Slc4a4 (solute carrier family 4 (anion exchanger), member 4) - Rat Genome Database

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Gene: Slc4a4 (solute carrier family 4 (anion exchanger), member 4) Mus musculus
Analyze
Symbol: Slc4a4
Name: solute carrier family 4 (anion exchanger), member 4
RGD ID: 1332483
MGI Page MGI
Description: Enables sodium:bicarbonate symporter activity. Involved in regulation of intracellular pH. Acts upstream of or within bicarbonate transport; establishment of localization in cell; and sodium ion transport. Located in basolateral plasma membrane. Is expressed in several structures, including brain; metanephros; spinal cord floor plate; and thyroid primordium. Used to study renal tubular acidosis. Human ortholog(s) of this gene implicated in renal tubular acidosis. Orthologous to human SLC4A4 (solute carrier family 4 member 4).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: AI835705; electrogenic sodium bicarbonate cotransporter 1; electrogenic sodium bicarbonate cotransporter NBCe1 variant D; MGC171146; Na(+)/HCO3(-) cotransporter; NB; NBC; NBC1; pancreas sodium bicarbonate cotransporter; sodium bicarbonate cotransporter; solute carrier family 4 member 4; solute carrier family 4, sodium bicarbonate cotransporter, member 4
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39588,941,717 - 89,387,515 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl589,034,345 - 89,387,512 (+)EnsemblGRCm39 Ensembl
GRCm38588,793,858 - 89,239,656 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl588,886,486 - 89,239,653 (+)EnsemblGRCm38mm10GRCm38
GRCm38.p6 Ensembl588,886,818 - 89,239,653 (+)EnsemblGRCm38mm10GRCm38
MGSCv37589,316,285 - 89,668,681 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36590,009,308 - 90,310,099 (+)NCBIMGSCv36mm8
Celera587,083,219 - 87,378,244 (+)NCBICelera
Cytogenetic Map5E1NCBI
cM Map544.1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(1->4)-beta-D-glucan  (EXP)
1,2-dichloroethane  (EXP)
1,2-dimethylhydrazine  (EXP)
1-naphthyl isothiocyanate  (ISO)
17beta-estradiol  (EXP,ISO)
17beta-estradiol 3-benzoate  (ISO)
17beta-hydroxy-5alpha-androstan-3-one  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (ISO)
2,4,6-trinitrobenzenesulfonic acid  (EXP)
2,4-dinitrotoluene  (ISO)
2-amino-2-deoxy-D-glucopyranose  (ISO)
3,4-methylenedioxymethamphetamine  (EXP,ISO)
3-isobutyl-1-methyl-7H-xanthine  (EXP)
4,4'-diaminodiphenylmethane  (EXP,ISO)
4,4'-diisothiocyano-trans-stilbene-2,2'-disulfonic acid  (ISO)
4-amino-2,6-dinitrotoluene  (ISO)
4-hydroxyphenyl retinamide  (EXP)
6-propyl-2-thiouracil  (ISO)
acetamide  (ISO)
acrylamide  (ISO)
aflatoxin B1  (EXP,ISO)
aflatoxin M1  (ISO)
aldehydo-D-glucosamine  (ISO)
all-trans-retinoic acid  (ISO)
allethrin  (ISO)
amiodarone  (EXP)
amitrole  (ISO)
ammonium chloride  (ISO)
amphetamine  (ISO)
aristolochic acid A  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
atrazine  (ISO)
benzo[a]pyrene  (EXP,ISO)
beta-D-glucosamine  (ISO)
bicalutamide  (ISO)
bisphenol A  (EXP,ISO)
bromobenzene  (ISO)
butanal  (ISO)
cadmium dichloride  (ISO)
cefaloridine  (ISO)
CGP 52608  (ISO)
chloroprene  (EXP)
ciprofibrate  (EXP)
cocaine  (ISO)
Cuprizon  (ISO)
cyclosporin A  (EXP,ISO)
cyhalothrin  (ISO)
cypermethrin  (ISO)
dexamethasone  (EXP)
diclofenac  (EXP)
dioxygen  (EXP)
doxorubicin  (ISO)
elemental selenium  (ISO)
endosulfan  (ISO)
ethanol  (EXP)
fenvalerate  (ISO)
flavonoids  (ISO)
flutamide  (ISO)
folic acid  (EXP)
FR900359  (ISO)
fulvestrant  (ISO)
gamma-hexachlorocyclohexane  (ISO)
geneticin  (ISO)
gentamycin  (ISO)
leflunomide  (ISO)
methimazole  (ISO)
monosodium L-glutamate  (ISO)
Muraglitazar  (ISO)
N-nitrosodiethylamine  (EXP)
N-nitrosodimethylamine  (ISO)
N-nitrosomorpholine  (ISO)
N-Nitrosopyrrolidine  (ISO)
nickel sulfate  (ISO)
nitroglycerin  (ISO)
O-methyleugenol  (ISO)
paracetamol  (EXP,ISO)
pentachlorophenol  (EXP)
perfluorooctane-1-sulfonic acid  (EXP)
perfluorooctanoic acid  (ISO)
phenformin  (ISO)
phenobarbital  (EXP,ISO)
pirinixic acid  (EXP,ISO)
pregnenolone 16alpha-carbonitrile  (EXP,ISO)
pyrethrins  (ISO)
rotenone  (ISO)
selenium atom  (ISO)
silicon dioxide  (EXP,ISO)
sodium arsenate  (EXP)
sodium arsenite  (EXP,ISO)
sodium atom  (ISO)
sodium hydrogencarbonate  (ISO)
sulfadimethoxine  (ISO)
temozolomide  (ISO)
Tesaglitazar  (ISO)
testosterone  (ISO)
tetrachloromethane  (EXP,ISO)
trichostatin A  (ISO)
triclosan  (ISO)
triptonide  (EXP)
tunicamycin  (EXP)
valproic acid  (EXP,ISO)
venlafaxine hydrochloride  (ISO)
vinclozolin  (ISO)
vitamin E  (ISO)
zoledronic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
basolateral plasma membrane  (IBA,IDA,ISO)
cell surface  (ISO)
membrane  (ISO)
plasma membrane  (IBA,ISO,TAS)

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
abnormal ammonia homeostasis  (IAGP)
abnormal blood circulation  (IAGP)
abnormal blood homeostasis  (IAGP)
abnormal compact bone morphology  (IAGP)
abnormal cranium morphology  (IAGP)
abnormal intestine morphology  (IAGP)
abnormal intestine physiology  (IAGP)
abnormal ion homeostasis  (IAGP)
abnormal megakaryocyte morphology  (IAGP)
abnormal renal reabsorption  (IAGP)
abnormal renal tubule epithelium morphology  (IAGP)
abnormal skeleton morphology  (IAGP)
abnormal urine homeostasis  (IAGP)
acidemia  (IAGP)
acidosis  (IAGP)
anemia  (IAGP)
brittle teeth  (IAGP)
cachexia  (IAGP)
coiled cecum  (IAGP)
constipation  (IAGP)
corneal opacity  (IAGP)
decreased birth body size  (IAGP)
decreased body size  (IAGP)
decreased body weight  (IAGP)
decreased circulating bicarbonate level  (IAGP)
decreased circulating sodium level  (IAGP)
decreased gastrocnemius weight  (IAGP)
decreased hematocrit  (IAGP)
decreased hemoglobin content  (IAGP)
decreased kidney weight  (IAGP)
decreased length of long bones  (IAGP)
decreased lymphocyte cell number  (IAGP)
decreased urine ammonia level  (IAGP)
decreased urine osmolality  (IAGP)
decreased urine pH  (IAGP)
dilated kidney collecting duct  (IAGP)
dilated renal tubule  (IAGP)
disorganized spleen B cell follicle  (IAGP)
edema  (IAGP)
enlarged spleen  (IAGP)
increased circulating aldosterone level  (IAGP)
increased circulating calcium level  (IAGP)
increased circulating renin level  (IAGP)
increased long bone epiphyseal plate size  (IAGP)
increased nucleated erythrocyte cell number  (IAGP)
increased spleen red pulp amount  (IAGP)
increased spleen weight  (IAGP)
increased spleen white pulp amount  (IAGP)
increased urine calcium level  (IAGP)
increased urine sodium level  (IAGP)
intestinal obstruction  (IAGP)
metabolic acidosis  (IAGP)
pallor  (IAGP)
postnatal growth retardation  (IAGP)
postnatal lethality, complete penetrance  (IAGP)
renal tubular acidosis  (IAGP)
renal tubule atrophy  (IAGP)
reticulocytosis  (IAGP)
small cecum  (IAGP)
uremia  (IAGP)
References

References - curated
# Reference Title Reference Citation
1. Mutations in SLC4A4 cause permanent isolated proximal renal tubular acidosis with ocular abnormalities. Igarashi T, etal., Nat Genet 1999 Nov;23(3):264-6.
2. Altered expression of renal acid-base transporters in rats with lithium-induced NDI. Kim YH, etal., Am J Physiol Renal Physiol. 2003 Dec;285(6):F1244-57. Epub 2003 Aug 26.
3. Identification of key genes and pathways associated with cholangiocarcinoma development based on weighted gene correlation network analysis. Liu J, etal., PeerJ. 2019 Oct 31;7:e7968. doi: 10.7717/peerj.7968. eCollection 2019.
4. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
5. MGDs mouse GO annotations MGD data from the GO Consortium
6. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
7. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
8. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
9. Mouse MP Annotation Import Pipeline RGD automated import pipeline
10. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
11. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
12. Increased expression of the sodium transporter BSC-1 in spontaneously hypertensive rats. Sonalker PA, etal., J Pharmacol Exp Ther. 2004 Dec;311(3):1052-61. Epub 2004 Aug 30.
Additional References at PubMed
PMID:8889548   PMID:9651366   PMID:10349636   PMID:11042159   PMID:11076861   PMID:11171615   PMID:11217851   PMID:12388213   PMID:12477932   PMID:12727194   PMID:14567693   PMID:15218065  
PMID:15489334   PMID:16141072   PMID:16141073   PMID:16472605   PMID:16602821   PMID:16769890   PMID:17151600   PMID:17192275   PMID:17433553   PMID:17712176   PMID:18362326   PMID:18658147  
PMID:18973680   PMID:19033647   PMID:19779011   PMID:20529845   PMID:21228764   PMID:21267068   PMID:21317537   PMID:21600280   PMID:21873635   PMID:21909369   PMID:21924257   PMID:21976511  
PMID:23583738   PMID:24453308   PMID:24642792   PMID:24828138   PMID:25012520   PMID:25755028   PMID:25820238   PMID:25990710   PMID:26224717   PMID:26514267   PMID:27117802   PMID:27798130  
PMID:27889896   PMID:28568893   PMID:28671696   PMID:29111324   PMID:29378955   PMID:29483156   PMID:29631353   PMID:30013481   PMID:30132845   PMID:30208253   PMID:30344957   PMID:31040187  
PMID:31318482   PMID:31841393   PMID:32119862   PMID:32173470   PMID:32325033   PMID:32761631   PMID:33033238   PMID:33112159   PMID:33942325   PMID:34633730   PMID:35001662   PMID:35635440  
PMID:35831953   PMID:36264886   PMID:36417873   PMID:36522548   PMID:36808153   PMID:37384821   PMID:37471646   PMID:38067105   PMID:38187761  


Genomics

Comparative Map Data
Slc4a4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39588,941,717 - 89,387,515 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl589,034,345 - 89,387,512 (+)EnsemblGRCm39 Ensembl
GRCm38588,793,858 - 89,239,656 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl588,886,486 - 89,239,653 (+)EnsemblGRCm38mm10GRCm38
GRCm38.p6 Ensembl588,886,818 - 89,239,653 (+)EnsemblGRCm38mm10GRCm38
MGSCv37589,316,285 - 89,668,681 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36590,009,308 - 90,310,099 (+)NCBIMGSCv36mm8
Celera587,083,219 - 87,378,244 (+)NCBICelera
Cytogenetic Map5E1NCBI
cM Map544.1NCBI
SLC4A4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38471,062,660 - 71,572,083 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl471,062,667 - 71,572,087 (+)EnsemblGRCh38hg38GRCh38
GRCh37472,052,482 - 72,437,800 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36472,271,867 - 72,656,663 (+)NCBINCBI36Build 36hg18NCBI36
Build 34472,569,851 - 72,802,834NCBI
Celera469,409,858 - 69,794,385 (+)NCBICelera
Cytogenetic Map4q13.3NCBI
HuRef467,858,038 - 68,243,033 (+)NCBIHuRef
CHM1_1472,088,838 - 72,473,646 (+)NCBICHM1_1
T2T-CHM13v2.0474,404,936 - 74,914,352 (+)NCBIT2T-CHM13v2.0
Slc4a4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81419,125,394 - 19,577,379 (-)NCBIGRCr8
mRatBN7.21418,841,289 - 19,293,297 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1418,845,159 - 19,272,883 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1418,835,659 - 19,168,521 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01420,154,535 - 20,487,378 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01418,866,264 - 19,200,389 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01420,476,258 - 20,817,042 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1420,479,323 - 20,920,286 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01420,382,241 - 20,803,426 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41420,381,545 - 20,739,216 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11420,381,544 - 20,739,216 (-)NCBI
Celera1418,198,665 - 18,528,992 (-)NCBICelera
Cytogenetic Map14p22NCBI
Slc4a4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554471,599,929 - 1,900,791 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554471,599,986 - 1,900,791 (-)NCBIChiLan1.0ChiLan1.0
SLC4A4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2358,518,761 - 58,902,521 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1458,714,895 - 59,097,574 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0452,659,221 - 52,994,053 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1459,002,200 - 59,337,558 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl459,002,200 - 59,385,608 (-)Ensemblpanpan1.1panPan2
SLC4A4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11360,375,215 - 60,670,664 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1360,328,136 - 60,666,728 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1360,062,119 - 60,404,847 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01361,134,685 - 61,478,360 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1361,054,824 - 61,475,687 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11360,748,991 - 61,092,136 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01360,240,742 - 60,583,813 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01361,388,701 - 61,732,082 (+)NCBIUU_Cfam_GSD_1.0
Slc4a4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440528514,940,952 - 15,261,596 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365983,391,575 - 3,713,635 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365983,391,587 - 3,713,629 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC4A4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl867,706,874 - 68,177,212 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1867,768,955 - 68,177,213 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2871,840,687 - 72,050,150 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SLC4A4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1719,581,399 - 20,043,334 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660842,813,860 - 3,204,408 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Slc4a4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248902,523,327 - 2,919,148 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248902,523,368 - 2,940,081 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Slc4a4
14084 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:2983
Count of miRNA genes:908
Interacting mature miRNAs:1276
Transcripts:ENSMUST00000113216, ENSMUST00000113218, ENSMUST00000130041, ENSMUST00000134303, ENSMUST00000135283, ENSMUST00000144713, ENSMUST00000148750, ENSMUST00000156238
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
11341716Rvfs3_mRift Valley fever susceptibility 3 (mouse)526441234138455402Mouse
4140990Lgq6_mlate growth QTL 6 (mouse)Not determined32133234100777931Mouse
4141219W10q16_mweight 10 weeks QTL 16 (mouse)Not determined32133234100777931Mouse
1301524Lmb2_mlupus in MRL and B6 F2 cross (mouse)Not determined537581488112465722Mouse
11041665Lmr24_mleishmaniasis resistance 24 (mouse)552694462107321041Mouse
11041899Lmr24a_mleishmaniasis resistance 24a (mouse)552694462107321041Mouse
4142064Tmc1m4_mTmc1 modifier 4 (mouse)Not determined554500177127001072Mouse
1301243Bmd2_mbone mineral density 2 (mouse)Not determined555388334100455525Mouse
4142317Rgcs1_mretinal ganglion cell susceptible 1 (mouse)Not determined55388334108762627Mouse
13464248Ahl13_mage related hearing loss, early onset 13 (mouse)55564587489645995Mouse
10043962Obq27_mobesity QTL 27 (mouse)Not determined55628565590285655Mouse
10044005Ahl7_mage related hearing loss 7 (mouse)Not determined55833050292330641Mouse
11040591Lmr3c_mleishmaniasis resistance 3c (mouse)55960280193602980Mouse
11040592Lmr3d_mleishmaniasis resistance 3d (mouse)55960280193602980Mouse
11040589Lmr3a_mleishmaniasis resistance 3a (mouse)55960280193602980Mouse
11040590Lmr3b_mleishmaniasis resistance 3b (mouse)55960280193602980Mouse
1301843Listr1_mlisteriosis resistance 1 (mouse)Not determined56024608194246203Mouse
13464247Ahl14_mage related hearing loss, early onset 14 (mouse)56040306294403160Mouse
11252124Modvl6_mmodifier of vacuolated lens 6 (mouse)56265056896650688Mouse
4142428Modvl1_mmodifier of vacuolated lens 1 (mouse)Not determined6265056896650688Mouse
1301010ahl2_mage related hearing loss 2 (mouse)Not determined56265056896650688Mouse
13464250Ahl15_mage related hearing loss, early onset 15 (mouse)56265056896650688Mouse
10045972Tir5_mtrypanosome infection response 5 (mouse)Not determined563705442104387065Mouse
11049560Lmr24d_mleishmaniasis resistance 24d (mouse)56437487798374996Mouse
12904739M2fscn2_mmodifier 2 of FSCN2 (mouse)566529661100529661Mouse
12904740M1fscn2_mmodifier 1 of Fscn2 (mouse)566529661100529661Mouse
26884395Humsd2_mhumerus midshaft diameter 2, 10 week (mouse)570057343132528839Mouse
10043993Hbnr10_mHeligmosomoides bakeri nematode resistance 10 (mouse)Not determined572418876106419011Mouse
27226719Tibw6_mtibia width 6, proximal, 16 week (mouse)572857343139985755Mouse
25314315Mlh1fc4_mMLH1 foci count 4 (mouse)574460661132528839Mouse
13506928Recrq8_mrecombination rate in male meiosis QTL 8 (mouse)574460661132528839Mouse
4141124Dshv2_mdorsal hippocampal volume 2 (mouse)Not determined57531534898019803Mouse
1357431Cia27_mcollagen induced arthritis 27 (mouse)Not determined575315348120018629Mouse
4141438Skmw13_mskeletal muscle weight 13 (mouse)Not determined576190263110190479Mouse
4141505Chlq14_mcirculating hormone level QTL 14 (mouse)Not determined576280786110280917Mouse
1300986Hdlq2_mHDL QTL 2 (mouse)Not determined576280786110280917Mouse
1301691Cdcs10_mcytokine deficiency colitis susceptibility 10 (mouse)Not determined576280786110280917Mouse
1301829Thyls2_mthymic lymphoma susceptibility 2 (mouse)Not determined576445064110445225Mouse
1301713Dbsty2_mdiabesity 2 (mouse)Not determined576445064110445225Mouse
13464249Ahl16_mage related hearing loss, early onset 16 (mouse)576445064110445225Mouse
1300931Cocrb6_mcocaine related behavior 6 (mouse)Not determined576445064110445225Mouse
12910784Pwgrq15_mpost-weaning growth rate QTL 15 (mouse)57717582397658215Mouse
12910816Ogrq2_moverall growth rate QTL 2 (mouse)57717582397658215Mouse
10401246Bglu13_mblood glucose level 13 (mouse)Not determined579539640113539786Mouse
10755524Mono1_mmonocyte differential 1 (mouse)580849259114849259Mouse
1301419Cypr3_mcytokine production 3 (mouse)Not determined581019649115019803Mouse
10401245Bglu18_mblood glucose level 18 (mouse)Not determined582838468116838597Mouse
13464242Ahl17_mage related hearing loss, early onset 17 (mouse)582838468116838597Mouse
12738408Lfibq5_mliver fibrosis QTL 5 (mouse)58478385389966041Mouse
10043958Chldq12_mcholesterol and HDL QTL 12 (mouse)Not determined587386871121387065Mouse
1301126Bwem1_mbody weight day 30 males 1 (mouse)Not determined587386871121387065Mouse
13464241Ahl18_mage related hearing loss, early onset 18 (mouse)587386871121387065Mouse
1300801Drb2_mdopamine receptor binding 2 (mouse)Not determined587386871121387065Mouse
1301399Cpfd3_mcerebellum pattern fissures (mouse)Not determined587386871121387065Mouse

Markers in Region
D5Mit274  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38589,198,911 - 89,199,011UniSTSGRCm38
MGSCv37589,627,936 - 89,628,036UniSTSGRCm37
Cytogenetic Map5E2UniSTS
cM Map545.0UniSTS
Whitehead Genetic532.8UniSTS
Whitehead/MRC_RH51118.8UniSTS
D5Mit311  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38589,050,781 - 89,050,899UniSTSGRCm38
MGSCv37589,479,806 - 89,479,924UniSTSGRCm37
Celera587,194,811 - 87,194,929UniSTS
Cytogenetic Map5E2UniSTS
cM Map545.0UniSTS
Whitehead Genetic532.8UniSTS
Whitehead_YAC5 UniSTS
D5Mit40  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38588,947,265 - 88,947,451UniSTSGRCm38
MGSCv37589,376,290 - 89,376,476UniSTSGRCm37
Celera587,095,787 - 87,095,969UniSTS
Cytogenetic Map5E2UniSTS
cM Map545.0UniSTS
Whitehead Genetic532.8UniSTS
Whitehead_YAC5 UniSTS
AI835705  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38589,239,259 - 89,239,349UniSTSGRCm38
MGSCv37589,668,284 - 89,668,374UniSTSGRCm37
Celera587,377,847 - 87,377,937UniSTS
Cytogenetic Map5E2UniSTS
Whitehead/MRC_RH51118.9UniSTS
AI176955  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38589,236,020 - 89,236,154UniSTSGRCm38
MGSCv37589,665,045 - 89,665,179UniSTSGRCm37
Celera587,374,605 - 87,374,739UniSTS
Cytogenetic Map5E2UniSTS
D5Mit17  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38588,947,303 - 88,947,418UniSTSGRCm38
MGSCv37589,376,328 - 89,376,443UniSTSGRCm37
Celera587,095,825 - 87,095,936UniSTS
Cytogenetic Map5E2UniSTS
cM Map545.0UniSTS
Whitehead Genetic532.8UniSTS
Whitehead_YAC5 UniSTS
AW527043  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38589,040,968 - 89,041,059UniSTSGRCm38
MGSCv37589,469,993 - 89,470,084UniSTSGRCm37
Celera587,185,002 - 87,185,093UniSTS
Cytogenetic Map5E2UniSTS
Slc4a4  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map5E2UniSTS
cM Map544.1UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001136260 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001197147 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001359211 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001359212 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001359213 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_018760 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006535136 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011249542 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017320995 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030254704 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030254705 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036165313 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC140492 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC160533 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC162690 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC165240 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF020195 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF141934 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK042933 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK085387 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK134619 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK140443 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK163619 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK165444 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AW124701 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC020415 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC026592 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC031756 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC049236 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC129863 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC129864 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC148292 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BF460877 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CB524421 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CD364018 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CF744823 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466617 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HQ018820 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HQ204220 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HQ285250 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X81587 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSMUST00000113216   ⟹   ENSMUSP00000108842
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl589,175,936 - 89,190,221 (+)Ensembl
GRCm38.p6 Ensembl589,028,077 - 89,042,362 (+)Ensembl
RefSeq Acc Id: ENSMUST00000113218   ⟹   ENSMUSP00000108844
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl589,035,156 - 89,382,726 (+)Ensembl
GRCm38.p6 Ensembl588,887,297 - 89,234,867 (+)Ensembl
RefSeq Acc Id: ENSMUST00000130041   ⟹   ENSMUSP00000118413
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl589,175,825 - 89,382,720 (+)Ensembl
GRCm38.p6 Ensembl589,027,966 - 89,234,861 (+)Ensembl
RefSeq Acc Id: ENSMUST00000134303   ⟹   ENSMUSP00000119976
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl589,175,951 - 89,270,312 (+)Ensembl
GRCm38.p6 Ensembl589,028,092 - 89,122,453 (+)Ensembl
RefSeq Acc Id: ENSMUST00000135283
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl589,035,120 - 89,036,145 (+)Ensembl
GRCm38.p6 Ensembl588,887,261 - 88,888,286 (+)Ensembl
RefSeq Acc Id: ENSMUST00000144713   ⟹   ENSMUSP00000122975
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl589,082,391 - 89,102,806 (+)Ensembl
GRCm38.p6 Ensembl588,934,532 - 88,954,947 (+)Ensembl
RefSeq Acc Id: ENSMUST00000148750   ⟹   ENSMUSP00000119325
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl589,034,677 - 89,387,512 (+)Ensembl
GRCm38.p6 Ensembl588,886,818 - 89,239,653 (+)Ensembl
RefSeq Acc Id: ENSMUST00000156238   ⟹   ENSMUSP00000121744
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl589,035,158 - 89,383,653 (+)Ensembl
GRCm38.p6 Ensembl588,887,299 - 89,235,794 (+)Ensembl
RefSeq Acc Id: ENSMUST00000238265   ⟹   ENSMUSP00000158605
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl589,082,431 - 89,186,329 (+)Ensembl
GRCm38.p6 Ensembl588,934,572 - 89,038,470 (+)Ensembl
RefSeq Acc Id: ENSMUST00000239214   ⟹   ENSMUSP00000159229
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl589,034,345 - 89,382,735 (+)Ensembl
GRCm38.p6 Ensembl588,886,486 - 89,234,876 (+)Ensembl
RefSeq Acc Id: NM_001136260   ⟹   NP_001129732
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39589,035,119 - 89,387,515 (+)NCBI
GRCm38588,887,260 - 89,239,656 (+)NCBI
MGSCv37589,316,285 - 89,668,681 (+)RGD
Celera587,083,219 - 87,378,244 (+)RGD
cM Map5 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001197147   ⟹   NP_001184076
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39589,035,119 - 89,387,515 (+)NCBI
GRCm38588,887,260 - 89,239,656 (+)NCBI
Celera587,083,219 - 87,378,244 (+)ENTREZGENE
cM Map5 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001359211   ⟹   NP_001346140
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39589,035,119 - 89,387,515 (+)NCBI
GRCm38588,887,260 - 89,239,656 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001359212   ⟹   NP_001346141
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39589,175,825 - 89,387,515 (+)NCBI
GRCm38589,027,966 - 89,239,656 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001359213   ⟹   NP_001346142
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39589,175,825 - 89,387,515 (+)NCBI
GRCm38589,027,966 - 89,239,656 (+)NCBI
Sequence:
RefSeq Acc Id: NM_018760   ⟹   NP_061230
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39589,035,119 - 89,387,515 (+)NCBI
GRCm38588,887,260 - 89,239,656 (+)NCBI
MGSCv37589,316,285 - 89,668,681 (+)RGD
Celera587,083,219 - 87,378,244 (+)RGD
cM Map5 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006535136   ⟹   XP_006535199
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39589,034,583 - 89,387,512 (+)NCBI
GRCm38588,886,731 - 89,239,653 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011249542   ⟹   XP_011247844
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39589,082,608 - 89,387,512 (+)NCBI
GRCm38588,934,749 - 89,239,653 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017320995   ⟹   XP_017176484
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39588,941,721 - 89,387,512 (+)NCBI
GRCm38588,793,862 - 89,239,653 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030254704   ⟹   XP_030110564
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39588,941,717 - 89,387,512 (+)NCBI
GRCm38588,793,858 - 89,239,653 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030254705   ⟹   XP_030110565
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39589,034,583 - 89,387,512 (+)NCBI
GRCm38588,886,732 - 89,239,653 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036165313   ⟹   XP_036021206
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39589,035,335 - 89,387,512 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001129732 (Get FASTA)   NCBI Sequence Viewer  
  NP_001184076 (Get FASTA)   NCBI Sequence Viewer  
  NP_001346140 (Get FASTA)   NCBI Sequence Viewer  
  NP_001346141 (Get FASTA)   NCBI Sequence Viewer  
  NP_001346142 (Get FASTA)   NCBI Sequence Viewer  
  NP_061230 (Get FASTA)   NCBI Sequence Viewer  
  XP_006535199 (Get FASTA)   NCBI Sequence Viewer  
  XP_011247844 (Get FASTA)   NCBI Sequence Viewer  
  XP_017176484 (Get FASTA)   NCBI Sequence Viewer  
  XP_030110564 (Get FASTA)   NCBI Sequence Viewer  
  XP_030110565 (Get FASTA)   NCBI Sequence Viewer  
  XP_036021206 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAC40160 (Get FASTA)   NCBI Sequence Viewer  
  AAD31036 (Get FASTA)   NCBI Sequence Viewer  
  AAH26592 (Get FASTA)   NCBI Sequence Viewer  
  AAI29865 (Get FASTA)   NCBI Sequence Viewer  
  AAI48293 (Get FASTA)   NCBI Sequence Viewer  
  ADM25849 (Get FASTA)   NCBI Sequence Viewer  
  ADN95183 (Get FASTA)   NCBI Sequence Viewer  
  ADP37962 (Get FASTA)   NCBI Sequence Viewer  
  BAC39437 (Get FASTA)   NCBI Sequence Viewer  
  BAE24389 (Get FASTA)   NCBI Sequence Viewer  
  EDL05341 (Get FASTA)   NCBI Sequence Viewer  
  EDL05342 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000108842.3
  ENSMUSP00000108844
  ENSMUSP00000108844.4
  ENSMUSP00000118413
  ENSMUSP00000118413.2
  ENSMUSP00000119325
  ENSMUSP00000119325.2
  ENSMUSP00000119976.2
  ENSMUSP00000121744
  ENSMUSP00000121744.2
  ENSMUSP00000122975.2
  ENSMUSP00000158605.2
  ENSMUSP00000159229
  ENSMUSP00000159229.2
GenBank Protein O88343 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_061230   ⟸   NM_018760
- Peptide Label: isoform a
- UniProtKB: Q8QZR9 (UniProtKB/Swiss-Prot),   Q8BUG0 (UniProtKB/Swiss-Prot),   Q3USE4 (UniProtKB/Swiss-Prot),   Q9R1C4 (UniProtKB/Swiss-Prot),   O88343 (UniProtKB/Swiss-Prot),   A2VDF7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001129732   ⟸   NM_001136260
- Peptide Label: isoform b
- UniProtKB: A2VDF7 (UniProtKB/TrEMBL),   E9Q8N8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001184076   ⟸   NM_001197147
- Peptide Label: isoform c
- UniProtKB: A7E1Z5 (UniProtKB/TrEMBL),   A2VDF7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006535199   ⟸   XM_006535136
- Peptide Label: isoform X3
- UniProtKB: A2VDF7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011247844   ⟸   XM_011249542
- Peptide Label: isoform X1
- UniProtKB: A2VDF7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017176484   ⟸   XM_017320995
- Peptide Label: isoform X2
- UniProtKB: A2VDF7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_030110564   ⟸   XM_030254704
- Peptide Label: isoform X4
- UniProtKB: A2VDF7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_030110565   ⟸   XM_030254705
- Peptide Label: isoform X6
- UniProtKB: A2VDF7 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001346140   ⟸   NM_001359211
- Peptide Label: isoform d
- UniProtKB: A0A668KM61 (UniProtKB/TrEMBL),   A2VDF7 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001346141   ⟸   NM_001359212
- Peptide Label: isoform e
- UniProtKB: E1AWU4 (UniProtKB/TrEMBL),   A2VDF7 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001346142   ⟸   NM_001359213
- Peptide Label: isoform f
- UniProtKB: E3VWA1 (UniProtKB/TrEMBL),   A2VDF7 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSMUSP00000122975   ⟸   ENSMUST00000144713
RefSeq Acc Id: ENSMUSP00000118413   ⟸   ENSMUST00000130041
RefSeq Acc Id: ENSMUSP00000108842   ⟸   ENSMUST00000113216
RefSeq Acc Id: ENSMUSP00000108844   ⟸   ENSMUST00000113218
RefSeq Acc Id: ENSMUSP00000159229   ⟸   ENSMUST00000239214
RefSeq Acc Id: ENSMUSP00000158605   ⟸   ENSMUST00000238265
RefSeq Acc Id: ENSMUSP00000119325   ⟸   ENSMUST00000148750
RefSeq Acc Id: ENSMUSP00000119976   ⟸   ENSMUST00000134303
RefSeq Acc Id: ENSMUSP00000121744   ⟸   ENSMUST00000156238
RefSeq Acc Id: XP_036021206   ⟸   XM_036165313
- Peptide Label: isoform X5
- UniProtKB: E9Q8N8 (UniProtKB/TrEMBL),   A2VDF7 (UniProtKB/TrEMBL)
Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-O88343-F1-model_v2 AlphaFold O88343 1-1079 view protein structure

Promoters
RGD ID:6887094
Promoter ID:EPDNEW_M6998
Type:initiation region
Name:Slc4a4_1
Description:Mus musculus solute carrier family 4 , member 4 , transcriptvariant 6, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M6999  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38588,887,197 - 88,887,257EPDNEW
RGD ID:6887096
Promoter ID:EPDNEW_M6999
Type:multiple initiation site
Name:Slc4a4_2
Description:Mus musculus solute carrier family 4 , member 4 , transcriptvariant 6, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M6998  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38588,934,338 - 88,934,398EPDNEW
RGD ID:6838383
Promoter ID:MM_KWN:42811
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain,   Liver,   Lung
Transcripts:ENSMUST00000066831,   NM_001136260,   OTTMUST00000063776,   OTTMUST00000063780,   OTTMUST00000081633,   UC008YAJ.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36589,315,621 - 89,316,121 (+)MPROMDB
RGD ID:6838384
Promoter ID:MM_KWN:42812
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain
Transcripts:OTTMUST00000063781
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36589,362,891 - 89,363,391 (+)MPROMDB
RGD ID:6838382
Promoter ID:MM_KWN:42813
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain,   Kidney
Transcripts:OTTMUST00000063779,   OTTMUST00000081634,   UC008YAL.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36589,456,921 - 89,457,421 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1927555 AgrOrtholog
Ensembl Genes ENSMUSG00000060961 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000113216.9 UniProtKB/Swiss-Prot
  ENSMUST00000113218 ENTREZGENE
  ENSMUST00000113218.10 UniProtKB/TrEMBL
  ENSMUST00000130041 ENTREZGENE
  ENSMUST00000130041.8 UniProtKB/Swiss-Prot
  ENSMUST00000134303.2 UniProtKB/TrEMBL
  ENSMUST00000144713.2 UniProtKB/TrEMBL
  ENSMUST00000148750 ENTREZGENE
  ENSMUST00000148750.8 UniProtKB/Swiss-Prot
  ENSMUST00000156238 ENTREZGENE
  ENSMUST00000156238.8 UniProtKB/TrEMBL
  ENSMUST00000238265.2 UniProtKB/TrEMBL
  ENSMUST00000239214 ENTREZGENE
  ENSMUST00000239214.2 UniProtKB/TrEMBL
Gene3D-CATH Helical hairpin bin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Band3_cytoplasmic_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  HCO3_transpt_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  HCO3_transpt_euk UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Na/HCO3_transpt UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTrfase/Anion_transptr UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:54403 UniProtKB/Swiss-Prot
MGD MGI:1927555 ENTREZGENE
NCBI Gene 54403 ENTREZGENE
PANTHER ELECTROGENIC SODIUM BICARBONATE COTRANSPORTER 1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR11453 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Band_3_cyto UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  HCO3_cotransp UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Slc4a4 PhenoGen
PRINTS HCO3TRNSPORT UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  NAHCO3TRSPRT UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF55804 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A571BE55_MOUSE UniProtKB/TrEMBL
  A0A668KM61 ENTREZGENE, UniProtKB/TrEMBL
  A2VDF7 ENTREZGENE, UniProtKB/TrEMBL
  A7E1Z5 ENTREZGENE, UniProtKB/TrEMBL
  D3Z7G8_MOUSE UniProtKB/TrEMBL
  D3Z7I7_MOUSE UniProtKB/TrEMBL
  E1AWU4 ENTREZGENE, UniProtKB/TrEMBL
  E3VWA1 ENTREZGENE, UniProtKB/TrEMBL
  E9Q8N8 ENTREZGENE, UniProtKB/TrEMBL
  O88343 ENTREZGENE
  Q3USE4 ENTREZGENE
  Q8BUG0 ENTREZGENE
  Q8QZR9 ENTREZGENE
  Q9R1C4 ENTREZGENE
  S4A4_MOUSE UniProtKB/Swiss-Prot
UniProt Secondary Q3USE4 UniProtKB/Swiss-Prot
  Q8BUG0 UniProtKB/Swiss-Prot
  Q8QZR9 UniProtKB/Swiss-Prot
  Q9R1C4 UniProtKB/Swiss-Prot