Tmem163 (transmembrane protein 163)

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Gene: Tmem163 (transmembrane protein 163) Mus musculus

Analyze

Symbol:

Tmem163

Name:

transmembrane protein 163

RGD ID:

1332328

MGI Page

MGI

Description:

Predicted to enable zinc ion binding activity. Predicted to be involved in zinc ion import into synaptic vesicle. Located in synaptic vesicle membrane. Is active in intracellular vesicle and plasma membrane. Is expressed in cerebral cortex; cortical layer V; cortical subplate; heart; and limb. Orthologous to human TMEM163 (transmembrane protein 163).

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

2610024A01Rik; A-c; A-cre; Act-C; Act-Cre; actin; actin-cre; beta-actin-cre; cre; SV; SV31; synaptic vesicle membrane protein of 31 kDa; Tg(ACTB-cre)2Mrt; TgN(ACTB-cre)2Mrt

RGD Orthologs

Human

Rat

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	TMEM163 (transmembrane protein 163)	HGNC	EggNOG, Ensembl, HGNC, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Rattus norvegicus (Norway rat):	Tmem163 (transmembrane protein 163)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Tmem163 (transmembrane protein 163)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	TMEM163 (transmembrane protein 163)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	TMEM163 (transmembrane protein 163)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Tmem163 (transmembrane protein 163)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	TMEM163 (transmembrane protein 163)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	TMEM163 (transmembrane protein 163)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Tmem163 (transmembrane protein 163)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Rattus norvegicus (Norway rat):	Tmem163 (transmembrane protein 163)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	TMEM163 (transmembrane protein 163)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	tmem163b (transmembrane protein 163b)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|PANTHER\|PhylomeDB\|SonicParanoid\|ZFIN)
Danio rerio (zebrafish):	tmem163a (transmembrane protein 163a)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid\|ZFIN)
Xenopus tropicalis (tropical clawed frog):	tmem163	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)

Latest Assembly:

GRCm39 - Mouse Genome Assembly GRCm39

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	1	127,418,079 - 127,605,758 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	1	127,414,283 - 127,607,285 (-)	Ensembl		GRCm39 Ensembl
GRCm38	1	127,490,342 - 127,678,021 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	1	127,486,546 - 127,679,548 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	1	129,386,919 - 129,574,598 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	1	129,314,097 - 129,505,567 (-)	NCBI		MGSCv36	mm8
Celera	1	130,139,903 - 130,318,056 (-)	NCBI		Celera
Cytogenetic Map	1	E3	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

genetic disease (ISO)

Hypomyelinating Leukodystrophy 25 (ISO)

proteinuria (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(-)-demecolcine (ISO)

(1->4)-beta-D-glucan (EXP)

(S)-nicotine (EXP)

17beta-estradiol (ISO)

2,2',4,4',5,5'-hexachlorobiphenyl (EXP)

2,2',5,5'-tetrachlorobiphenyl (EXP)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

4,4'-sulfonyldiphenol (EXP,ISO)

aflatoxin B1 (ISO)

all-trans-retinoic acid (ISO)

amphetamine (ISO)

antirheumatic drug (ISO)

arsenous acid (ISO)

atrazine (ISO)

benzo[a]pyrene (EXP,ISO)

benzo[e]pyrene (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (ISO)

bisphenol F (ISO)

cadmium atom (ISO)

cadmium dichloride (ISO)

cefaloridine (ISO)

choline (EXP)

cisplatin (ISO)

cobalt dichloride (ISO)

cylindrospermopsin (ISO)

diarsenic trioxide (ISO)

dorsomorphin (ISO)

entinostat (ISO)

ethanol (EXP)

ethyl methanesulfonate (ISO)

folic acid (EXP)

formaldehyde (ISO)

furan (ISO)

genistein (EXP)

indole-3-methanol (ISO)

L-methionine (EXP)

mercury dibromide (ISO)

methapyrilene (ISO)

morphine (EXP)

nicotine (EXP)

p-chloromercuribenzoic acid (ISO)

panobinostat (ISO)

paracetamol (EXP,ISO)

PCB138 (EXP)

perfluorooctane-1-sulfonic acid (EXP)

phenylmercury acetate (ISO)

potassium bromate (ISO)

progesterone (ISO)

SB 431542 (ISO)

sodium dichromate (ISO)

sunitinib (ISO)

thioacetamide (ISO)

titanium dioxide (EXP)

trichloroethene (ISO)

triclosan (ISO)

valproic acid (ISO)

vincristine (ISO)

vorinostat (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

zinc ion import into synaptic vesicle (ISO)

Cellular Component

cytoplasmic vesicle (IEA)

early endosome membrane (ISO)

endosome (IEA)

intracellular vesicle (EXP)

membrane (IBA)

plasma membrane (EXP)

synapse (IEA)

synaptic vesicle membrane (IDA,ISO)

Molecular Function

protein binding (IPI)

zinc ion binding (IBA,ISO)

Phenotype Annotations Click to see Annotation Detail View

Mammalian Phenotype

abnormal anogenital distance (IAGP)

abnormal axon morphology (IAGP)

abnormal brain development (IAGP)

abnormal brain interneuron morphology (IAGP)

abnormal branching of the mammary ductal tree (IAGP)

abnormal breathing pattern (IAGP)

abnormal cartilage development (IAGP)

abnormal cartilage morphology (IAGP)

abnormal cerebral cortex morphology (IAGP)

abnormal chiasmata formation (IAGP)

abnormal circadian behavior (IAGP)

abnormal deltoid tuberosity morphology (IAGP)

abnormal external male genitalia morphology (IAGP)

abnormal eye morphology (IAGP)

abnormal fat cell morphology (IAGP)

abnormal female meiosis (IAGP)

abnormal female reproductive system morphology (IAGP)

abnormal forebrain morphology (IAGP)

abnormal forelimb morphology (IAGP)

abnormal granulosa cell morphology (IAGP)

abnormal habituation to a new environment (IAGP)

abnormal head development (IAGP)

abnormal heart echocardiography feature (IAGP)

abnormal hindbrain morphology (IAGP)

abnormal homeostasis (IAGP)

abnormal humerus morphology (IAGP)

abnormal kidney morphology (IEA)

abnormal lactation (IAGP)

abnormal long bone epiphyseal plate morphology (IAGP)

abnormal long bone epiphyseal plate proliferative zone (IAGP)

abnormal long bone metaphysis morphology (IAGP)

abnormal male reproductive system morphology (IAGP)

abnormal mammary gland morphology (IAGP)

abnormal myometrium morphology (IAGP)

abnormal neural tube morphology (IAGP)

abnormal nursing (IAGP)

abnormal oocyte morphology (IAGP)

abnormal ovary morphology (IAGP)

abnormal oxygen consumption (IAGP)

abnormal paranodal axoglial junction morphology (IAGP)

abnormal paranode morphology (IAGP)

abnormal placenta labyrinth morphology (IAGP)

abnormal placenta morphology (IAGP)

abnormal platelet physiology (IAGP)

abnormal polar body morphology (IAGP)

abnormal prostate gland branching morphogenesis (IAGP)

abnormal prostate gland physiology (IAGP)

abnormal reproductive system physiology (IAGP)

abnormal rib morphology (IAGP)

abnormal scapula morphology (IAGP)

abnormal scrotum morphology (IAGP)

abnormal seminiferous tubule morphology (IAGP)

abnormal Sertoli cell morphology (IAGP)

abnormal skeleton development (IAGP)

abnormal skeleton morphology (IAGP)

abnormal skin morphology (IEA)

abnormal somite development (IAGP)

abnormal spermatocyte morphology (IAGP)

abnormal spermatogonia morphology (IAGP)

abnormal spongiotrophoblast layer morphology (IAGP)

abnormal stellate ganglion morphology (IAGP)

abnormal striatum morphology (IAGP)

abnormal tail development (IAGP)

abnormal telencephalon development (IAGP)

abnormal trabecular bone morphology (IAGP)

abnormal vertebrae morphology (IAGP)

abnormal vitreous body morphology (IAGP)

absent choroid plexus (IAGP)

absent corpus luteum (IAGP)

absent epididymis (IAGP)

absent external male genitalia (IAGP)

absent eye anterior chamber (IAGP)

absent head fold (IAGP)

absent prostate gland (IAGP)

absent sclerotome (IAGP)

absent seminal vesicle (IAGP)

absent somites (IAGP)

absent spleen (IAGP)

absent vas deferens (IAGP)

arrest of male meiosis (IAGP)

arrest of spermatogenesis (IAGP)

asymmetric snout (IAGP)

belly spot (IAGP)

blepharoptosis (IAGP)

broad snout (IAGP)

cardiac hypertrophy (IAGP)

cataract (IAGP)

cleft palate (IAGP)

coloboma (IAGP)

corneal vascularization (IAGP)

cryptorchism (IAGP)

decreased adiponectin level (IAGP)

decreased anxiety-related response (IAGP)

decreased body size (IAGP)

decreased body weight (IAGP)

decreased circulating phosphate level (IEA)

decreased circulating testosterone level (IAGP)

decreased cranial neural crest cell number (IAGP)

decreased embryo size (IAGP)

decreased forebrain size (IAGP)

decreased heart rate (IAGP)

decreased litter size (IAGP)

decreased locomotor activity (IAGP)

decreased male germ cell number (IAGP)

decreased melanocyte number (IAGP)

decreased ovary weight (IAGP)

decreased oviduct weight (IAGP)

decreased platelet aggregation (IAGP)

decreased platelet dense granule number (IAGP)

decreased prepulse inhibition (IAGP)

decreased primary ovarian follicle number (IAGP)

decreased primordial ovarian follicle number (IAGP)

decreased somite size (IAGP)

decreased startle reflex (IAGP)

decreased testis weight (IAGP)

decreased uterus weight (IAGP)

decreased width of hypertrophic chondrocyte zone (IAGP)

disorganized long bone epiphyseal plate (IAGP)

distended abdomen (IAGP)

domed cranium (IAGP)

embryonic growth retardation (IAGP)

embryonic lethality between implantation and placentation, complete penetrance (IAGP)

embryonic lethality between somite formation and embryo turning, complete penetrance (IAGP)

embryonic lethality during organogenesis, complete penetrance (IAGP)

embryonic lethality prior to tooth bud stage (IAGP)

embryonic lethality, incomplete penetrance (IAGP)

enhanced contextual conditioning behavior (IAGP)

enhanced long term potentiation (IAGP)

enhanced NMDA-mediated synaptic currents (IAGP)

enlarged thymus (IAGP)

exencephaly (IAGP)

eye hemorrhage (IEA)

female infertility (IAGP)

hydrocephaly (IAGP)

hyperglycemia (IAGP)

hypopnea (IAGP)

hypospadia (IAGP)

impaired glucose tolerance (IAGP)

impaired ovarian folliculogenesis (IAGP)

impaired spatial learning (IAGP)

increased atretic ovarian follicle number (IAGP)

increased bleeding time (IAGP)

increased bone ossification (IAGP)

increased circulating glucose level (IAGP)

increased circulating insulin level (IAGP)

increased circulating leptin level (IAGP)

increased circulating testosterone level (IAGP)

increased circulating triglyceride level (IAGP)

increased cranial neural crest cell apoptosis (IAGP)

increased exploration in new environment (IAGP)

increased gonadal fat pad weight (IAGP)

increased liver triglyceride level (IAGP)

increased locomotor activity (IAGP)

increased male germ cell apoptosis (IAGP)

increased osteoclast cell number (IAGP)

increased prepulse inhibition (IAGP)

increased pulmonary ventilation (IAGP)

increased renal fat pad weight (IAGP)

increased sensitivity to induced morbidity/mortality (IAGP)

increased skeletal muscle triglyceride level (IAGP)

increased susceptibility to weight gain (IAGP)

increased tidal volume (IAGP)

increased total body fat amount (IAGP)

increased trophoblast giant cell number (IAGP)

increased white adipose tissue amount (IAGP)

insulin resistance (IAGP)

kinked neural tube (IAGP)

kinked tail (IAGP)

kyphosis (IAGP)

Leydig cell hypertrophy (IAGP)

male infertility (IAGP)

maternal effect (IAGP)

meiotic nondisjunction during M1 phase (IAGP)

microphthalmia (IAGP)

neonatal lethality, complete penetrance (IAGP)

neonatal lethality, incomplete penetrance (IAGP)

no abnormal phenotype detected (IAGP)

obese (IAGP)

oligozoospermia (IAGP)

open neural tube (IAGP)

ovary cyst (IAGP)

perinatal lethality (IAGP)

postnatal growth retardation (IAGP)

postnatal lethality, incomplete penetrance (IAGP)

premature death (IAGP)

premature endochondral bone ossification (IAGP)

prenatal lethality, complete penetrance (IAGP)

prenatal lethality, incomplete penetrance (IAGP)

protruding tongue (IAGP)

respiratory failure (IAGP)

retina fold (IAGP)

rib fusion (IAGP)

scapular bone hypoplasia (IAGP)

seizures (IAGP)

seminiferous tubule degeneration (IAGP)

short mandible (IAGP)

short ribs (IAGP)

short snout (IAGP)

small kidney (IEA)

small penis (IAGP)

small seminiferous tubules (IAGP)

small testis (IAGP)

small thoracic cavity (IAGP)

testicular atrophy (IAGP)

testis hypoplasia (IAGP)

thin placenta labyrinth (IAGP)

tremors (IAGP)

uterus hypoplasia (IAGP)

vagina hypoplasia (IAGP)

References

References - curated

#	Reference Title	Reference Citation
1.	Electronic Transfer of Homolog Data	MGD and Homologene mouse data transfer
2.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:8889548	PMID:9326948	PMID:9462741	PMID:9500544	PMID:9598348	PMID:9630749	PMID:10349636	PMID:10675330	PMID:10841580	PMID:11035038	PMID:11042159	PMID:11076861
PMID:11125038	PMID:11217851	PMID:11299042	PMID:11316774	PMID:11748145	PMID:11820816	PMID:11839815	PMID:12086874	PMID:12206900	PMID:12370412	PMID:12466851	PMID:12477932
PMID:12629040	PMID:12724423	PMID:12756187	PMID:12859898	PMID:12879071	PMID:12923530	PMID:14563324	PMID:14614856	PMID:14657014	PMID:14676301	PMID:14690613	PMID:15013800
PMID:15030770	PMID:15060168	PMID:15075292	PMID:15085193	PMID:15153557	PMID:15223342	PMID:15247919	PMID:15345243	PMID:15469971	PMID:15489334	PMID:15539485	PMID:15691764
PMID:15789424	PMID:15798219	PMID:15809037	PMID:15831469	PMID:15882628	PMID:15899843	PMID:15919793	PMID:15975937	PMID:16055716	PMID:16141072	PMID:16141073	PMID:16251442
PMID:16284245	PMID:16287843	PMID:16403804	PMID:16424220	PMID:16452092	PMID:16602821	PMID:16630833	PMID:16651659	PMID:16788063	PMID:16790481	PMID:16790550	PMID:16809763
PMID:16855091	PMID:16869764	PMID:16870172	PMID:16890158	PMID:16936073	PMID:16982677	PMID:16982684	PMID:16991118	PMID:17005861	PMID:17050626	PMID:17065462	PMID:17095600
PMID:17114649	PMID:17142319	PMID:17202188	PMID:17242199	PMID:17266131	PMID:17272508	PMID:17312021	PMID:17360456	PMID:17360769	PMID:17470285	PMID:17537792	PMID:17623043
PMID:17662942	PMID:17676633	PMID:17713536	PMID:17901218	PMID:17906629	PMID:17927825	PMID:18033766	PMID:18182616	PMID:18202285	PMID:18263604	PMID:18305247	PMID:18316482
PMID:18329372	PMID:18414682	PMID:18417692	PMID:18663357	PMID:18667607	PMID:18755802	PMID:18953638	PMID:19008461	PMID:19029044	PMID:19029045	PMID:19074010	PMID:19093031
PMID:19129496	PMID:19155299	PMID:19164450	PMID:19204372	PMID:19252479	PMID:19356719	PMID:19359471	PMID:19380807	PMID:19401562	PMID:19414555	PMID:19679071	PMID:19726871
PMID:19774080	PMID:19776259	PMID:19805323	PMID:19907077	PMID:19940926	PMID:20059951	PMID:20371806	PMID:20412777	PMID:20463034	PMID:20559429	PMID:20841500	PMID:20848592
PMID:21098273	PMID:21303853	PMID:21308854	PMID:21362415	PMID:21364967	PMID:21368173	PMID:21436583	PMID:21445260	PMID:21455723	PMID:21512031	PMID:21555557	PMID:21606958
PMID:21632923	PMID:21655085	PMID:21666053	PMID:21677750	PMID:21689597	PMID:21763481	PMID:21764747	PMID:21768369	PMID:21798952	PMID:21871565	PMID:21873635	PMID:21909376
PMID:21921034	PMID:22056359	PMID:22062772	PMID:22069040	PMID:22082664	PMID:22099461	PMID:22233545	PMID:22275881	PMID:22307631	PMID:22315402	PMID:22355113	PMID:22363783
PMID:22492029	PMID:22560297	PMID:22627285	PMID:22674535	PMID:22678057	PMID:22697126	PMID:22709692	PMID:22719950	PMID:22730198	PMID:22815849	PMID:22819676	PMID:22863743
PMID:22878961	PMID:22912418	PMID:22912798	PMID:23023002	PMID:23041626	PMID:23095280	PMID:23229899	PMID:23269247	PMID:23312518	PMID:23355744	PMID:23415800	PMID:23418536
PMID:23516300	PMID:23530049	PMID:23542432	PMID:23577141	PMID:23673330	PMID:23677977	PMID:23748361	PMID:23754746	PMID:23811236	PMID:23852112	PMID:23873027	PMID:24107967
PMID:24124870	PMID:24167280	PMID:24189070	PMID:24227709	PMID:24247431	PMID:24312475	PMID:24381199	PMID:24514266	PMID:24516400	PMID:24589777	PMID:24595293	PMID:24598388
PMID:24627527	PMID:24664281	PMID:24748541	PMID:24802190	PMID:24847848	PMID:24876275	PMID:24931605	PMID:24931609	PMID:24956260	PMID:24956378	PMID:24997765	PMID:25028484
PMID:25073978	PMID:25083865	PMID:25126785	PMID:25130899	PMID:25183173	PMID:25201955	PMID:25251415	PMID:25263330	PMID:25267913	PMID:25383540	PMID:25497093	PMID:25503409
PMID:25526089	PMID:25742748	PMID:25762440	PMID:25805134	PMID:25855173	PMID:26000481	PMID:26017770	PMID:26097038	PMID:26162102	PMID:26166575	PMID:26173091	PMID:26255629
PMID:26385750	PMID:26546974	PMID:26586220	PMID:26655900	PMID:26715742	PMID:26746789	PMID:26746790	PMID:26843644	PMID:26850657	PMID:26888934	PMID:26932671	PMID:27006499
PMID:27006501	PMID:27019112	PMID:27025239	PMID:27053202	PMID:27147518	PMID:27264177	PMID:27273096	PMID:27441631	PMID:27479497	PMID:27631493	PMID:28053125	PMID:28148727
PMID:28158249	PMID:28166224	PMID:28424158	PMID:28511845	PMID:28536097	PMID:28607062	PMID:28655792	PMID:28706256	PMID:28723571	PMID:28800946	PMID:28839205	PMID:28886341
PMID:29016745	PMID:29030458	PMID:29068314	PMID:29073114	PMID:29191918	PMID:29213092	PMID:29222403	PMID:29222434	PMID:29229773	PMID:29229982	PMID:29293958	PMID:29579167
PMID:29666270	PMID:29668850	PMID:29961578	PMID:30135513	PMID:30190546	PMID:30251381	PMID:30305289	PMID:30344048	PMID:30447021	PMID:30673615	PMID:30765420	PMID:30846611
PMID:30887000	PMID:30926782	PMID:30926797	PMID:31051113	PMID:31218818	PMID:31451639	PMID:31480771	PMID:31484989	PMID:31513564	PMID:31520742	PMID:31539519	PMID:31626642
PMID:31640562	PMID:31653568	PMID:31722069	PMID:31813547	PMID:31980536	PMID:32015540	PMID:32065256	PMID:32092051	PMID:32442405	PMID:32492420	PMID:32515350	PMID:32516589
PMID:32566252	PMID:32644214	PMID:32649884	PMID:32657535	PMID:32692983	PMID:32765228	PMID:32969477	PMID:33030203	PMID:33238123	PMID:33513603	PMID:33515576	PMID:33958373
PMID:34050709	PMID:34272903	PMID:34398873	PMID:34433040	PMID:34434167	PMID:34463714	PMID:34499868	PMID:34504306	PMID:34516839	PMID:34762332	PMID:34893605	PMID:34910909
PMID:34931676	PMID:34932949	PMID:34977916	PMID:35081489	PMID:35131866	PMID:35535852	PMID:35593225	PMID:35745101	PMID:35797824	PMID:35973480	PMID:36332029	PMID:36343245
PMID:36535370	PMID:36793209

Genomics

Comparative Map Data

Tmem163
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	1	127,418,079 - 127,605,758 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	1	127,414,283 - 127,607,285 (-)	Ensembl		GRCm39 Ensembl
GRCm38	1	127,490,342 - 127,678,021 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	1	127,486,546 - 127,679,548 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	1	129,386,919 - 129,574,598 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	1	129,314,097 - 129,505,567 (-)	NCBI		MGSCv36	mm8
Celera	1	130,139,903 - 130,318,056 (-)	NCBI		Celera
Cytogenetic Map	1	E3	NCBI

TMEM163
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	2	134,455,759 - 134,719,000 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p13 Ensembl	2	134,455,759 - 134,719,000 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	2	135,213,330 - 135,476,570 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	2	134,930,030 - 135,193,040 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	2	128,926,002 - 129,189,469 (-)	NCBI		Celera
Cytogenetic Map	2	q21.3	NCBI
HuRef	2	127,206,130 - 127,468,192 (-)	NCBI		HuRef
CHM1_1	2	135,217,959 - 135,481,287 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	2	134,895,326 - 135,159,268 (-)	NCBI		T2T-CHM13v2.0

Tmem163
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	13	38,967,913 - 39,141,664 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	13	38,968,101 - 39,141,452 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	13	41,550,247 - 41,724,197 (-)	NCBI	Rnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0	13	42,838,349 - 43,012,290 (-)	NCBI	Rnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0	13	40,104,163 - 40,278,089 (-)	NCBI	Rnor_WKY
Rnor_6.0	13	44,166,306 - 44,345,735 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	13	44,166,306 - 44,345,735 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	13	49,258,672 - 49,433,018 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	13	40,144,073 - 40,327,947 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	13	40,158,648 - 40,363,296 (-)	NCBI
Celera	13	39,345,427 - 39,519,218 (-)	NCBI		Celera
Cytogenetic Map	13	q13	NCBI

Tmem163
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955440	2,007,097 - 2,240,275 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955440	2,006,152 - 2,240,209 (-)	NCBI	ChiLan1.0	ChiLan1.0

TMEM163
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1	2B	40,222,232 - 40,479,489 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	2B	25,138,333 - 25,393,295 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	2B	138,545,761 - 138,793,811 (-)	NCBI	panpan1.1	PanPan1.1	panPan2

TMEM163
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	19	37,335,608 - 37,744,291 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	19	37,336,598 - 37,562,509 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	19	37,576,037 - 37,799,910 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	19	38,780,404 - 39,005,058 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	19	38,780,415 - 39,039,513 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	19	37,423,032 - 37,647,603 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	19	37,583,925 - 37,808,428 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	19	38,812,101 - 39,036,892 (-)	NCBI		UU_Cfam_GSD_1.0

Tmem163
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405303	83,520,586 - 83,735,621 (+)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004936469	57,882,130 - 58,097,965 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

TMEM163
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	15	17,262,138 - 17,543,398 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	15	17,260,885 - 17,548,920 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	15	19,811,516 - 20,021,754 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

TMEM163
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	10	18,692,742 - 18,950,099 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666061	3,553,990 - 3,812,202 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Tmem163
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624732	33,904,224 - 34,143,441 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624732	33,903,263 - 34,143,635 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Tmem163
6868 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	1126
Count of miRNA genes:	511
Interacting mature miRNAs:	611
Transcripts:	ENSMUST00000027585, ENSMUST00000160111, ENSMUST00000160616, ENSMUST00000162406
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCm39)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
13824984	Twq5_m	testis weight QTL 5 (mouse)					1	3069992	184732197	Mouse
11039528	Ccc3_m	colitis susceptibility in the Collaborative Cross 3 (mouse)					1	3680142	195051546	Mouse
1357753	Kidq2_m	kidney weight QTL 2 (mouse)			Not determined		1	34760138	150193871	Mouse
1357488	Splq3_m	spleen weight QTL 3 (mouse)			Not determined		1	34760138	150193871	Mouse
1558860	W10q7_m	weight 10 weeks QTL 7 (mouse)			Not determined		1	34760138	150193871	Mouse
1301722	Cia9_m	collagen induced arthritis QTL 9 (mouse)			Not determined		1	45783900	189303617	Mouse
4142291	Aec2_m	autoimmune exocrinopathy 2 (mouse)			Not determined			52457737	182250592	Mouse
10412185	Hcs9_m	hepatocarcinogenesis susceptibility 9 (mouse)			Not determined		1	63854690	189303617	Mouse
1300841	Ssial1_m	susceptibility to sialadenitis 1 (mouse)			Not determined		1	63920002	153557562	Mouse
27095918	Ulnl1_m	ulna length 1, 5 week (mouse)					1	67339159	129727737	Mouse
1300989	Lrdg1_m	light induced retinal degeneration 1 (mouse)			Not determined		1	73755175	147125370	Mouse
4141914	Gcsfis_m	G-CSF induced splenomegaly (mouse)			Not determined			74516235	148715579	Mouse
1357847	Jckm2_m	juvenile cystic kidney modifier 2 (mouse)			Not determined		1	74991977	133290937	Mouse
27095931	Pglq1_m	pelvic girdle length QTL 1, 5 week (mouse)					1	75976637	128527737	Mouse
27095928	Pglq6_m	pelvic girdle length QTL 6, 10 week (mouse)					1	75976637	148775742	Mouse
26884448	Sklq1_m	skull length QTL 1, 5 week (mouse)					1	75976637	181327565	Mouse
1301350	Nidd4k_m	Nidd4 on KK-A (mouse)			Not determined		7	82291982	147125370	Mouse
1357439	Popoa_m	premature ovulation and primary oocyte arrest (mouse)			Not determined		1	82643189	135615379	Mouse
27095913	Scvln2_m	sacral vertebrae length 2, 5 week (mouse)					1	94127725	148775742	Mouse
27095901	Scvln8_m	sacral vertebrae length 2, 10 week (mouse)					1	94127725	172027567	Mouse
27226779	Tibl1_m	tibia length 1, 5 week (mouse)					1	95527725	162027569	Mouse
1301123	Cd8mts2_m	CD8 memory T cell subset 2 (mouse)			Not determined		1	96618386	130618557	Mouse
1301753	Tir3a_m	trypansomiasis infection response 3a (mouse)			Not determined		1	97053986	131054190	Mouse
1301536	Pbbcp1_m	peripheral blood B cell percentage 1 (mouse)			Not determined		1	99507660	133507845	Mouse
1301193	Lxw3_m	lupus BXSB x NZW 3 (mouse)			Not determined		1	102968534	136968667	Mouse
10412162	Nobq3_m	New Zealand obese QTL 3 (mouse)			Not determined		1	103933405	191225397	Mouse
12790994	Aaaq1_m	aortic arch angle QTL 1 (mouse)					1	109495943	143495943	Mouse
1301979	Melm1_m	melanoma modifier 1 (mouse)			Not determined		1	109638262	143638479	Mouse
1357600	Obq17_m	obesity QTL 17 (mouse)			Not determined		1	110553179	144553298	Mouse
10401248	Bglu12_m	blood glucose level 12 (mouse)			Not determined		1	110553179	144553298	Mouse
1301149	Lrnx12_m	learning-contextual 12 (mouse)			Not determined		1	112008822	168186402	Mouse
1302098	Eila1_m	ethanol induced locomotor activity 1 (mouse)			Not determined		1	112008822	175468938	Mouse
1301249	Sbw1_m	splenomegaly-NZB x NZW 1 (mouse)			Not determined		1	112131005	146131085	Mouse
10045640	Jckm4_m	juvenile cystic kidney modifier 4 (mouse)			Not determined		1	116290836	150290937	Mouse
27095915	Scvln13_m	sacral vertebrae length 2, 16 week (mouse)					1	117527730	179827565	Mouse
1302161	Exq2_m	exploratory and excitability QTL 2 (mouse)			Not determined		1	118099720	152099816	Mouse
27226714	Metcl1_m	metatarsal-calcaneal length 1, 5 week (mouse)					1	121727729	139727738	Mouse
27226740	Metcl13_m	metatarsal-calcaneal length 13, 16 week (mouse)					1	121727729	153775746	Mouse
27226743	Metcl7_m	metatarsal-calcaneal length 7, 10 week (mouse)					1	121727729	153875746	Mouse
27226767	Tibl10_m	tibia length 10, 10 week (mouse)					1	121727729	164827569	Mouse
27226799	Feml5_m	femur length 5, 5 week (mouse)					1	122027729	164827569	Mouse
12880408	V125Dq3_m	vitamin D active form serum level QTL 3 (mouse)					1	122927738	156927738	Mouse

Markers in Region

28.MHAa65T_M13Rev.seq

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	1	127,582,163 - 127,582,315	UniSTS	GRCm38
MGSCv37	1	129,478,740 - 129,478,892	UniSTS	GRCm37
Celera	1	130,223,469 - 130,223,621	UniSTS
Cytogenetic Map	1	E3	UniSTS
Whitehead_YAC	1		UniSTS

D1Mit495

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	1	127,625,442 - 127,625,561	UniSTS	GRCm38
MGSCv37	1	129,522,019 - 129,522,138	UniSTS	GRCm37
Celera	1	130,263,762 - 130,263,875	UniSTS
Cytogenetic Map	1	E3	UniSTS
cM Map	1	67.0	UniSTS
Whitehead Genetic	1	69.9	UniSTS
Whitehead/MRC_RH	1	1691.96	UniSTS
Whitehead_YAC	1		UniSTS

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_028135	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC130527	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AC132109	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AC163636	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK011522	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK042650	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK047006	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK078832	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC046234	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC059048	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CA319657	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH466520	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSMUST00000027585 ⟹ ENSMUSP00000027585

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	1	127,414,283 - 127,605,833 (-)	Ensembl
GRCm38.p6 Ensembl	1	127,486,546 - 127,678,096 (-)	Ensembl

RefSeq Acc Id:

ENSMUST00000160111

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	1	127,419,098 - 127,428,081 (-)	Ensembl
GRCm38.p6 Ensembl	1	127,491,361 - 127,500,344 (-)	Ensembl

RefSeq Acc Id:

ENSMUST00000160616 ⟹ ENSMUSP00000124307

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	1	127,414,295 - 127,605,758 (-)	Ensembl
GRCm38.p6 Ensembl	1	127,486,558 - 127,678,021 (-)	Ensembl

RefSeq Acc Id:

ENSMUST00000162406

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	1	127,419,282 - 127,465,167 (-)	Ensembl
GRCm38.p6 Ensembl	1	127,491,545 - 127,537,430 (-)	Ensembl

RefSeq Acc Id:

ENSMUST00000185560 ⟹ ENSMUSP00000140828

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	1	127,418,635 - 127,607,285 (-)	Ensembl
GRCm38.p6 Ensembl	1	127,490,898 - 127,679,548 (-)	Ensembl

RefSeq Acc Id:

NM_028135 ⟹ NP_082411

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	1	127,418,079 - 127,605,758 (-)	NCBI
GRCm38	1	127,490,342 - 127,678,021 (-)	NCBI
MGSCv37	1	129,386,919 - 129,574,598 (-)	RGD
Celera	1	130,139,903 - 130,318,056 (-)	RGD
cM Map	1		ENTREZGENE

Sequence:

show sequence

CGCGACGTGAGTGGGGGGCGCGTCCTCCGTCACGCCCTCACCCAGCCCTGCGCTACCCGCAGGC
TGGTCCCCACGCCCCCTAACAGTTCCCTCAGCTTCCACGCGTCTGGACCGTCCGGGGCCCTCCC
TCTCCACTCGCCTGGGTGCATCGATACCAGTGCCCGGGCTTAGCGCCTCGGGGCGGGTCCCTGC
CGCCCGCACCTGCCCCCGGGGGCGGAGCGCAGCGGCGACAGCGCGGCACCAGCCTCCGCCACTC
GGTGTGCTAGCGGCGGACCTGCCGCTCACCGCGGTACGGGCGAAGCTCTCTCTCGGTGCCCTCG
GTCTCTGGCACTTTGGACTTCGTGTCTCCATCGTGGTCGGCTTCGCCTCGGGGGATCTGCAGCC
CCGGCGCCATGGAGCCGGCTCTGGGCAGCGAGCGCCGCAGCCCCCCTGGCCCCGGAGTCCCGCG
GCCGCCACCGCGGGGCCACGCGCCCTCGACCGCCGCCCCCGCCCCCAGCCCGGCTCCGATGAGC
TCCTCTGTGCAGTCTGATGAGGAAAGGCAGCCACGGATCAGCGAGAGCGGCCAGTTCAGCGACG
GGTTGGAAGACCGAGGTTTACTAGAAAGCAGCACCCGGCTGAAACCTCATGAAGCCCAGAACTA
CAGGAAGAAGGCATTGTGGGTATCCTGGCTGTCCATTATTGTCACCCTGGCCCTGGCAGTGGCC
GCCTTCACTGTCTCCGTCATGAGGTACAGCGCCTCTGCCTTCGGGTTTGCATTTGATGCCATCC
TGGATGTGCTGTCCTCGGCCATTGTCCTCTGGCGTTACAGCAATGCGGCTGCTGTGCACTCTGC
AAACAGGGAGTATATAGCCTGTGTCATCTTGGGGGTGATCTTTCTTCTGTCATCTATATGCATA
GTGGTCAAAGCCATCCATGACCTCTCAACTAGGCTGCTCCCTGAAGTGGATGATTTCCTGTTCA
GCGTCTCCATTCTAAGCGGGATCCTTTGCAGCGTACTGGCTGTGCTGAAGTTTATGCTGGGGAA
GGTCCTGACAAGCAGGGCTCTCATCACAGACGGGTTCAACTCCCTTGTTGGGGGCGTGATGGGC
TTCTCCATCCTTCTAAGTGCAGAAGTGTTCAAACACAACGCAGCAGTCTGGTACCTGGACGGCA
GCATTGGTGTCCTGATTGGTCTCACCATCTTTGCCTACGGGGTCAAACTCCTCATCGACATGGT
GCCCAGAGTGAGACAGACGCGTCATTATGAAATGTTTGAGTGAAGGCAGCAGGAAGGGCGGCAG
GGACTGCCAGCCCCGATGAAGAGCGTCACTTGACAAGAGGTTTCCACGCAGGCAGATGGTGCCA
ACATTCAACTGCACATCCAGTTTCATTTTGGGAAGTTTTCGTTCATAGAGTCTGTCATCATGGG
CTGGGGTCTGCCAGAGGCTGGACCTGCCCTACATCCTCACCCAGTCGCCCACCATCAAACATGT
TAGGATGACGTTGCCCGTGGGAGGGGCCGCCATGCTTCCCAACCTTGAGCCGGAAGTGACATTT
TTCTATTTCCTGGAGTCAAACAGTTCTTGGAGGCAGGCTAGGGTCTCTGCTTGACAGGAAGCCT
GTGGTGCACACTGTCAGCCAAAACCAGATAGTAACTGACTGGGTCACCTCCACCTGACATGTGG
CCGAACCACCTCTAGAGTCACACTCTCCTAGCAGATGCCATCGGTACAGCACTTCCTAACTCCT
ACCAACACGTTTCCTACACTTTTACTAATCCCAACACTAAACCGGTTCGTTCAGAAGGAGGCCA
TTCTATTTTTTAAAGTGTTTAGTGATCTTGAGCTTTGCATGGACAAGCTACGTAAGCACACAGC
CCTTTCCTTCACGTCTAGAACCCACACATCTGTAAAAACCCAGGAGCCATTTTTGAGAGATGTG
AACCTCTAAACATTTATTTGTAATAAATAATTATAATCATCACCCCGAATCTGCATATCTCTAT
ATGCTGGTCACAGTACCTCAGTCTGTGAGACGTGGGCCGCTCCTTCAGAAGGAACAAGATGCCC
TCAGTTTATGTAACATTAGATATGTGCTGTAGACATGCCCTCATTCCACCATGTTCTGTAGCTC
TCACAGTACTGCCCACACGGGCAGCCATGTCAGGCCTATAAAGACCTTTACCATTTGTACGATG
TGGGGAGGTTGTATTTGAGAGCTGGTAGTGTGTGTGCCAACATGTAGGGAGTACACGTTGTGGG
CAGGCTCGCTCTCTCTCTCTCTCCTCTGTTTCCTTTGTGTGTTCGCATGTGGAGTTTGTTTGTT
TATTTATTTATGAATGAAACAGTCCCTCACCCAAACTAGAGCTCGCTGGTTCAGCGAGCCTGTG
AGTCTTGGGAATCTGTTTATCTTGTTTTCCCAGTATTGGGGTTTCACCATCAGAGGCGGCTTCC
TGTGGGTGCTGTGGAGCTGACATCAGGTCTTCCTTTTTGTACAGCAAGTGTTCTGCTCAATGAG
TCATTCCCCCATCTCCAGCAG

hide sequence

Protein Sequences


Protein RefSeqs	NP_082411	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH46234	(Get FASTA)	NCBI Sequence Viewer
	AAH59048	(Get FASTA)	NCBI Sequence Viewer
	BAB27676	(Get FASTA)	NCBI Sequence Viewer
	BAC31320	(Get FASTA)	NCBI Sequence Viewer
	BAC32940	(Get FASTA)	NCBI Sequence Viewer
	EDL39766	(Get FASTA)	NCBI Sequence Viewer
	Q8C996	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:

NP_082411 ⟸ NM_028135

- UniProtKB:

Q9D0E0 (UniProtKB/Swiss-Prot), Q8C996 (UniProtKB/Swiss-Prot)

- Sequence:

show sequence

MEPALGSERRSPPGPGVPRPPPRGHAPSTAAPAPSPAPMSSSVQSDEERQPRISESGQFSDGLE
DRGLLESSTRLKPHEAQNYRKKALWVSWLSIIVTLALAVAAFTVSVMRYSASAFGFAFDAILDV
LSSAIVLWRYSNAAAVHSANREYIACVILGVIFLLSSICIVVKAIHDLSTRLLPEVDDFLFSVS
ILSGILCSVLAVLKFMLGKVLTSRALITDGFNSLVGGVMGFSILLSAEVFKHNAAVWYLDGSIG
VLIGLTIFAYGVKLLIDMVPRVRQTRHYEMFE

hide sequence

RefSeq Acc Id:

ENSMUSP00000027585 ⟸ ENSMUST00000027585

RefSeq Acc Id:

ENSMUSP00000140828 ⟸ ENSMUST00000185560

RefSeq Acc Id:

ENSMUSP00000124307 ⟸ ENSMUST00000160616

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q8C996-F1-model_v2	AlphaFold	Q8C996	1-288	view protein structure

Promoters

RGD ID:

6874788

Promoter ID:

EPDNEW_M839

Type:

multiple initiation site

Name:

Tmem163_1

Description:

Mus musculus transmembrane protein 163 , mRNA.

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Alternative Promoters:

null; see alsoEPDNEW_M840

Experiment Methods:

Single-end sequencing.

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	1	127,677,762 - 127,677,822	EPDNEW

RGD ID:

6874778

Promoter ID:

EPDNEW_M840

Type:

initiation region

Name:

Tmem163_2

Description:

Mus musculus transmembrane protein 163 , mRNA.

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Alternative Promoters:

null; see alsoEPDNEW_M839

Experiment Methods:

Single-end sequencing.

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	1	127,677,940 - 127,678,000	EPDNEW

RGD ID:

6818599

Promoter ID:

MM_KWN:1955

Type:

CpG-Island

SO ACC ID:

SO:0000170

Source:

MPROMDB

Tissues & Cell Lines:

Lung

Transcripts:

OTTMUST00000075107

Position:

Mouse Assembly	Chr	Position (strand)	Source
MGSCv36	1	129,396,776 - 129,397,276 (-)	MPROMDB

RGD ID:

6818600

Promoter ID:

MM_KWN:1956

Type:

Non-CpG

SO ACC ID:

SO:0000170

Source:

MPROMDB

Tissues & Cell Lines:

Brain

Transcripts:

OTTMUST00000075106

Position:

Mouse Assembly	Chr	Position (strand)	Source
MGSCv36	1	129,433,906 - 129,434,406 (-)	MPROMDB

RGD ID:

6818602

Promoter ID:

MM_KWN:1957

Type:

CpG-Island

SO ACC ID:

SO:0000170

Source:

MPROMDB

Tissues & Cell Lines:

Brain, Lung

Transcripts:

OTTMUST00000075105, OTTMUST00000078911

Position:

Mouse Assembly	Chr	Position (strand)	Source
MGSCv36	1	129,574,219 - 129,574,719 (-)	MPROMDB

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	MGI:1919410	AgrOrtholog
Ensembl Genes	ENSMUSG00000026347	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Protein	ENSMUSP00000027585.8	UniProtKB/Swiss-Prot
	ENSMUSP00000124307.2	UniProtKB/Swiss-Prot
	ENSMUSP00000140828	ENTREZGENE
	ENSMUSP00000140828.2	UniProtKB/Swiss-Prot
Ensembl Transcript	ENSMUST00000027585.14	UniProtKB/Swiss-Prot
	ENSMUST00000160616.8	UniProtKB/Swiss-Prot
	ENSMUST00000185560	ENTREZGENE
	ENSMUST00000185560.2	UniProtKB/Swiss-Prot
Gene3D-CATH	1.20.1510.10	UniProtKB/Swiss-Prot
InterPro	Cation_efflux_TMD_sf	UniProtKB/Swiss-Prot
	Tmem163	UniProtKB/Swiss-Prot
KEGG Report	mmu:72160	UniProtKB/Swiss-Prot
MGD	MGI:1919410	ENTREZGENE
NCBI Gene	72160	ENTREZGENE
PANTHER	PTHR31937	UniProtKB/Swiss-Prot
	TRANSMEMBRANE PROTEIN 163	UniProtKB/Swiss-Prot
PhenoGen	Tmem163	PhenoGen
Superfamily-SCOP	SSF161111	UniProtKB/Swiss-Prot
UniProt	Q8C996	ENTREZGENE
	Q9D0E0	ENTREZGENE
	TM163_MOUSE	UniProtKB/Swiss-Prot
UniProt Secondary	Q8C8I2	UniProtKB/Swiss-Prot
	Q9D0E0	UniProtKB/Swiss-Prot

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - OMIM

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - OMIM

Mammalian Phenotype