Or4b1d (olfactory receptor family 4 subfamily B member 1D) - Rat Genome Database

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Gene: Or4b1d (olfactory receptor family 4 subfamily B member 1D) Rattus norvegicus
Analyze
No known orthologs.
Symbol: Or4b1d
Name: olfactory receptor family 4 subfamily B member 1D
RGD ID: 1334287
Description: Predicted to enable olfactory receptor activity. Predicted to be involved in G protein-coupled receptor signaling pathway and detection of chemical stimulus involved in sensory perception of smell. Predicted to be located in membrane. Predicted to be active in plasma membrane; INTERACTS WITH ammonium chloride; candesartan; Muraglitazar.
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: odorant receptor; olfactory receptor 737; olfactory receptor gene Olr737; olfactory receptor Olr737; Olr737; tpcr09
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8396,663,710 - 96,664,636 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl396,663,710 - 96,664,636 (-)EnsemblGRCr8
mRatBN7.2376,207,843 - 76,208,769 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl376,207,843 - 76,208,769 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx379,699,164 - 79,700,090 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0388,297,697 - 88,298,623 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0386,141,925 - 86,142,851 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0379,050,177 - 79,051,103 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl379,050,177 - 79,051,103 (-)Ensemblrn6Rnor6.0
Rnor_5.0385,764,826 - 85,765,752 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4374,612,307 - 74,613,233 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera375,450,043 - 75,450,969 (-)NCBICelera
RGSC_v3.1374,508,678 - 74,509,605 (-)NCBI
Cytogenetic Map3q24NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
membrane  (IEA)
plasma membrane  (IBA,IEA)

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Genome sequence of the Brown Norway rat yields insights into mammalian evolution. Gibbs RA, etal., Nature 2004 Apr 1;428(6982):493-521.
3. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
4. GOA pipeline RGD automated data pipeline
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:9119360   PMID:11014824  


Genomics

Variants

.
Variants in Or4b1d
8 total Variants

QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300178Hrtrt4Heart rate QTL 43.74heart pumping trait (VT:2000009)heart rate (CMO:0000002)351490129111359995Rat
1358293Bw38Body weight QTL 3860.0000031body mass (VT:0001259)body weight (CMO:0000012)374364268119364268Rat
61377Edpm3Estrogen-dependent pituitary mass QTL 37.050.038pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)373592611110333156Rat
2301414Kidm37Kidney mass QTL 370.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)396509147141509147Rat
1582238Bw68Body weight QTL 683.20.0064body mass (VT:0001259)body weight (CMO:0000012)373592512136118980Rat
1582239Epfw1Epididymal fat weight QTL 14.50.0006epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)373592512136118980Rat
70216Cm14Cardiac mass QTL 142.1heart mass (VT:0007028)heart wet weight (CMO:0000069)351581665184004958Rat
1354589Bw31Body weight QTL 313.3body mass (VT:0001259)body weight (CMO:0000012)35365182698651826Rat
2298542Neuinf11Neuroinflammation QTL 113.9nervous system integrity trait (VT:0010566)spinal cord complement component 1, q subcomponent, B chain mRNA level (CMO:0002126)33540319997383526Rat
2292591Esta4Estrogen-induced thymic atrophy QTL 4thymus mass (VT:0004954)thymus wet weight (CMO:0000855)367641776167835660Rat
1358362Srcrt2Stress Responsive Cort QTL 22.78blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)358601291153936591Rat
737818Hcar12Hepatocarcinoma resistance QTL 122.6liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)349872657138829559Rat
1582218Bw74Body weight QTL 743.90.0021body mass (VT:0001259)body weight (CMO:0000012)373592512136118980Rat
1582221Kidm30Kidney mass QTL 303.50.0008kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)385062224136118980Rat
1582210Bw71Body weight QTL 713.30.0012body mass (VT:0001259)body weight (CMO:0000012)385062224136118980Rat
1300111Rf12Renal function QTL 123.78renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)381425008141509147Rat
724523Tsu1Thymus enlargement suppressive QTL 13.84thymus mass (VT:0004954)thymus weight to body weight ratio (CMO:0000612)370845569136091483Rat
1600376Arunc5Aerobic running capacity QTL 50.21exercise endurance trait (VT:0002332)longest distance run on treadmill (CMO:0001406)393829559138829559Rat
8662816Vetf4Vascular elastic tissue fragility QTL 44renal artery integrity trait (VT:0010642)number of ruptures of the internal elastic lamina of the renal arteries (CMO:0002563)379649560177741895Rat
1581503Cm58Cardiac mass QTL 582.70.05heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)396509147141509147Rat
2292613Ept16Estrogen-induced pituitary tumorigenesis QTL 168.3pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)367641995130815812Rat
738019Anxrr10Anxiety related response QTL 103.9exploratory behavior trait (VT:0010471)number of entries into a discrete space in an experimental apparatus (CMO:0000960)358925062103925062Rat
631841Niddm39Non-insulin dependent diabetes mellitus QTL 393.36blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)370311536115311536Rat
631200Cm25Cardiac mass QTL 254.80.0001heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)381541464126563126Rat
12879848Bw181Body weght QTL 1810.015body mass (VT:0001259)body weight (CMO:0000012)390755164141509147Rat
1358905Hrtrt17Heart rate QTL 175.90.000014heart pumping trait (VT:2000009)heart rate (CMO:0000002)336721849110333156Rat
1354597Kidm13Kidney mass QTL 132.9kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)342158111124558371Rat
1358885Bp251Blood pressure QTL 2513.8arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)31141509147Rat
1354604Bw36Body weight QTL 362.9body mass (VT:0001259)body weight (CMO:0000012)342158111124558371Rat
1358888Bp264Blood pressure QTL 2644.43arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)35675975141509147Rat
1358186Ept2Estrogen-induced pituitary tumorigenesis QTL 28.3pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)367641995130815812Rat


Expression

RNA-SEQ Expression

appendage
ectoderm
endoderm
mesenchyme
nervous system
renal system
reproductive system
respiratory system
1 9 1 3 9 2 13 1

Sequence


Ensembl Acc Id: ENSRNOT00000088256   ⟹   ENSRNOP00000071069
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl396,663,710 - 96,664,636 (-)Ensembl
mRatBN7.2 Ensembl376,207,843 - 76,208,769 (-)Ensembl
Rnor_6.0 Ensembl379,050,177 - 79,051,103 (-)Ensembl
RefSeq Acc Id: NM_001000616   ⟹   NP_001000616
RefSeq Status: REVIEWED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8396,663,710 - 96,664,636 (-)NCBI
mRatBN7.2376,207,843 - 76,208,769 (-)NCBI
Rnor_6.0379,050,177 - 79,051,103 (-)NCBI
Rnor_5.0385,764,826 - 85,765,752 (-)NCBI
RGSC_v3.4374,612,307 - 74,613,233 (-)RGD
Celera375,450,043 - 75,450,969 (-)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_001000616 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAG21323 (Get FASTA)   NCBI Sequence Viewer  
  CAA61845 (Get FASTA)   NCBI Sequence Viewer  
  EDL79461 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000071069
  ENSRNOP00000071069.1
RefSeq Acc Id: NP_001000616   ⟸   NM_001000616
- UniProtKB: A0A0G2JZJ2 (UniProtKB/TrEMBL),   A6HN60 (UniProtKB/TrEMBL),   Q9ERX1 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000071069   ⟸   ENSRNOT00000088256
Protein Domains
G-protein coupled receptors family 1 profile

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A0G2JZJ2-F1-model_v2 AlphaFold A0A0G2JZJ2 1-308 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1334287 AgrOrtholog
BioCyc Gene G2FUF-48788 BioCyc
Ensembl Genes ENSRNOG00000052463 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000088256 ENTREZGENE
  ENSRNOT00000088256.2 UniProtKB/TrEMBL
Gene3D-CATH Rhodopsin 7-helix transmembrane proteins UniProtKB/TrEMBL
InterPro 7TM_GPCR_Rhodpsn UniProtKB/TrEMBL
  GPCR_Rhodpsn_supfam UniProtKB/TrEMBL
  Olfact_rcpt UniProtKB/TrEMBL
  Olfactory_Receptors UniProtKB/TrEMBL
KEGG Report rno:404808 UniProtKB/TrEMBL
NCBI Gene 404808 ENTREZGENE
PANTHER OLFACTORY RECEPTOR UniProtKB/TrEMBL
Pfam 7tm_4 UniProtKB/TrEMBL
PhenoGen Or4b1d PhenoGen
PRINTS GPCRRHODOPSN UniProtKB/TrEMBL
  OLFACTORYR UniProtKB/TrEMBL
PROSITE G_PROTEIN_RECEP_F1_1 UniProtKB/TrEMBL
  G_PROTEIN_RECEP_F1_2 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000052463 RatGTEx
Superfamily-SCOP Family A G protein-coupled receptor-like UniProtKB/TrEMBL
UniProt A0A0G2JZJ2 ENTREZGENE, UniProtKB/TrEMBL
  A6HN60 ENTREZGENE, UniProtKB/TrEMBL
  Q9ERX1 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-08-16 Or4b1d  olfactory receptor family 4 subfamily B member 1D  Olr737  olfactory receptor 737  Symbol and Name Changed 1299863 APPROVED
2005-12-06 Olr737  olfactory receptor 737  Olr737_predicted  olfactory receptor 737 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-02-04 Olr737_predicted  olfactory receptor 737 (predicted)      Symbol and Name status set to approved 70820 APPROVED