Or52e8 (olfactory receptor family 52 subfamily E member 8) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Or52e8 (olfactory receptor family 52 subfamily E member 8) Rattus norvegicus
Analyze
Symbol: Or52e8
Name: olfactory receptor family 52 subfamily E member 8
RGD ID: 1334364
Description: Predicted to enable olfactory receptor activity. Predicted to be involved in G protein-coupled receptor signaling pathway and detection of chemical stimulus involved in sensory perception of smell. Predicted to be active in plasma membrane. Orthologous to several human genes including OR52E8 (olfactory receptor family 52 subfamily E member 8); INTERACTS WITH bisphenol A; 4,4'-sulfonyldiphenol (ortholog); aflatoxin B1 (ortholog).
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: olfactory receptor 180; olfactory receptor gene Olr180; olfactory receptor Olr180; Olr180; ratchr1-162835948-162834998_ORF
RGD Orthologs
Human
Mouse
Pig
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81168,772,296 - 168,773,246 (-)NCBIGRCr8
mRatBN7.21159,360,430 - 159,361,380 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1159,360,430 - 159,361,380 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1167,353,027 - 167,353,977 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01174,538,940 - 174,539,890 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01167,425,259 - 167,426,209 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01169,855,777 - 169,856,727 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1169,855,777 - 169,856,727 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01176,868,262 - 176,869,212 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41162,739,521 - 162,740,471 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11162,834,997 - 162,835,948 (-)NCBI
Celera1157,301,766 - 157,302,716 (-)NCBICelera
Cytogenetic Map1q32NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Genome sequence of the Brown Norway rat yields insights into mammalian evolution. Gibbs RA, etal., Nature 2004 Apr 1;428(6982):493-521.
3. GOA pipeline RGD automated data pipeline
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data
Or52e8
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81168,772,296 - 168,773,246 (-)NCBIGRCr8
mRatBN7.21159,360,430 - 159,361,380 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1159,360,430 - 159,361,380 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1167,353,027 - 167,353,977 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01174,538,940 - 174,539,890 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01167,425,259 - 167,426,209 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01169,855,777 - 169,856,727 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1169,855,777 - 169,856,727 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01176,868,262 - 176,869,212 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41162,739,521 - 162,740,471 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11162,834,997 - 162,835,948 (-)NCBI
Celera1157,301,766 - 157,302,716 (-)NCBICelera
Cytogenetic Map1q32NCBI
OR52E8
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38115,856,749 - 5,857,690 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl115,856,749 - 5,857,690 (-)EnsemblGRCh38hg38GRCh38
GRCh37115,877,979 - 5,878,920 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36115,834,555 - 5,835,508 (-)NCBINCBI36Build 36hg18NCBI36
Build 34115,834,554 - 5,835,508NCBI
Celera115,997,069 - 5,998,022 (-)NCBICelera
Cytogenetic Map11p15.4NCBI
HuRef115,537,502 - 5,538,454 (-)NCBIHuRef
CHM1_1115,876,916 - 5,877,868 (-)NCBICHM1_1
T2T-CHM13v2.0115,912,809 - 5,915,649 (-)NCBIT2T-CHM13v2.0
Or52e8
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm397104,621,683 - 104,625,202 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl7104,622,103 - 104,628,333 (-)EnsemblGRCm39 Ensembl
GRCm387104,972,476 - 104,975,995 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl7104,972,896 - 104,979,126 (-)EnsemblGRCm38mm10GRCm38
MGSCv377112,123,556 - 112,124,497 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv367104,848,863 - 104,849,804 (-)NCBIMGSCv36mm8
Celera7105,250,189 - 105,251,130 (-)NCBICelera
Cytogenetic Map7E3NCBI
cM Map755.71NCBI
LOC100511826
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.194,403,656 - 4,404,820 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.295,015,786 - 5,016,714 (+)NCBISscrofa10.2Sscrofa10.2susScr3

Variants

.
Variants in Or52e8
4 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:114
Count of miRNA genes:95
Interacting mature miRNAs:101
Transcripts:ENSRNOT00000047978
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.