_H	blood protein measurement QTL GWAS891278 (human)		7e-106	blood protein measurement		19	15469479	15469480	Human
628765443	GWAS2673672_H	blood protein amount QTL GWAS2673672 (human)		1e-21	blood protein amount		19	15469479	15469480	Human
628769280	GWAS2677509_H	blood protein amount QTL GWAS2677509 (human)		7e-106	blood protein amount		19	15469479	15469480	Human
2314591	INSUL4_H	Insulin level QTL 4 (human)	3.8	0.000038	Insulin level	fasting	19	1	16075902	Human
628807933	GWAS2716162_H	protein measurement QTL GWAS2716162 (human)		6e-195	protein amount (VT:0010120)		19	15475134	15475135	Human
406892490	GWAS541466_H	glycoprotein hormone alpha-2 measurement QTL GWAS541466 (human)		3e-82	glycoprotein hormone alpha-2 measurement		19	15472751	15472752	Human
617133892	GWAS2151391_H	level of N-acetylmuramoyl-L-alanine amidase in blood serum QTL GWAS2151391 (human)		4e-26	level of N-acetylmuramoyl-L-alanine amidase in blood serum		19	15470558	15470559	Human
616374323	GWAS1854565_H	obsolete_blood protein measurement QTL GWAS1854565 (human)		1e-106	obsolete_blood protein measurement		19	15469479	15469480	Human
616374066	GWAS1854308_H	obsolete_blood protein measurement QTL GWAS1854308 (human)		1e-21	obsolete_blood protein measurement		19	15469479	15469480	Human
628766186	GWAS2674415_H	blood protein amount QTL GWAS2674415 (human)		1e-106	blood protein amount		19	15469479	15469480	Human
628871403	GWAS2779632_H	protein measurement QTL GWAS2779632 (human)		1e-27	protein amount (VT:0010120)		19	15469847	15469848	Human
597179918	GWAS1275992_H	protein measurement QTL GWAS1275992 (human)		2e-14	protein measurement		19	15470308	15470309	Human
406960603	GWAS609579_H	protein measurement QTL GWAS609579 (human)		5e-461	protein measurement		19	15472052	15472053	Human
406894047	GWAS543023_H	guanylyl cyclase-activating protein 1 measurement QTL GWAS543023 (human)		2e-55	guanylyl cyclase-activating protein 1 measurement		19	15475861	15475862	Human
406961121	GWAS610097_H	protein measurement QTL GWAS610097 (human)		2e-14	protein measurement		19	15470308	15470309	Human
616489759	GWAS1886342_H	macrophage scavenger receptor types I and II level QTL GWAS1886342 (human)		2e-127	macrophage scavenger receptor types I and II level		19	15469847	15469848	Human
628767195	GWAS2675424_H	blood protein amount QTL GWAS2675424 (human)		4e-18	blood protein amount		19	15469847	15469848	Human
1643451	SLIPL6_H	Serum lipid level QTL 6 (human)	2.19	0.0008	Lipid level		19	1	16075902	Human
406893800	GWAS542776_H	submaxillary gland androgen-regulated protein 3A measurement QTL GWAS542776 (human)		1e-84	submaxillary gland androgen-regulated protein 3A measurement		19	15469479	15469480	Human
616505111	GWAS1901694_H	level of N-acetylmuramoyl-L-alanine amidase in blood serum QTL GWAS1901694 (human)		8e-20	level of N-acetylmuramoyl-L-alanine amidase in blood serum		19	15477469	15477470	Human
628573406	GWAS2481635_H	arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein 2 measurement QTL GWAS2481635 (human)		3e-27	arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein 2 measurement		19	15471569	15471570	Human
628788439	GWAS2696668_H	protein measurement QTL GWAS2696668 (human)		3e-12	protein amount (VT:0010120)		19	15469847	15469848	Human
628926163	GWAS2834392_H	uncharacterized protein KIAA0040 measurement QTL GWAS2834392 (human)		3e-13	uncharacterized protein KIAA0040 measurement		19	15472052	15472053	Human
597429550	GWAS1525624_H	protein measurement QTL GWAS1525624 (human)		3e-12	protein measurement		19	15469847	15469848	Human
616375054	GWAS1855296_H	obsolete_blood protein measurement QTL GWAS1855296 (human)		7e-106	obsolete_blood protein measurement		19	15469479	15469480	Human
617198975	GWAS2179415_H	level of N-acetylmuramoyl-L-alanine amidase in blood QTL GWAS2179415 (human)		3e-35	level of N-acetylmuramoyl-L-alanine amidase in blood		19	15477433	15477434	Human
406891255	GWAS540231_H	adrenomedullin measurement QTL GWAS540231 (human)		2e-26	adrenomedullin measurement		19	15476534	15476535	Human
597303075	GWAS1399149_H	level of N-acetylmuramoyl-L-alanine amidase in blood serum QTL GWAS1399149 (human)		2e-25	level of N-acetylmuramoyl-L-alanine amidase in blood serum		19	15475900	15475901	Human
616377351	GWAS1857593_H	obsolete_blood protein measurement QTL GWAS1857593 (human)		4e-14	obsolete_blood protein measurement		19	15469847	15469848	Human
406995960	GWAS644936_H	level of N-acetylmuramoyl-L-alanine amidase in blood serum QTL GWAS644936 (human)		2e-25	level of N-acetylmuramoyl-L-alanine amidase in blood serum		19	15475900	15475901	Human
407235204	GWAS884180_H	blood protein measurement QTL GWAS884180 (human)		1e-21	blood protein measurement		19	15469479	15469480	Human
628579765	GWAS2487994_H	protein LDOC1 measurement QTL GWAS2487994 (human)		6e-76	protein LDOC1 measurement		19	15472052	15472053	Human
406893186	GWAS542162_H	transmembrane protein 2 measurement QTL GWAS542162 (human)		1e-17	transmembrane protein 2 measurement		19	15475078	15475079	Human
1581534	BP76_H	Blood pressure QTL 76 (human)	2	0.001	Blood pressure	pulse pressure	19	1	16075902	Human
1581535	BP65_H	Blood pressure QTL 65 (human)	3.1	0.001	Blood pressure	pulse pressure	19	1	16075902	Human
597301334	GWAS1397408_H	transmembrane protein 2 measurement QTL GWAS1397408 (human)		1e-17	transmembrane protein 2 measurement		19	15475078	15475079	Human
406891675	GWAS540651_H	arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein 2 measurement QTL GWAS540651 (human)		3e-27	arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein 2 measurement		19	15471569	15471570	Human
628873638	GWAS2781867_H	protein LDOC1 measurement QTL GWAS2781867 (human)		3e-97	protein LDOC1 measurement		19	15472052	15472053	Human
597121609	GWAS1217683_H	blood protein measurement QTL GWAS1217683 (human)		4e-18	blood protein measurement		19	15469847	15469848	Human
597301118	GWAS1397192_H	arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein 2 measurement QTL GWAS1397192 (human)		3e-27	arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein 2 measurement		19	15471569	15471570	Human
617200428	GWAS2180868_H	level of N-acetylmuramoyl-L-alanine amidase in blood QTL GWAS2180868 (human)		8e-20	level of N-acetylmuramoyl-L-alanine amidase in blood		19	15477469	15477470	Human
628690067	GWAS2598296_H	level of N-acetylmuramoyl-L-alanine amidase in blood serum QTL GWAS2598296 (human)		2e-25	level of N-acetylmuramoyl-L-alanine amidase in blood serum		19	15475900	15475901	Human
406951853	GWAS600829_H	protein measurement QTL GWAS600829 (human)		1e-27	protein measurement		19	15469847	15469848	Human
616368464	GWAS1848706_H	obsolete_macrophage scavenger receptor types I and II measurement QTL GWAS1848706 (human)		2e-127	obsolete_macrophage scavenger receptor types I and II measurement		19	15469847	15469848	Human
628806295	GWAS2714524_H	protein measurement QTL GWAS2714524 (human)		2e-14	protein amount (VT:0010120)		19	15470308	15470309	Human
628583834	GWAS2492063_H	guanylyl cyclase-activating protein 1 measurement QTL GWAS2492063 (human)		2e-55	guanylyl cyclase-activating protein 1 measurement		19	15475861	15475862	Human
616481105	GWAS1877688_H	blood protein amount QTL GWAS1877688 (human)		4e-14	blood protein amount		19	15469847	15469848	Human
597301352	GWAS1397426_H	protein LDOC1 measurement QTL GWAS1397426 (human)		6e-76	protein LDOC1 measurement		19	15472052	15472053	Human
616504395	GWAS1900978_H	level of N-acetylmuramoyl-L-alanine amidase in blood serum QTL GWAS1900978 (human)		4e-26	level of N-acetylmuramoyl-L-alanine amidase in blood serum		19	15470558	15470559	Human
628768142	GWAS2676371_H	blood protein amount QTL GWAS2676371 (human)		2e-173	blood protein amount		19	15471674	15471675	Human
407203760	GWAS852736_H	blood protein measurement QTL GWAS852736 (human)		4e-14	blood protein measurement		19	15469847	15469848	Human
597176164	GWAS1272238_H	macrophage scavenger receptor types I and II measurement QTL GWAS1272238 (human)		2e-127	macrophage scavenger receptor types I and II measurement		19	15469847	15469848	Human
597172836	GWAS1268910_H	protein LDOC1 measurement QTL GWAS1268910 (human)		3e-97	protein LDOC1 measurement		19	15472052	15472053	Human
628366984	GWAS2287828_H	uncharacterized protein KIAA0040 measurement QTL GWAS2287828 (human)		3e-13	uncharacterized protein KIAA0040 measurement		19	15472052	15472053	Human
628925568	GWAS2833797_H	stromal interaction molecule 1 measurement QTL GWAS2833797 (human)		8e-24	stromal interaction molecule 1 measurement		19	15472052	15472053	Human
628579978	GWAS2488207_H	transmembrane protein 2 measurement QTL GWAS2488207 (human)		1e-17	transmembrane protein 2 measurement		19	15475078	15475079	Human

Markers in Region

PGLYRP2_3637

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	19	15,579,384 - 15,580,182	UniSTS	GRCh37
Build 36	19	15,440,384 - 15,441,182	RGD	NCBI36
Celera	19	15,476,196 - 15,476,994	RGD
HuRef	19	15,147,135 - 15,147,933	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

adipose tissue	alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system
847	1400	1609	1128	2602	1276	1827	583	1568	448	1712	4406	4139	27	1485	509	1241	1146	136

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001363546	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_052890	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AB073610	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AC011492	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AF384856	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK055882	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK289415	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK292292	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AY358156	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC136551	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC136552	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC144238	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH471106	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CP068259	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	DB041324	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENST00000292609 ⟹ ENSP00000292609

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	19	15,468,645 - 15,479,501 (-)	Ensembl

Ensembl Acc Id:

ENST00000340880 ⟹ ENSP00000345968

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	19	15,468,645 - 15,479,501 (-)	Ensembl

Ensembl Acc Id:

ENST00000594637 ⟹ ENSP00000470112

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	19	15,476,353 - 15,479,831 (-)	Ensembl

Ensembl Acc Id:

ENST00000601792 ⟹ ENSP00000472856

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	19	15,476,235 - 15,498,956 (-)	Ensembl

Ensembl Acc Id:

ENST00000851089 ⟹ ENSP00000521148

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	19	15,468,652 - 15,498,932 (-)	Ensembl

Ensembl Acc Id:

ENST00000851090 ⟹ ENSP00000521149

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	19	15,468,652 - 15,498,932 (-)	Ensembl

Ensembl Acc Id:

ENST00000851091 ⟹ ENSP00000521150

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	19	15,468,652 - 15,498,920 (-)	Ensembl

Ensembl Acc Id:

ENST00000851092 ⟹ ENSP00000521151

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	19	15,468,652 - 15,480,327 (-)	Ensembl

Ensembl Acc Id:

ENST00000851093 ⟹ ENSP00000521152

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	19	15,468,648 - 15,479,887 (-)	Ensembl

Ensembl Acc Id:

ENST00000851094 ⟹ ENSP00000521153

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	19	15,468,642 - 15,479,501 (-)	Ensembl

Ensembl Acc Id:

ENST00000851095 ⟹ ENSP00000521154

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	19	15,468,652 - 15,479,501 (-)	Ensembl

Ensembl Acc Id:

ENST00000851096 ⟹ ENSP00000521155

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	19	15,468,652 - 15,479,501 (-)	Ensembl

Ensembl Acc Id:

ENST00000851097 ⟹ ENSP00000521156

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	19	15,468,652 - 15,479,501 (-)	Ensembl

Ensembl Acc Id:

ENST00000969569 ⟹ ENSP00000639628

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	19	15,468,645 - 15,479,510 (-)	Ensembl

RefSeq Acc Id:

NM_001363546 ⟹ NP_001350475

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38	19	15,468,645 - 15,479,501 (-)	NCBI
T2T-CHM13v2.0	19	15,593,641 - 15,604,523 (-)	NCBI

Sequence:

show sequence

ATTCGCCGCTGGACTTTGACAGTGGTCAAAGGCTCTGCTCAGTTCTCTGTGCCTGTCTCCCTCC
AGCACTGCCGAGGTTCTCTGCCGAGGCCAACCAGAAATACCCCTTGGAAGCTGGAATCCTGCAA
CAATGGCCCAGGGTGTCCTCTGGATCCTACTCGGATTGCTACTGTGGTCAGACCCAGGGACAGC
CTCCCTGCCCCTGCTCATGGACTCTGTCATCCAGGCCCTGGCTGAGCTGGAGCAGAAAGTGCCA
GCTGCCAAGACCAGACACACAGCTTCTGCGTGGCTGATGTCAGCTCCAAACTCTGGCCCCCACA
ATCGCCTCTACCACTTCCTGCTGGGGGCATGGAGCCTCAATGCTACAGAGTTGGATCCCTGCCC
ACTAAGCCCAGAGCTGTTAGGCCTGACCAAGGAGGTGGCCCGACATGACGTACGAGAAGGGAAG
GAATATGGGGTGGTGCTGGCACCTGATGGCTCGACCGTGGCTGTGGAGCCTCTGCTGGCGGGGC
TGGAGGCAGGGCTGCAAGGGCGCAGGGTCATAAATTTGCCCTTGGACAGCATGGCTGCCCCTTG
GGAGACTGGAGATACCTTTCCAGATGTTGTGGCCATTGCTCCAGATGTAAGAGCCACCTCCTCC
CCAGGACTCAGGGATGGCTCTCCAGATGTCACCACTGCAGATATTGGAGCCAACACTCCAGATG
CTACAAAAGGCTGTCCAGATGTCCAAGCTTCCTTGCCAGATGCCAAAGCCAAGTCCCCACCGAC
CATGGTGGACAGCCTCCTGGCAGTCACCCTGGCTGGAAACCTGGGCCTGACCTTCCTCCGAGGT
TCCCAGACCCAGAGCCATCCAGACCTGGGAACTGAGGGCTGCTGGGACCAGCTCTCTGCCCCTC
GGACCTTTACGCTTTTGGACCCCAAGGCATCTCTGTTAACCATGGCCTTCCTCAATGGCGCCCT
GGATGGGGTCATCCTTGGAGACTACCTGAGCCGGACTCCTGAGCCCCGGCCATCCCTCAGCCAC
TTGCTGAGCCAGTACTATGGGGCTGGGGTGGCCAGAGACCCAGGGTTCCGCAGCAACTTCCGAC
GGCAGAACGGTGCTGCTCTGACTTCAGCCTCCATCCTGGCCCAGCAGGTGTGGGGAACCCTTGT
CCTTCTACAGAGGCTGGAGCCAGTACACCTCCAGCTTCAGTGCATGAGCCAAGAACAGCTGGCC
CAGGTGGCTGCCAATGCTACCAAGGAATTCACTGAGGCCTTCCTGGGATGCCCGGCCATCCACC
CCCGCTGCCGCTGGGGAGCGGCGCCTTATCGGGGCCGCCCGAAGCTGCTGCAGCTGCCGCTGGG
ATTCTTGTACGTGCATCACACCTACGTGCCTGCACCACCCTGCACGGACTTCACGCGCTGCGCA
GCCAACATGCGCTCCATGCAGCGCTACCACCAGGACACGCAAGGCTGGGGAGACATCGGCTACA
GTTTCGTGGTGGGCTCGGACGGCTACGTGTACGAGGGACGCGGCTGGCACTGGGTGGGCGCCCA
CACGCTCGGCCACAACTCCCGGGGCTTCGGCGTGGCCATAGTGGGCAACTACACCGCGGCGCTG
CCCACCGAGGCCGCTCTGCGCACGGTGCGCGACACGCTCCCGAGTTGTGCGGTGCGCGCCGGCC
TCCTGCGGCCAGACTACGCGCTGCTGGGCCACCGCCAGCTGGTGCGCACCGACTGCCCCGGCGA
CGCGCTCTTCGACCTGCTGCGCACCTGGCCGCACTTCACCGCGGTGAGTCTTCGCAGCCTGCAC
TACACGGCCCGCCGCCCCTCCGTCTACACAAGCTCCACGAGGCCCCTGCCCCCTGCCTGTAACA
GCTGTGCCCGCACAGCCTCAGCCAGGCCCCCAACTTCCCGGCGGCACGTCTATTCAGGAAACCT
AGGCCCAGCCTTTGCGGGTCACTCTGCGGGCAACATCCCTGATCCTGTGACTTCTGCCTATGCA
GCCTCAGCTCAGCCCCAGACCCAGCCAGCCTGTCCTTTCCCCAGCTCCTAATACCTCTACCTTT
CCAGCCAAGGCATGGACCCTGACACCTGCCAACAGCCCCTCTGCCCTCACAACCTCAGCCTGGC
CTTCATGACTTCTCTACCCAAGTCACAACCTGTCAGGCTGCACCACCTCATCCTGGCCCGCCGA
ACCTTGACCTCACCCCTGCCCCTACCCGAAGGCCCTCTGTCCACACAACATGAACCTAGGCTGT
GACCTTTTGCCTTCACAACCTCTGTCCAGTCCTTAATCCTGTGTTGCAATTCTCTGTCCAGACA
ATCTCAACTCTGAGGTTGCTTGTTTCGTCCCTGACTCCTTAACCCCTGATGACAACTCTTATGC
CAGCACAACTTTGACCTGATGACCTCATCCCAGCCCTTGATCGCCATCACTAAAACAATTTTAG
AATCACACCTGGACAATCTCGTGCTACCTACATACTGCCACTCCATTTCATTAAGCTATTGACT
AGCACATCCATCTCGGCCTATAGTTGGCTTTGTCCTCACTCTCTCACTTTGGGCCACTGTCCCC
TCCCTGATCCAGGGTTCCACCACCAGGAGGGCAGACCCAGCCACATACCACAACCACCCCCAAG
CCTCACACTCCCTTGTCTTTTTCCAGACTGTTAAGCCAAGACCTGCCAGGAGTGTCTCTAAGAG
ATCCAGGAGGGAGCCACCCCCAAGGACCCTGCCAGCCACAGACCTCCAATAAAGACAGCATGGA
AACAAA

hide sequence

RefSeq Acc Id:

NM_052890 ⟹ NP_443122

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38	19	15,468,645 - 15,479,501 (-)	NCBI
GRCh37	19	15,579,456 - 15,590,315 (-)	ENTREZGENE
Build 36	19	15,440,456 - 15,451,315 (-)	NCBI Archive
HuRef	19	15,147,207 - 15,158,066 (-)	ENTREZGENE
CHM1_1	19	15,579,067 - 15,589,927 (-)	NCBI
T2T-CHM13v2.0	19	15,593,641 - 15,604,523 (-)	NCBI

Sequence:

show sequence

ATTCGCCGCTGGACTTTGACAGTGGTCAAAGGCTCTGCTCAGTTCTCTGTGCCTGTCTCCCTCC
AGCACTGCCGAGGTTCTCTGCCGAGGCCAACCAGAAATACCCCTTGGAAGCTGGAATCCTGCAA
CAATGGCCCAGGGTGTCCTCTGGATCCTACTCGGATTGCTACTGTGGTCAGACCCAGGGACAGC
CTCCCTGCCCCTGCTCATGGACTCTGTCATCCAGGCCCTGGCTGAGCTGGAGCAGAAAGTGCCA
GCTGCCAAGACCAGACACACAGCTTCTGCGTGGCTGATGTCAGCTCCAAACTCTGGCCCCCACA
ATCGCCTCTACCACTTCCTGCTGGGGGCATGGAGCCTCAATGCTACAGAGTTGGATCCCTGCCC
ACTAAGCCCAGAGCTGTTAGGCCTGACCAAGGAGGTGGCCCGACATGACGTACGAGAAGGGAAG
GAATATGGGGTGGTGCTGGCACCTGATGGCTCGACCGTGGCTGTGGAGCCTCTGCTGGCGGGGC
TGGAGGCAGGGCTGCAAGGGCGCAGGGTCATAAATTTGCCCTTGGACAGCATGGCTGCCCCTTG
GGAGACTGGAGATACCTTTCCAGATGTTGTGGCCATTGCTCCAGATGTAAGAGCCACCTCCTCC
CCAGGACTCAGGGATGGCTCTCCAGATGTCACCACTGCAGATATTGGAGCCAACACTCCAGATG
CTACAAAAGGCTGTCCAGATGTCCAAGCTTCCTTGCCAGATGCCAAAGCCAAGTCCCCACCGAC
CATGGTGGACAGCCTCCTGGCAGTCACCCTGGCTGGAAACCTGGGCCTGACCTTCCTCCGAGGT
TCCCAGACCCAGAGCCATCCAGACCTGGGAACTGAGGGCTGCTGGGACCAGCTCTCTGCCCCTC
GGACCTTTACGCTTTTGGACCCCAAGGCATCTCTGTTAACCATGGCCTTCCTCAATGGCGCCCT
GGATGGGGTCATCCTTGGAGACTACCTGAGCCGGACTCCTGAGCCCCGGCCATCCCTCAGCCAC
TTGCTGAGCCAGTACTATGGGGCTGGGGTGGCCAGAGACCCAGGGTTCCGCAGCAACTTCCGAC
GGCAGAACGGTGCTGCTCTGACTTCAGCCTCCATCCTGGCCCAGCAGGTGTGGGGAACCCTTGT
CCTTCTACAGAGGCTGGAGCCAGTACACCTCCAGCTTCAGTGCATGAGCCAAGAACAGCTGGCC
CAGGTGGCTGCCAATGCTACCAAGGAATTCACTGAGGCCTTCCTGGGATGCCCGGCCATCCACC
CCCGCTGCCGCTGGGGAGCGGCGCCTTATCGGGGCCGCCCGAAGCTGCTGCAGCTGCCGCTGGG
ATTCTTGTACGTGCATCACACCTACGTGCCTGCACCACCCTGCACGGACTTCACGCGCTGCGCA
GCCAACATGCGCTCCATGCAGCGCTACCACCAGGACACGCAAGGCTGGGGAGACATCGGCTACA
GTTTCGTGGTGGGCTCGGACGGCTACGTGTACGAGGGACGCGGCTGGCACTGGGTGGGCGCCCA
CACGCTCGGCCACAACTCCCGGGGCTTCGGCGTGGCCATAGTGGGCAACTACACCGCGGCGCTG
CCCACCGAGGCCGCTCTGCGCACGGTGCGCGACACGCTCCCGAGTTGTGCGGTGCGCGCCGGCC
TCCTGCGGCCAGACTACGCGCTGCTGGGCCACCGCCAGCTGGTGCGCACCGACTGCCCCGGCGA
CGCGCTCTTCGACCTGCTGCGCACCTGGCCGCACTTCACCGCGACTGTTAAGCCAAGACCTGCC
AGGAGTGTCTCTAAGAGATCCAGGAGGGAGCCACCCCCAAGGACCCTGCCAGCCACAGACCTCC
AATAAAGACAGCATGGAAACAAA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001350475	(Get FASTA)	NCBI Sequence Viewer
	NP_443122	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAI36552	(Get FASTA)	NCBI Sequence Viewer
	AAI36553	(Get FASTA)	NCBI Sequence Viewer
	AAI44239	(Get FASTA)	NCBI Sequence Viewer
	AAL05629	(Get FASTA)	NCBI Sequence Viewer
	AAQ88523	(Get FASTA)	NCBI Sequence Viewer
	BAB71034	(Get FASTA)	NCBI Sequence Viewer
	BAD38647	(Get FASTA)	NCBI Sequence Viewer
	BAF82104	(Get FASTA)	NCBI Sequence Viewer
	BAF84981	(Get FASTA)	NCBI Sequence Viewer
	EAW84482	(Get FASTA)	NCBI Sequence Viewer
	EAW84483	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSP00000292609
	ENSP00000292609.3
	ENSP00000345968
	ENSP00000345968.4
GenBank Protein	Q96PD5	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	NP_443122 ⟸ NM_052890
- Peptide Label:	isoform 1 precursor
- UniProtKB:	Q96N74 (UniProtKB/Swiss-Prot), Q68CK1 (UniProtKB/Swiss-Prot), B7ZM33 (UniProtKB/Swiss-Prot), B2RMZ2 (UniProtKB/Swiss-Prot), A8K8C7 (UniProtKB/Swiss-Prot), A8K050 (UniProtKB/Swiss-Prot), Q9UC60 (UniProtKB/Swiss-Prot), Q96PD5 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MAQGVLWILLGLLLWSDPGTASLPLLMDSVIQALAELEQKVPAAKTRHTASAWLMSAPNSGPHN RLYHFLLGAWSLNATELDPCPLSPELLGLTKEVARHDVREGKEYGVVLAPDGSTVAVEPLLAGL EAGLQGRRVINLPLDSMAAPWETGDTFPDVVAIAPDVRATSSPGLRDGSPDVTTADIGANTPDA TKGCPDVQASLPDAKAKSPPTMVDSLLAVTLAGNLGLTFLRGSQTQSHPDLGTEGCWDQLSAPR TFTLLDPKASLLTMAFLNGALDGVILGDYLSRTPEPRPSLSHLLSQYYGAGVARDPGFRSNFRR QNGAALTSASILAQQVWGTLVLLQRLEPVHLQLQCMSQEQLAQVAANATKEFTEAFLGCPAIHP RCRWGAAPYRGRPKLLQLPLGFLYVHHTYVPAPPCTDFTRCAANMRSMQRYHQDTQGWGDIGYS FVVGSDGYVYEGRGWHWVGAHTLGHNSRGFGVAIVGNYTAALPTEAALRTVRDTLPSCAVRAGL LRPDYALLGHRQLVRTDCPGDALFDLLRTWPHFTATVKPRPARSVSKRSRREPPPRTLPATDLQ hide sequence

RefSeq Acc Id:	NP_001350475 ⟸ NM_001363546
- Peptide Label:	isoform 2 precursor

Ensembl Acc Id:

ENSP00000470112 ⟸ ENST00000594637

Ensembl Acc Id:

ENSP00000292609 ⟸ ENST00000292609

Ensembl Acc Id:

ENSP00000472856 ⟸ ENST00000601792

Ensembl Acc Id:

ENSP00000345968 ⟸ ENST00000340880

Ensembl Acc Id:

ENSP00000521156 ⟸ ENST00000851097

Ensembl Acc Id:

ENSP00000521149 ⟸ ENST00000851090

Ensembl Acc Id:

ENSP00000521154 ⟸ ENST00000851095

Ensembl Acc Id:

ENSP00000521148 ⟸ ENST00000851089

Ensembl Acc Id:

ENSP00000521155 ⟸ ENST00000851096

Ensembl Acc Id:

ENSP00000521151 ⟸ ENST00000851092

Ensembl Acc Id:

ENSP00000521152 ⟸ ENST00000851093

Ensembl Acc Id:

ENSP00000521153 ⟸ ENST00000851094

Ensembl Acc Id:

ENSP00000639628 ⟸ ENST00000969569

Ensembl Acc Id:

ENSP00000521150 ⟸ ENST00000851091

Protein Domains

N-acetylmuramoyl-L-alanine amidase

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q96PD5-F1-model_v2	AlphaFold	Q96PD5	1-576	view protein structure

Promoters

RGD ID:

7238905

Promoter ID:

EPDNEW_H25198

Type:

initiation region

Name:

PGLYRP2_1

Description:

peptidoglycan recognition protein 2

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38	19	15,479,501 - 15,479,561	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	HGNC:30013	AgrOrtholog
COSMIC	PGLYRP2	COSMIC
Ensembl Genes	ENSG00000161031	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENST00000292609	ENTREZGENE
	ENST00000292609.8	UniProtKB/Swiss-Prot
	ENST00000340880	ENTREZGENE
	ENST00000340880.5	UniProtKB/Swiss-Prot
Gene3D-CATH	3.40.80.10	UniProtKB/Swiss-Prot
GTEx	ENSG00000161031	GTEx
HGNC ID	HGNC:30013	ENTREZGENE
Human Proteome Map	PGLYRP2	Human Proteome Map
InterPro	Amidase/PGRP_sf	UniProtKB/Swiss-Prot
	Amidase_domain	UniProtKB/Swiss-Prot
	PGRP	UniProtKB/Swiss-Prot
	PGRP_domain_met/bac	UniProtKB/Swiss-Prot
KEGG Report	hsa:114770	UniProtKB/Swiss-Prot
NCBI Gene	114770	ENTREZGENE
OMIM	608199	OMIM
PANTHER	N-ACETYLMURAMOYL-L-ALANINE AMIDASE	UniProtKB/Swiss-Prot
	PTHR11022	UniProtKB/Swiss-Prot
Pfam	Amidase_2	UniProtKB/Swiss-Prot
PharmGKB	PA134929965	PharmGKB
SMART	Ami_2	UniProtKB/Swiss-Prot
	PGRP	UniProtKB/Swiss-Prot
Superfamily-SCOP	SSF55846	UniProtKB/Swiss-Prot
UniProt	A8K050	ENTREZGENE
	A8K8C7	ENTREZGENE
	B2RMZ2	ENTREZGENE
	B7ZM33	ENTREZGENE
	M0QYW3_HUMAN	UniProtKB/TrEMBL
	M0R2W8_HUMAN	UniProtKB/TrEMBL
	PGRP2_HUMAN	UniProtKB/Swiss-Prot
	Q68CK1	ENTREZGENE
	Q96N74	ENTREZGENE
	Q96PD5	ENTREZGENE
	Q9UC60	ENTREZGENE
UniProt Secondary	A8K050	UniProtKB/Swiss-Prot
	A8K8C7	UniProtKB/Swiss-Prot
	B2RMZ2	UniProtKB/Swiss-Prot
	B7ZM33	UniProtKB/Swiss-Prot
	Q68CK1	UniProtKB/Swiss-Prot
	Q96N74	UniProtKB/Swiss-Prot
	Q9UC60	UniProtKB/Swiss-Prot

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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