Mtdh (metadherin) - Rat Genome Database

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Gene: Mtdh (metadherin) Mus musculus
Analyze
Symbol: Mtdh
Name: metadherin
RGD ID: 1332296
MGI Page MGI
Description: Predicted to enable NF-kappaB binding activity; double-stranded RNA binding activity; and transcription coactivator activity. Predicted to be involved in several processes, including lipopolysaccharide-mediated signaling pathway; positive regulation of angiogenesis; and positive regulation of intracellular signal transduction. Located in endoplasmic reticulum membrane; nucleolus; and perinuclear region of cytoplasm. Is expressed in several structures, including brain; genitourinary system; limb primordium; nose; and skin. Human ortholog(s) of this gene implicated in hepatocellular carcinoma. Orthologous to human MTDH (metadherin).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 2610103J23Rik; 3D3; 3D3/Ly; 3D3/Lyric; AEG-; AEG-1; AV353288; D8Bwg1112e; Ly; Lyric; lysine-rich CEACAM1 co-isolated protein; metastasis adhesion protein
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Related Pseudogenes: Gm17850   Gm3836  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391534,082,613 - 34,143,683 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1534,082,840 - 34,145,770 (+)EnsemblGRCm39 Ensembl
GRCm381534,082,442 - 34,143,537 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1534,082,694 - 34,145,624 (+)EnsemblGRCm38mm10GRCm38
MGSCv371534,012,474 - 34,072,140 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361534,027,370 - 34,085,968 (+)NCBIMGSCv36mm8
Celera1534,707,184 - 34,766,810 (+)NCBICelera
Cytogenetic Map15B3.1NCBI
cM Map1513.98NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dimethylhydrazine  (EXP)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,6-dinitrotoluene  (ISO)
2-methylcholine  (ISO)
3,4-methylenedioxymethamphetamine  (EXP,ISO)
4,4'-sulfonyldiphenol  (ISO)
acetamide  (ISO)
aflatoxin B1  (ISO)
aristolochic acid A  (ISO)
benzatropine  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
bisphenol A  (EXP,ISO)
Bisphenol B  (ISO)
cadmium dichloride  (ISO)
caffeine  (ISO)
cannabidiol  (ISO)
carbamazepine  (ISO)
chlorpyrifos  (ISO)
cidofovir anhydrous  (ISO)
cisplatin  (ISO)
clodronic acid  (ISO)
clozapine  (ISO)
cobalt dichloride  (ISO)
copper(II) sulfate  (ISO)
coumarin  (ISO)
crocidolite asbestos  (EXP)
Cuprizon  (ISO)
cyclosporin A  (ISO)
deoxynivalenol  (EXP)
dibenzo[a,l]pyrene  (ISO)
dibutyl phthalate  (EXP)
dioxygen  (ISO)
disodium selenite  (ISO)
dorsomorphin  (ISO)
ethyl methanesulfonate  (ISO)
flutamide  (ISO)
folic acid  (EXP)
formaldehyde  (ISO)
hexadecanoic acid  (ISO)
hypochlorous acid  (EXP)
ifosfamide  (ISO)
ivermectin  (ISO)
lead(0)  (ISO)
metformin  (ISO)
methyl methanesulfonate  (ISO)
miconazole  (EXP)
N-methyl-4-phenylpyridinium  (EXP)
paracetamol  (ISO)
phenobarbital  (EXP)
phenylmercury acetate  (ISO)
propiconazole  (EXP)
SB 431542  (ISO)
sodium fluoride  (EXP)
Soman  (ISO)
sunitinib  (ISO)
tetrachloromethane  (EXP)
thapsigargin  (ISO)
Tributyltin oxide  (EXP)
trichloroethene  (EXP,ISO)
trichostatin A  (ISO)
triphenyl phosphate  (ISO)
Triptolide  (EXP)
triptonide  (EXP)
troglitazone  (EXP)
tunicamycin  (ISO)
valproic acid  (ISO)

References

References - curated
# Reference Title Reference Citation
1. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
2. MGDs mouse GO annotations MGD data from the GO Consortium
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:9371744   PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11217851   PMID:11544199   PMID:12466851   PMID:12477932   PMID:12520002   PMID:12904583  
PMID:14610273   PMID:14980505   PMID:15093543   PMID:15489334   PMID:15782199   PMID:16141072   PMID:16141073   PMID:16602821   PMID:18287559   PMID:19433866   PMID:19463158   PMID:20388796  
PMID:20736086   PMID:21266579   PMID:21267068   PMID:21677750   PMID:21873635   PMID:21976539   PMID:22056881   PMID:22884085   PMID:23408429   PMID:24855648   PMID:24981741   PMID:25065684  
PMID:25074613   PMID:25193383   PMID:25346496   PMID:25787082   PMID:25944909   PMID:26070567   PMID:27882943   PMID:28174206   PMID:28437865   PMID:29130111   PMID:30181179   PMID:30550785  
PMID:30976056   PMID:31040226   PMID:31146259   PMID:31806873   PMID:32098917   PMID:32325033   PMID:32554809   PMID:33239430   PMID:33671513   PMID:34741448   PMID:35121987   PMID:35121988  
PMID:36417873   PMID:36548985   PMID:37421418  


Genomics

Comparative Map Data
Mtdh
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391534,082,613 - 34,143,683 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1534,082,840 - 34,145,770 (+)EnsemblGRCm39 Ensembl
GRCm381534,082,442 - 34,143,537 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1534,082,694 - 34,145,624 (+)EnsemblGRCm38mm10GRCm38
MGSCv371534,012,474 - 34,072,140 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361534,027,370 - 34,085,968 (+)NCBIMGSCv36mm8
Celera1534,707,184 - 34,766,810 (+)NCBICelera
Cytogenetic Map15B3.1NCBI
cM Map1513.98NCBI
MTDH
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38897,644,184 - 97,730,260 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl897,644,184 - 97,730,260 (+)EnsemblGRCh38hg38GRCh38
GRCh37898,656,412 - 98,742,488 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36898,725,583 - 98,807,714 (+)NCBINCBI36Build 36hg18NCBI36
Build 34898,725,582 - 98,807,711NCBI
Celera894,842,407 - 94,928,366 (+)NCBICelera
Cytogenetic Map8q22.1NCBI
HuRef893,862,743 - 93,949,052 (+)NCBIHuRef
CHM1_1898,696,633 - 98,783,342 (+)NCBICHM1_1
T2T-CHM13v2.0898,769,667 - 98,855,740 (+)NCBIT2T-CHM13v2.0
Mtdh
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2765,306,464 - 65,365,647 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl765,306,400 - 65,364,413 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx767,196,680 - 67,252,148 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0769,398,395 - 69,453,863 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0769,258,737 - 69,313,219 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0772,771,018 - 72,830,599 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl772,772,440 - 72,827,908 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0772,938,130 - 72,997,298 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.0773,209,610 - 73,233,540 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4769,527,182 - 69,583,015 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1769,547,911 - 69,603,745 (+)NCBI
Celera762,413,649 - 62,469,018 (+)NCBICelera
Cytogenetic Map7q22NCBI
Mtdh
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541713,479,762 - 13,537,950 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541713,479,398 - 13,540,706 (+)NCBIChiLan1.0ChiLan1.0
MTDH
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1890,528,605 - 90,614,746 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0894,282,432 - 94,368,516 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1896,472,750 - 96,552,986 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl896,473,247 - 96,551,341 (+)Ensemblpanpan1.1panPan2
MTDH
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12941,675,601 - 41,732,389 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2941,640,035 - 41,729,949 (+)EnsemblCanFam3.1canFam3CanFam3.1
ROS_Cfam_1.02941,870,170 - 41,926,925 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2941,869,793 - 41,926,513 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12941,908,451 - 41,965,166 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02941,878,798 - 41,935,435 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02942,344,127 - 42,400,842 (+)NCBIUU_Cfam_GSD_1.0
Mtdh
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530337,588,843 - 37,653,629 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647045,016,099 - 45,079,710 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647045,016,099 - 45,079,709 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MTDH
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl439,051,537 - 39,113,385 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1439,052,895 - 39,113,380 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2442,097,775 - 42,166,475 (-)NCBISscrofa10.2Sscrofa10.2susScr3
MTDH
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1892,563,480 - 92,641,874 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl892,563,550 - 92,640,231 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603948,121,736 - 48,200,807 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Mtdh
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247634,905,044 - 4,967,014 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247634,905,261 - 4,967,014 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Mtdh
1238 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:997
Count of miRNA genes:532
Interacting mature miRNAs:650
Transcripts:ENSMUST00000022865, ENSMUST00000163333, ENSMUST00000163697, ENSMUST00000168991, ENSMUST00000169905, ENSMUST00000170050, ENSMUST00000170553, ENSMUST00000171711, ENSMUST00000172082, ENSMUST00000172083
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4141358Ath22_matherosclerosis 22 (mouse)Not determined346465237464652Mouse
10401902Sicd2_mseizure-induced cell death 2 (mouse)Not determined15347438971197538Mouse
4141952W3q7_mweight 3 weeks QTL 7 (mouse)Not determined348969478601286Mouse
4142252Tailaq4_mtail length adjusted QTL 4 (mouse)Not determined348969478601286Mouse
4142448Tailq6_mtail length QTL 6 (mouse)Not determined348969478601286Mouse
1357559Scfq2_msubcutaneous fat pad weight QTL 2 (mouse)Not determined15348969478601286Mouse
1357659Epfpq4_mepididymal fat percentage QTL 4 (mouse)Not determined15348969478601286Mouse
11252136Modvl4_mmodifier of vacuolated lens (mouse)15562049439620614Mouse
26884409Bzwq16_mbi-zygomatic width QTL 16, 16 week (mouse)15612948138000244Mouse
26884384Skwq12_mskull length QTL 12, 16 week (mouse)15612948150763396Mouse
26884387Skwq8_mskull length QTL 8, 10 week (mouse)15612948168271849Mouse
26884412Bzwq10_mbi-zygomatic width QTL 10, 10 week (mouse)15612948171471849Mouse
26884417Bzwq4_mbi-zygomatic width QTL 4, 5 week (mouse)15612948172471849Mouse
27226786Feml11_mfemur length 11, 5 week (mouse)15612948175871849Mouse
27095932Ulnl11_mulna length 11, 16 week (mouse)15612948176384200Mouse
27226717Tibw4_mtibia width 4, proximal, 10 week (mouse)15612948178684200Mouse
27226734Tibmd5_mtibia midshaft diameter 5, 10 week (mouse)15612948186684201Mouse
26884442Sklq6_mskull length QTL 6, 5 week (mouse)156129481100797881Mouse
26884429Zlq6_mzygomatic length QTL 6, 10 week (mouse)15682948144963396Mouse
27226721Tibw8_mtibia width 8, proximal, 16 week (mouse)15692948175871849Mouse
27226773Tibl16_mtibia length 16, 10 week (mouse)15692948175871849Mouse
27226777Tibl8_mtibia length 8, 5 week (mouse)15692948184584201Mouse
27095940Ulnl8_mulna length 8, 10 week (mouse)15722948155263396Mouse
27226759Feml17_mfemur length 17, 10 week (mouse)15762948155263396Mouse
27226755Feml22_mfemur length 22, 16 week (mouse)15762948159271849Mouse
27095922Pglq11_mpelvic girdle length QTL 11, 10 week (mouse)15812948438763395Mouse
26884439Sklq11_mskull length QTL 11, 10 week (mouse)15812948447663396Mouse
10412172Habiir5_mhyperoxic acute lung injury imprinted region 5 (mouse)Not determined15927302243311880Mouse
4140994Shali3_msurvival time to hyperoxic acute lung injury 3 (mouse)Not determined927302243311880Mouse
4141192Ssrq2_mstress response QTL 2 (mouse)Not determined927302256186850Mouse
1301433Rapop5_mradiation-induced apoptosis 5 (mouse)Not determined15927302279474762Mouse
1357526Hyplip2_mhyperlipidemia 2 (mouse)Not determined1512402203102896555Mouse
1301020Pheo_mpheomelanin (mouse)Not determined151384700647847148Mouse
1302165Yv_myellow value (mouse)Not determined151384700647847148Mouse
4141423Nstr2_mnerve sheath tumor resistance QTL 2 (mouse)Not determined1492758748927756Mouse
1301951Eila3_methanol induced locomotor activity 3 (mouse)Not determined151492758748927756Mouse
1302007Bbaa14_mB.burgdorferi-associated arthritis 14 (mouse)Not determined151492758748927756Mouse
1301499Bdln2_mbody length 2 (mouse)Not determined151564534349645470Mouse
12859288Criq1_mCitrobacter rodentium infection QTL 1 (mouse)151603395450033954Mouse
26884423Zlq10_mzygomatic length QTL 10, 16 week (mouse)152060008650763396Mouse
14928313Manh78_mmandible shape 78 (mouse)152148464155484641Mouse
12859289Criq3_mCitrobacter rodentium infection QTL 3 (mouse)152259376556593765Mouse
4142160Femwf10_mfemur work to failure 10 (mouse)Not determined2289301456893160Mouse
1301557Bbaa22_mB.burgdorferi-associated arthritis 22 (mouse)Not determined152446257258462805Mouse
1300967Bdt6_mbone density traits 6 (mouse)Not determined152529580659295928Mouse
4141409Radsvq1_mradiation sensitivity QTL 1 (mouse)Not determined2548497859484978Mouse
1301760Dob9_mdietary obesity 9 (mouse)Body fat amountadiposity index152603568037781301Mouse
1300772Bglq16_mbody growth late QTL 16 (mouse)Not determined152631178060311880Mouse
1301345Bgeq14_mbody growth early QTL 14 (mouse)Not determined152631178060311880Mouse
1357514Mbis3_mMycobacterium bovis-induced systemic lupus erythematosus 3 (mouse)Not determined162631178060311880Mouse
1301406Egrd2_mearly growth rate (mouse)Not determined152631178060311880Mouse
27226800Scvln20_msacral vertebrae length 2, 16 week (mouse)152660008666371849Mouse
1301450Bpq6_mblood pressure QTL 6 (mouse)Not determined152828264662282739Mouse
1357512Bsbob5_mBSB obesity 5 (mouse)Not determined152828264662282739Mouse
26884425Cvht2_mcranial vault height 2, 5 week (mouse)1528800146102008435Mouse
26884392Humsd8_mhumerus midshaft diameter 8, 16 week (mouse)152930014676084200Mouse
26884452Sklq17_mskull length QTL 17, 16 week (mouse)153020014657963396Mouse
1558985Eae32_mexperimental allergic encephalomyelitis susceptibility 32 (mouse)Not determined1532578416103425899Mouse
13432182Rotst1_mrotarod training saline time 1 (mouse)153397039134770391Mouse
1300578Cd8ts3_mCD8 T cell subset 3 (mouse)Not determined153400469468004804Mouse


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001357925 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001357926 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_026002 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006520149 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006520151 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006520152 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017316728 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017316729 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017316730 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017316731 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030248710 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036159548 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC149588 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF501309 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK009253 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK011808 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK029915 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK034836 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK035302 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK087486 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK137182 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK151269 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK151810 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK156119 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK161321 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK171976 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK183641 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK218970 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY553638 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC023115 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC036994 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC049700 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC138858 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC138859 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466541 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSMUST00000022865   ⟹   ENSMUSP00000022865
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1534,082,865 - 34,145,770 (+)Ensembl
GRCm38.p6 Ensembl1534,082,719 - 34,145,624 (+)Ensembl
RefSeq Acc Id: ENSMUST00000163333   ⟹   ENSMUSP00000130190
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1534,083,454 - 34,141,289 (+)Ensembl
GRCm38.p6 Ensembl1534,083,308 - 34,141,143 (+)Ensembl
RefSeq Acc Id: ENSMUST00000163697
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1534,082,871 - 34,124,498 (+)Ensembl
GRCm38.p6 Ensembl1534,082,725 - 34,124,352 (+)Ensembl
RefSeq Acc Id: ENSMUST00000168991   ⟹   ENSMUSP00000129500
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1534,083,182 - 34,134,490 (+)Ensembl
GRCm38.p6 Ensembl1534,083,036 - 34,134,344 (+)Ensembl
RefSeq Acc Id: ENSMUST00000169905   ⟹   ENSMUSP00000131814
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1534,115,088 - 34,140,856 (+)Ensembl
GRCm38.p6 Ensembl1534,114,942 - 34,140,710 (+)Ensembl
RefSeq Acc Id: ENSMUST00000170050   ⟹   ENSMUSP00000128288
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1534,083,465 - 34,136,957 (+)Ensembl
GRCm38.p6 Ensembl1534,083,319 - 34,136,811 (+)Ensembl
RefSeq Acc Id: ENSMUST00000170553   ⟹   ENSMUSP00000126167
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1534,083,468 - 34,123,896 (+)Ensembl
GRCm38.p6 Ensembl1534,083,322 - 34,123,750 (+)Ensembl
RefSeq Acc Id: ENSMUST00000171711
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1534,133,636 - 34,141,429 (+)Ensembl
GRCm38.p6 Ensembl1534,133,490 - 34,141,283 (+)Ensembl
RefSeq Acc Id: ENSMUST00000172082
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1534,082,840 - 34,103,491 (+)Ensembl
GRCm38.p6 Ensembl1534,082,694 - 34,103,345 (+)Ensembl
RefSeq Acc Id: ENSMUST00000172083
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1534,083,999 - 34,118,143 (+)Ensembl
GRCm38.p6 Ensembl1534,083,853 - 34,117,997 (+)Ensembl
RefSeq Acc Id: ENSMUST00000226331
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1534,114,233 - 34,115,348 (+)Ensembl
GRCm38.p6 Ensembl1534,114,087 - 34,115,202 (+)Ensembl
RefSeq Acc Id: ENSMUST00000226992   ⟹   ENSMUSP00000154553
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1534,131,310 - 34,140,889 (+)Ensembl
GRCm38.p6 Ensembl1534,131,164 - 34,140,743 (+)Ensembl
RefSeq Acc Id: NM_001357925   ⟹   NP_001344854
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391534,082,865 - 34,143,683 (+)NCBI
GRCm381534,082,719 - 34,143,537 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001357926   ⟹   NP_001344855
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391534,082,865 - 34,143,683 (+)NCBI
GRCm381534,082,719 - 34,143,537 (+)NCBI
Sequence:
RefSeq Acc Id: NM_026002   ⟹   NP_080278
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391534,082,865 - 34,143,683 (+)NCBI
GRCm381534,082,719 - 34,143,537 (+)NCBI
MGSCv371534,012,474 - 34,072,140 (+)RGD
Celera1534,707,184 - 34,766,810 (+)RGD
cM Map15 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006520149   ⟹   XP_006520212
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391534,082,613 - 34,143,683 (+)NCBI
GRCm381534,082,442 - 34,143,537 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006520151   ⟹   XP_006520214
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391534,082,613 - 34,143,683 (+)NCBI
GRCm381534,082,442 - 34,143,537 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006520152   ⟹   XP_006520215
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391534,082,613 - 34,143,683 (+)NCBI
GRCm381534,082,442 - 34,143,537 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017316728   ⟹   XP_017172217
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391534,082,613 - 34,143,683 (+)NCBI
GRCm381534,082,442 - 34,143,537 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017316729   ⟹   XP_017172218
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391534,082,613 - 34,143,683 (+)NCBI
GRCm381534,082,442 - 34,143,537 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017316730   ⟹   XP_017172219
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391534,082,613 - 34,143,683 (+)NCBI
GRCm381534,082,442 - 34,143,537 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017316731   ⟹   XP_017172220
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391534,082,613 - 34,143,683 (+)NCBI
GRCm381534,082,442 - 34,143,537 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030248710   ⟹   XP_030104570
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391534,082,833 - 34,143,683 (+)NCBI
GRCm381534,082,687 - 34,143,537 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036159548   ⟹   XP_036015441
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391534,082,833 - 34,143,683 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001344854 (Get FASTA)   NCBI Sequence Viewer  
  NP_001344855 (Get FASTA)   NCBI Sequence Viewer  
  NP_080278 (Get FASTA)   NCBI Sequence Viewer  
  XP_006520212 (Get FASTA)   NCBI Sequence Viewer  
  XP_006520214 (Get FASTA)   NCBI Sequence Viewer  
  XP_006520215 (Get FASTA)   NCBI Sequence Viewer  
  XP_017172217 (Get FASTA)   NCBI Sequence Viewer  
  XP_017172218 (Get FASTA)   NCBI Sequence Viewer  
  XP_017172219 (Get FASTA)   NCBI Sequence Viewer  
  XP_017172220 (Get FASTA)   NCBI Sequence Viewer  
  XP_030104570 (Get FASTA)   NCBI Sequence Viewer  
  XP_036015441 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH23115 (Get FASTA)   NCBI Sequence Viewer  
  AAH36994 (Get FASTA)   NCBI Sequence Viewer  
  AAI38859 (Get FASTA)   NCBI Sequence Viewer  
  AAI38860 (Get FASTA)   NCBI Sequence Viewer  
  AAP30790 (Get FASTA)   NCBI Sequence Viewer  
  AAS68097 (Get FASTA)   NCBI Sequence Viewer  
  BAB27854 (Get FASTA)   NCBI Sequence Viewer  
  BAC26673 (Get FASTA)   NCBI Sequence Viewer  
  BAC29022 (Get FASTA)   NCBI Sequence Viewer  
  BAE30256 (Get FASTA)   NCBI Sequence Viewer  
  BAE30709 (Get FASTA)   NCBI Sequence Viewer  
  BAE42756 (Get FASTA)   NCBI Sequence Viewer  
  EDL08857 (Get FASTA)   NCBI Sequence Viewer  
  EDL08858 (Get FASTA)   NCBI Sequence Viewer  
  EDL08859 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000022865
  ENSMUSP00000022865.10
  ENSMUSP00000126167.2
  ENSMUSP00000128288.2
  ENSMUSP00000129500.2
  ENSMUSP00000130190
  ENSMUSP00000130190.3
  ENSMUSP00000131814
  ENSMUSP00000131814.2
  ENSMUSP00000154553.2
GenBank Protein Q80WJ7 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_080278   ⟸   NM_026002
- Peptide Label: isoform 3
- UniProtKB: Q8CGI7 (UniProtKB/Swiss-Prot),   Q8CDL0 (UniProtKB/Swiss-Prot),   Q8CBT9 (UniProtKB/Swiss-Prot),   Q8BN67 (UniProtKB/Swiss-Prot),   Q3UAQ8 (UniProtKB/Swiss-Prot),   Q3U9F8 (UniProtKB/Swiss-Prot),   Q05CM0 (UniProtKB/Swiss-Prot),   B2RSG8 (UniProtKB/Swiss-Prot),   Q9D052 (UniProtKB/Swiss-Prot),   Q80WJ7 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006520214   ⟸   XM_006520151
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_006520215   ⟸   XM_006520152
- Peptide Label: isoform X7
- UniProtKB: F6QHD1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006520212   ⟸   XM_006520149
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_017172218   ⟸   XM_017316729
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_017172220   ⟸   XM_017316731
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: XP_017172217   ⟸   XM_017316728
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_017172219   ⟸   XM_017316730
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_030104570   ⟸   XM_030248710
- Peptide Label: isoform X8
- UniProtKB: F6ZSG0 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001344855   ⟸   NM_001357926
- Peptide Label: isoform 1
RefSeq Acc Id: NP_001344854   ⟸   NM_001357925
- Peptide Label: isoform 2
RefSeq Acc Id: ENSMUSP00000126167   ⟸   ENSMUST00000170553
RefSeq Acc Id: ENSMUSP00000128288   ⟸   ENSMUST00000170050
RefSeq Acc Id: ENSMUSP00000130190   ⟸   ENSMUST00000163333
RefSeq Acc Id: ENSMUSP00000129500   ⟸   ENSMUST00000168991
RefSeq Acc Id: ENSMUSP00000022865   ⟸   ENSMUST00000022865
RefSeq Acc Id: ENSMUSP00000154553   ⟸   ENSMUST00000226992
RefSeq Acc Id: ENSMUSP00000131814   ⟸   ENSMUST00000169905
RefSeq Acc Id: XP_036015441   ⟸   XM_036159548
- Peptide Label: isoform X9
- UniProtKB: F6ZSG0 (UniProtKB/TrEMBL)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q80WJ7-F1-model_v2 AlphaFold Q80WJ7 1-579 view protein structure

Promoters
RGD ID:6826229
Promoter ID:MM_KWN:18218
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:NM_026002,   UC007VLF.1,   UC007VLG.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361534,012,051 - 34,012,672 (+)MPROMDB
RGD ID:6825724
Promoter ID:MM_KWN:18220
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day6,   BoneMarrow_2Hour
Transcripts:UC007VLI.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361534,070,561 - 34,072,457 (+)MPROMDB
RGD ID:8683552
Promoter ID:EPDNEW_M19806
Type:initiation region
Name:Mtdh_1
Description:Mus musculus metadherin , transcript variant 3, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381534,082,716 - 34,082,776EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1914404 AgrOrtholog
Ensembl Genes ENSMUSG00000022255 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000022865 ENTREZGENE
  ENSMUST00000022865.17 UniProtKB/Swiss-Prot
  ENSMUST00000163333 ENTREZGENE
  ENSMUST00000163333.9 UniProtKB/TrEMBL
  ENSMUST00000168991.8 UniProtKB/TrEMBL
  ENSMUST00000169905 ENTREZGENE
  ENSMUST00000169905.2 UniProtKB/TrEMBL
  ENSMUST00000170050.8 UniProtKB/TrEMBL
  ENSMUST00000170553.8 UniProtKB/TrEMBL
  ENSMUST00000226992.2 UniProtKB/TrEMBL
InterPro LYRIC UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:67154 UniProtKB/Swiss-Prot
MGD MGI:1914404 ENTREZGENE
NCBI Gene 67154 ENTREZGENE
PANTHER LYSINE-RICH CEACAM1 CO-ISOLATED PROTEIN LYRIC PROTEIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PROTEIN LYRIC UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam LYRIC UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Mtdh PhenoGen
UniProt A0A2I3BRF4_MOUSE UniProtKB/TrEMBL
  B2RSG8 ENTREZGENE
  E9PUX0_MOUSE UniProtKB/TrEMBL
  F6QFT1_MOUSE UniProtKB/TrEMBL
  F6QHD1 ENTREZGENE, UniProtKB/TrEMBL
  F6ZQL0_MOUSE UniProtKB/TrEMBL
  F6ZSG0 ENTREZGENE, UniProtKB/TrEMBL
  LYRIC_MOUSE UniProtKB/Swiss-Prot
  Q05CM0 ENTREZGENE
  Q3TAB3_MOUSE UniProtKB/TrEMBL
  Q3U9F8 ENTREZGENE
  Q3UAQ8 ENTREZGENE
  Q80WJ7 ENTREZGENE
  Q8BN67 ENTREZGENE
  Q8CBT9 ENTREZGENE
  Q8CDL0 ENTREZGENE
  Q8CGI7 ENTREZGENE
  Q9D052 ENTREZGENE
UniProt Secondary B2RSG8 UniProtKB/Swiss-Prot
  Q05CM0 UniProtKB/Swiss-Prot
  Q3U9F8 UniProtKB/Swiss-Prot
  Q3UAQ8 UniProtKB/Swiss-Prot
  Q8BN67 UniProtKB/Swiss-Prot
  Q8CBT9 UniProtKB/Swiss-Prot
  Q8CDL0 UniProtKB/Swiss-Prot
  Q8CGI7 UniProtKB/Swiss-Prot
  Q9D052 UniProtKB/Swiss-Prot