ZFP3 (ZFP3 zinc finger protein) - Rat Genome Database

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Gene: ZFP3 (ZFP3 zinc finger protein) Homo sapiens
Analyze
Symbol: ZFP3
Name: ZFP3 zinc finger protein
RGD ID: 1346211
HGNC Page HGNC:12861
Description: Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus; INTERACTS WITH 2-methylcholine; all-trans-retinoic acid; atrazine.
Type: protein-coding
Previously known as: FLJ30726; zfp-3; zinc finger protein 3 homolog; zinc finger protein 752; zinc finger protein homologous to Zfp-3 in mouse; zinc finger protein-3; ZNF752
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38175,078,467 - 5,096,374 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl175,078,467 - 5,096,374 (+)EnsemblGRCh38hg38GRCh38
GRCh37174,981,762 - 4,999,669 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36174,922,478 - 4,940,393 (+)NCBINCBI36Build 36hg18NCBI36
Celera174,999,378 - 5,017,292 (+)NCBICelera
Cytogenetic Map17pter-p12NCBI
HuRef174,872,073 - 4,889,976 (+)NCBIHuRef
CHM1_1174,991,407 - 5,009,320 (+)NCBICHM1_1
T2T-CHM13v2.0174,971,854 - 4,989,747 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cellular_component  (ND)
nucleus  (IBA,IEA)

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data
ZFP3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38175,078,467 - 5,096,374 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl175,078,467 - 5,096,374 (+)EnsemblGRCh38hg38GRCh38
GRCh37174,981,762 - 4,999,669 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36174,922,478 - 4,940,393 (+)NCBINCBI36Build 36hg18NCBI36
Celera174,999,378 - 5,017,292 (+)NCBICelera
Cytogenetic Map17pter-p12NCBI
HuRef174,872,073 - 4,889,976 (+)NCBIHuRef
CHM1_1174,991,407 - 5,009,320 (+)NCBICHM1_1
T2T-CHM13v2.0174,971,854 - 4,989,747 (+)NCBIT2T-CHM13v2.0
Zfp3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391170,655,273 - 70,663,754 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1170,655,035 - 70,663,754 (+)EnsemblGRCm39 Ensembl
GRCm381170,764,447 - 70,772,928 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1170,764,209 - 70,772,928 (+)EnsemblGRCm38mm10GRCm38
MGSCv371170,577,949 - 70,586,430 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361170,580,642 - 70,589,123 (+)NCBIMGSCv36mm8
Celera1178,318,487 - 78,326,968 (+)NCBICelera
Cytogenetic Map11B3NCBI
cM Map1141.0NCBI
Zfp3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81055,977,027 - 55,985,284 (+)NCBIGRCr8
mRatBN7.21055,478,424 - 55,486,686 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1055,478,097 - 55,488,000 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1060,159,339 - 60,167,572 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01059,647,857 - 59,656,098 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01055,146,961 - 55,155,194 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01057,386,228 - 57,394,471 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1057,386,228 - 57,394,471 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01057,132,328 - 57,140,571 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41057,658,225 - 57,666,484 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1054,624,565 - 54,632,822 (+)NCBICelera
Cytogenetic Map10q24NCBI
Zfp3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495546710,469,505 - 10,486,695 (+)NCBIChiLan1.0ChiLan1.0
ZFP3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21912,670,088 - 12,706,392 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11714,638,538 - 14,692,766 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0175,160,006 - 5,162,452 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1175,134,363 - 5,151,430 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl175,128,871 - 5,130,379 (+)NCBIpanpan1.1panPan2
PanPan1.1 Ensembl175,128,871 - 5,130,379 (+)Ensemblpanpan1.1panPan2
ZFP3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1531,500,494 - 31,591,386 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl531,581,580 - 31,583,091 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha531,638,441 - 31,729,781 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0531,604,028 - 31,695,099 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl531,684,171 - 31,695,019 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1531,570,615 - 31,661,762 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0531,530,018 - 31,621,463 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0531,706,410 - 31,797,782 (-)NCBIUU_Cfam_GSD_1.0
Zfp3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560253,238,592 - 53,250,028 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366772,647,889 - 2,662,710 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366772,652,221 - 2,662,370 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZFP3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1164,544,161 - 4,559,522 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl164,556,690 - 4,558,204 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605917,067,721 - 17,085,117 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Zfp3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247868,913,772 - 8,923,424 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247868,913,734 - 8,924,863 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in ZFP3
16 total Variants

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 17p13.3-13.2(chr17:193307-5652222)x1 copy number loss See cases [RCV000053384] Chr17:193307..5652222 [GRCh38]
Chr17:45835..5555542 [GRCh37]
Chr17:43098..5496266 [NCBI36]
Chr17:17p13.3-13.2		 pathogenic
GRCh38/hg38 17p13.2-13.1(chr17:3601515-7178024)x1 copy number loss See cases [RCV000053406] Chr17:3601515..7178024 [GRCh38]
Chr17:3504809..7081343 [GRCh37]
Chr17:3451558..7022067 [NCBI36]
Chr17:17p13.2-13.1		 pathogenic
GRCh38/hg38 17p13.3-13.2(chr17:2062380-5258340)x1 copy number loss See cases [RCV000133721] Chr17:2062380..5258340 [GRCh38]
Chr17:1965674..5161635 [GRCh37]
Chr17:1912424..5102359 [NCBI36]
Chr17:17p13.3-13.2		 pathogenic
GRCh38/hg38 17p13.3-13.1(chr17:162088-6959050)x1 copy number loss See cases [RCV000134135] Chr17:162088..6959050 [GRCh38]
Chr17:45835..6862369 [GRCh37]
Chr17:11879..6803093 [NCBI36]
Chr17:17p13.3-13.1		 pathogenic
GRCh38/hg38 17p13.3-13.1(chr17:198748-7491129)x3 copy number gain See cases [RCV000134970] Chr17:198748..7491129 [GRCh38]
Chr17:50690..7394448 [GRCh37]
Chr17:48539..7335172 [NCBI36]
Chr17:17p13.3-13.1		 pathogenic
GRCh38/hg38 17p13.2(chr17:4044302-5943772)x1 copy number loss See cases [RCV000135548] Chr17:4044302..5943772 [GRCh38]
Chr17:3947596..5847092 [GRCh37]
Chr17:3894345..5787816 [NCBI36]
Chr17:17p13.2		 likely pathogenic
GRCh38/hg38 17p13.3-13.1(chr17:162016-7697012)x1 copy number loss See cases [RCV000138214] Chr17:162016..7697012 [GRCh38]
Chr17:45835..7600330 [GRCh37]
Chr17:11807..7541055 [NCBI36]
Chr17:17p13.3-13.1		 pathogenic
GRCh38/hg38 17p13.3-12(chr17:162016-12343901)x3 copy number gain See cases [RCV000138531] Chr17:162016..12343901 [GRCh38]
Chr17:45835..12247218 [GRCh37]
Chr17:11807..12187943 [NCBI36]
Chr17:17p13.3-12		 pathogenic
GRCh38/hg38 17p13.2(chr17:4092608-5354473)x3 copy number gain See cases [RCV000139650] Chr17:4092608..5354473 [GRCh38]
Chr17:3995902..5257768 [GRCh37]
Chr17:3942651..5198492 [NCBI36]
Chr17:17p13.2		 likely benign
GRCh38/hg38 17p13.2(chr17:4915519-5197126)x1 copy number loss See cases [RCV000141706] Chr17:4915519..5197126 [GRCh38]
Chr17:4818814..5100421 [GRCh37]
Chr17:4759591..5041145 [NCBI36]
Chr17:17p13.2		 likely pathogenic|uncertain significance
GRCh38/hg38 17p13.3-13.2(chr17:150732-5935377)x1 copy number loss See cases [RCV000141658] Chr17:150732..5935377 [GRCh38]
Chr17:525..5838697 [GRCh37]
Chr17:525..5779421 [NCBI36]
Chr17:17p13.3-13.2		 pathogenic
GRCh38/hg38 17p13.3-12(chr17:150732-14764202)x3 copy number gain See cases [RCV000142236] Chr17:150732..14764202 [GRCh38]
Chr17:525..14667519 [GRCh37]
Chr17:525..14608244 [NCBI36]
Chr17:17p13.3-12		 pathogenic
GRCh37/hg19 17p13.3-13.2(chr17:1751557-5378509)x1 copy number loss See cases [RCV000445994] Chr17:1751557..5378509 [GRCh37]
Chr17:17p13.3-13.2		 pathogenic
GRCh37/hg19 17p13.3-13.1(chr17:1113102-6742486) copy number gain See cases [RCV000445679] Chr17:1113102..6742486 [GRCh37]
Chr17:17p13.3-13.1		 pathogenic
GRCh37/hg19 17p13.3-12(chr17:525-15027737)x3 copy number gain See cases [RCV000511786] Chr17:525..15027737 [GRCh37]
Chr17:17p13.3-12		 pathogenic
GRCh37/hg19 17p13.3-q25.3(chr17:526-81041938) copy number gain See cases [RCV000511439] Chr17:526..81041938 [GRCh37]
Chr17:17p13.3-q25.3		 pathogenic
NM_153018.3(ZFP3):c.723T>G (p.Ile241Met) single nucleotide variant not specified [RCV004313418] Chr17:5092227 [GRCh38]
Chr17:4995522 [GRCh37]
Chr17:17p13.2		 uncertain significance
NM_153018.3(ZFP3):c.398G>C (p.Arg133Thr) single nucleotide variant not specified [RCV004316351] Chr17:5091902 [GRCh38]
Chr17:4995197 [GRCh37]
Chr17:17p13.2		 uncertain significance
GRCh37/hg19 17p13.3-q25.3(chr17:526-81041938)x3 copy number gain See cases [RCV000512441] Chr17:526..81041938 [GRCh37]
Chr17:17p13.3-q25.3		 pathogenic
GRCh37/hg19 17p13.2(chr17:4036861-5174346)x3 copy number gain not provided [RCV000683881] Chr17:4036861..5174346 [GRCh37]
Chr17:17p13.2		 uncertain significance
GRCh37/hg19 17p13.3-12(chr17:525-11186432)x3 copy number gain not provided [RCV000683866] Chr17:525..11186432 [GRCh37]
Chr17:17p13.3-12		 pathogenic
GRCh37/hg19 17p13.3-q25.3(chr17:8547-81060040)x3 copy number gain not provided [RCV000739324] Chr17:8547..81060040 [GRCh37]
Chr17:17p13.3-q25.3		 pathogenic
GRCh37/hg19 17p13.3-q25.3(chr17:7214-81058310)x3 copy number gain not provided [RCV000739320] Chr17:7214..81058310 [GRCh37]
Chr17:17p13.3-q25.3		 pathogenic
GRCh37/hg19 17p13.3-q25.3(chr17:12344-81057996)x3 copy number gain not provided [RCV000739325] Chr17:12344..81057996 [GRCh37]
Chr17:17p13.3-q25.3		 pathogenic
GRCh37/hg19 17p13.3-13.2(chr17:8547-5627408)x1 copy number loss See cases [RCV001007429] Chr17:8547..5627408 [GRCh37]
Chr17:17p13.3-13.2		 pathogenic
GRCh37/hg19 17p13.3-13.2(chr17:47546-6287620) copy number gain Chromosome 17P13.3, telomeric, duplication syndrome [RCV000767586] Chr17:47546..6287620 [GRCh37]
Chr17:17p13.3-13.2		 pathogenic
GRCh37/hg19 17p13.2(chr17:4845435-5097302)x3 copy number gain not provided [RCV000847650] Chr17:4845435..5097302 [GRCh37]
Chr17:17p13.2		 uncertain significance
GRCh37/hg19 17p13.2(chr17:3759126-6128911)x1 copy number loss not provided [RCV000849625] Chr17:3759126..6128911 [GRCh37]
Chr17:17p13.2		 uncertain significance
GRCh37/hg19 17p13.2(chr17:4113551-5023913) copy number loss not specified [RCV002052580] Chr17:4113551..5023913 [GRCh37]
Chr17:17p13.2		 uncertain significance
Single allele duplication 7p22.1 microduplication syndrome [RCV002227783] Chr17:4772213..5119909 [GRCh38]
Chr17:17p13.2		 uncertain significance
GRCh37/hg19 17p13.2(chr17:4867994-5233679)x1 copy number loss not provided [RCV002473634] Chr17:4867994..5233679 [GRCh37]
Chr17:17p13.2		 uncertain significance
NM_153018.3(ZFP3):c.1018A>C (p.Asn340His) single nucleotide variant not specified [RCV004090067] Chr17:5092522 [GRCh38]
Chr17:4995817 [GRCh37]
Chr17:17p13.2		 uncertain significance
GRCh37/hg19 17p13.2(chr17:4658216-5266343)x3 copy number gain not provided [RCV002475693] Chr17:4658216..5266343 [GRCh37]
Chr17:17p13.2		 uncertain significance
NM_153018.3(ZFP3):c.1472A>G (p.His491Arg) single nucleotide variant not specified [RCV004156425] Chr17:5092976 [GRCh38]
Chr17:4996271 [GRCh37]
Chr17:17p13.2		 uncertain significance
NM_153018.3(ZFP3):c.854A>T (p.Glu285Val) single nucleotide variant not specified [RCV004132051] Chr17:5092358 [GRCh38]
Chr17:4995653 [GRCh37]
Chr17:17p13.2		 uncertain significance
NM_153018.3(ZFP3):c.356G>C (p.Gly119Ala) single nucleotide variant not specified [RCV004069220] Chr17:5091860 [GRCh38]
Chr17:4995155 [GRCh37]
Chr17:17p13.2		 uncertain significance
NM_153018.3(ZFP3):c.226T>C (p.Phe76Leu) single nucleotide variant not specified [RCV004210547] Chr17:5091730 [GRCh38]
Chr17:4995025 [GRCh37]
Chr17:17p13.2		 uncertain significance
NM_153018.3(ZFP3):c.1463G>A (p.Arg488Gln) single nucleotide variant not specified [RCV004114814] Chr17:5092967 [GRCh38]
Chr17:4996262 [GRCh37]
Chr17:17p13.2		 uncertain significance
NM_153018.3(ZFP3):c.683A>C (p.Glu228Ala) single nucleotide variant not specified [RCV004140750] Chr17:5092187 [GRCh38]
Chr17:4995482 [GRCh37]
Chr17:17p13.2		 uncertain significance
NM_153018.3(ZFP3):c.1214C>T (p.Thr405Ile) single nucleotide variant not specified [RCV004075703] Chr17:5092718 [GRCh38]
Chr17:4996013 [GRCh37]
Chr17:17p13.2		 uncertain significance
NM_153018.3(ZFP3):c.554G>A (p.Arg185Gln) single nucleotide variant not specified [RCV004172462] Chr17:5092058 [GRCh38]
Chr17:4995353 [GRCh37]
Chr17:17p13.2		 uncertain significance
NM_153018.3(ZFP3):c.1295A>G (p.Asp432Gly) single nucleotide variant not specified [RCV004114432] Chr17:5092799 [GRCh38]
Chr17:4996094 [GRCh37]
Chr17:17p13.2		 uncertain significance
NM_153018.3(ZFP3):c.235T>C (p.Ser79Pro) single nucleotide variant not specified [RCV004267589] Chr17:5091739 [GRCh38]
Chr17:4995034 [GRCh37]
Chr17:17p13.2		 uncertain significance
GRCh38/hg38 17p13.3-12(chr17:165730-11404096)x3 copy number gain Chromosome 17p13.3 duplication syndrome [RCV003327726] Chr17:165730..11404096 [GRCh38]
Chr17:17p13.3-12		 pathogenic
NM_153018.3(ZFP3):c.1222C>T (p.Leu408Phe) single nucleotide variant not specified [RCV004334848] Chr17:5092726 [GRCh38]
Chr17:4996021 [GRCh37]
Chr17:17p13.2		 uncertain significance
NM_153018.3(ZFP3):c.10G>A (p.Glu4Lys) single nucleotide variant not specified [RCV004348863] Chr17:5091514 [GRCh38]
Chr17:4994809 [GRCh37]
Chr17:17p13.2		 uncertain significance
NM_153018.3(ZFP3):c.463C>T (p.His155Tyr) single nucleotide variant not specified [RCV004350945] Chr17:5091967 [GRCh38]
Chr17:4995262 [GRCh37]
Chr17:17p13.2		 uncertain significance
GRCh37/hg19 17p13.3-13.2(chr17:9474-6017500)x1 copy number loss not specified [RCV003987214] Chr17:9474..6017500 [GRCh37]
Chr17:17p13.3-13.2		 pathogenic
GRCh37/hg19 17p13.3-11.2(chr17:525-21510992)x3 copy number gain not specified [RCV003987215] Chr17:525..21510992 [GRCh37]
Chr17:17p13.3-11.2		 pathogenic
NM_153018.3(ZFP3):c.383C>T (p.Ser128Phe) single nucleotide variant not specified [RCV004486009] Chr17:5091887 [GRCh38]
Chr17:4995182 [GRCh37]
Chr17:17p13.2		 uncertain significance
NM_153018.3(ZFP3):c.1382A>G (p.His461Arg) single nucleotide variant not specified [RCV004486008] Chr17:5092886 [GRCh38]
Chr17:4996181 [GRCh37]
Chr17:17p13.2		 uncertain significance
NC_000017.10:g.(?_422368)_(8285628_?)dup duplication not provided [RCV004581443] Chr17:422368..8285628 [GRCh37]
Chr17:17p13.3-13.1		 uncertain significance
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1569
Count of miRNA genes:892
Interacting mature miRNAs:1026
Transcripts:ENST00000318833
Prediction methods:Miranda, Pita, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Markers in Region
RH66195  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37174,997,899 - 4,998,047UniSTSGRCh37
Build 36174,938,623 - 4,938,771RGDNCBI36
Celera175,015,522 - 5,015,670RGD
Cytogenetic Map17p13.2UniSTS
HuRef174,888,206 - 4,888,354UniSTS
GeneMap99-GB4 RH Map1744.98UniSTS
NCBI RH Map1754.6UniSTS
RH102057  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37174,999,178 - 4,999,329UniSTSGRCh37
Build 36174,939,902 - 4,940,053RGDNCBI36
Celera175,016,801 - 5,016,952RGD
Cytogenetic Map17p13.2UniSTS
HuRef174,889,485 - 4,889,636UniSTS
GeneMap99-GB4 RH Map1746.58UniSTS
STS-AA018406  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37174,997,414 - 4,997,642UniSTSGRCh37
Build 36174,938,138 - 4,938,366RGDNCBI36
Celera175,015,037 - 5,015,265RGD
Cytogenetic Map17p13.2UniSTS
HuRef174,887,721 - 4,887,949UniSTS
GeneMap99-GB4 RH Map1744.45UniSTS
NCBI RH Map1780.9UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system visual system adipose tissue appendage entire extraembryonic component pharyngeal arch
High
Medium 79 15 182 15 164 5 66 74 270 54 131 259 10 57
Low 2305 2668 1427 501 1415 350 4197 2070 3428 337 1276 1288 159 1202 2724 4 2
Below cutoff 29 305 95 92 308 93 62 40 24 14 26 21 3 1 2 7 1

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_153018 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENST00000318833   ⟹   ENSP00000320347
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl175,078,467 - 5,096,374 (+)Ensembl
RefSeq Acc Id: NM_153018   ⟹   NP_694563
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38175,078,467 - 5,096,374 (+)NCBI
GRCh37174,981,754 - 4,999,669 (+)RGD
Build 36174,922,478 - 4,940,393 (+)NCBI Archive
Celera174,999,378 - 5,017,292 (+)RGD
HuRef174,872,073 - 4,889,976 (+)RGD
CHM1_1174,991,407 - 5,009,320 (+)NCBI
T2T-CHM13v2.0174,971,854 - 4,989,747 (+)NCBI
Sequence:
Protein Sequences
Ensembl Protein ENSP00000320347.3
RefSeq Acc Id: NP_694563   ⟸   NM_153018
- Sequence:
Ensembl Acc Id: ENSP00000320347   ⟸   ENST00000318833

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q96NJ6-F1-model_v2 AlphaFold Q96NJ6 1-502 view protein structure

Promoters
RGD ID:6794749
Promoter ID:HG_KWN:24775
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   CD4+TCell_12Hour,   CD4+TCell_2Hour,   K562,   Lymphoblastoid
Transcripts:NM_153018
Position:
Human AssemblyChrPosition (strand)Source
Build 36174,922,151 - 4,922,651 (+)MPROMDB
RGD ID:7233515
Promoter ID:EPDNEW_H22503
Type:initiation region
Name:ZFP3_2
Description:ZFP3 zinc finger protein
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H22502  EPDNEW_H22504  
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh38175,078,250 - 5,078,310EPDNEW
RGD ID:7233517
Promoter ID:EPDNEW_H22504
Type:initiation region
Name:ZFP3_3
Description:ZFP3 zinc finger protein
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H22502  EPDNEW_H22503  
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh38175,078,467 - 5,078,527EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:12861 AgrOrtholog
COSMIC ZFP3 COSMIC
Ensembl Genes ENSG00000180787 Ensembl, UniProtKB/Swiss-Prot
Ensembl Transcript ENST00000318833.4 UniProtKB/Swiss-Prot
Gene3D-CATH Classic Zinc Finger UniProtKB/Swiss-Prot
GTEx ENSG00000180787 GTEx
HGNC ID HGNC:12861 ENTREZGENE
Human Proteome Map ZFP3 Human Proteome Map
InterPro Znf_C2H2_sf UniProtKB/Swiss-Prot
  Znf_C2H2_type UniProtKB/Swiss-Prot
KEGG Report hsa:124961 UniProtKB/Swiss-Prot
NCBI Gene ZFP3 ENTREZGENE
OMIM 194480 OMIM
PANTHER ZINC FINGER AND SCAN DOMAIN-CONTAINING UniProtKB/Swiss-Prot
  ZINC FINGER PROTEIN 46 UniProtKB/Swiss-Prot
Pfam zf-C2H2 UniProtKB/Swiss-Prot
PharmGKB PA37450 PharmGKB
PROSITE ZINC_FINGER_C2H2_1 UniProtKB/Swiss-Prot
  ZINC_FINGER_C2H2_2 UniProtKB/Swiss-Prot
SMART ZnF_C2H2 UniProtKB/Swiss-Prot
Superfamily-SCOP SSF57667 UniProtKB/Swiss-Prot
UniProt ZFP3_HUMAN UniProtKB/Swiss-Prot
UniProt Secondary A5PLL4 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2012-12-04 ZFP3  ZFP3 zinc finger protein    zinc finger protein 3 homolog (mouse)  Symbol and/or name change 5135510 APPROVED