Atg13 (autophagy related 13) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Atg13 (autophagy related 13) Mus musculus
Analyze
Symbol: Atg13
Name: autophagy related 13
RGD ID: 1332180
MGI Page MGI
Description: Predicted to enable protein kinase binding activity and protein serine/threonine kinase activator activity. Involved in several processes, including macroautophagy; positive regulation of autophagy; and response to mitochondrial depolarisation. Located in cytosol and phagophore assembly site. Part of Atg1/ULK1 kinase complex. Is expressed in several structures, including alimentary system; brain; cardiovascular system; genitourinary system; and respiratory system. Orthologous to human ATG13 (autophagy related 13).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 1110053A20Rik; ATG13 autophagy related 13 homolog; autophagy-related protein 13; D2Ertd391; D2Ertd391e; Harbi1; RP23-12H6.2
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39291,504,957 - 91,540,947 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl291,504,963 - 91,540,921 (-)EnsemblGRCm39 Ensembl
GRCm38291,674,612 - 91,710,597 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl291,674,618 - 91,710,576 (-)EnsemblGRCm38mm10GRCm38
MGSCv37291,514,782 - 91,550,733 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36291,475,464 - 91,511,415 (-)NCBIMGSCv36mm8
Celera293,064,097 - 93,099,336 (-)NCBICelera
Cytogenetic Map2E1NCBI
cM Map250.63NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
2. PID Annotation Import Pipeline Pipeline to import Pathway Interaction Database annotations from NCI into RGD
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
5. Hepatic interferon regulatory factor 8 expression mediates liver ischemia/reperfusion injury in mice. Shi G, etal., Biochem Pharmacol. 2021 Oct;192:114728. doi: 10.1016/j.bcp.2021.114728. Epub 2021 Aug 13.
6. Mammalian autophagy: core molecular machinery and signaling regulation. Yang Z and Klionsky DJ, Curr Opin Cell Biol. 2010 Apr;22(2):124-31. Epub 2009 Dec 23.
Additional References at PubMed
PMID:7671812   PMID:10349636   PMID:10725249   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11125038   PMID:11217851   PMID:11544199   PMID:12466851   PMID:12477932   PMID:12693553  
PMID:12904583   PMID:14610273   PMID:15745951   PMID:15782199   PMID:16141072   PMID:16141073   PMID:17967808   PMID:18799693   PMID:18936157   PMID:19211835   PMID:19225151   PMID:19258318  
PMID:21258367   PMID:21267068   PMID:21795849   PMID:21855797   PMID:21873635   PMID:23392225   PMID:24194600   PMID:25915474   PMID:26030876   PMID:26213203   PMID:26644405   PMID:26801615  
PMID:27304681   PMID:29099309   PMID:29173006   PMID:29880830   PMID:30409884   PMID:32554809   PMID:32968282   PMID:35670107   PMID:35957534   PMID:36198274   PMID:38355793  


Genomics

Comparative Map Data
Atg13
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39291,504,957 - 91,540,947 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl291,504,963 - 91,540,921 (-)EnsemblGRCm39 Ensembl
GRCm38291,674,612 - 91,710,597 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl291,674,618 - 91,710,576 (-)EnsemblGRCm38mm10GRCm38
MGSCv37291,514,782 - 91,550,733 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36291,475,464 - 91,511,415 (-)NCBIMGSCv36mm8
Celera293,064,097 - 93,099,336 (-)NCBICelera
Cytogenetic Map2E1NCBI
cM Map250.63NCBI
ATG13
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381146,617,553 - 46,674,518 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1146,617,527 - 46,674,818 (+)EnsemblGRCh38hg38GRCh38
GRCh371146,639,103 - 46,696,068 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361146,595,703 - 46,652,644 (+)NCBINCBI36Build 36hg18NCBI36
Celera1146,786,959 - 46,844,582 (+)NCBICelera
Cytogenetic Map11p11.2NCBI
HuRef1146,345,178 - 46,403,609 (+)NCBIHuRef
CHM1_11146,637,238 - 46,695,980 (+)NCBICHM1_1
T2T-CHM13v2.01146,773,592 - 46,830,534 (+)NCBIT2T-CHM13v2.0
Atg13
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8398,102,831 - 98,136,741 (-)NCBIGRCr8
mRatBN7.2377,647,069 - 77,681,028 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl377,645,790 - 77,681,043 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx381,122,107 - 81,156,207 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0389,721,130 - 89,755,231 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0387,572,391 - 87,606,504 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0380,580,549 - 80,614,554 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl380,581,247 - 80,601,410 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0387,279,649 - 87,313,654 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4376,056,642 - 76,090,287 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1375,953,473 - 75,986,537 (-)NCBI
Celera376,851,283 - 76,885,195 (-)NCBICelera
Cytogenetic Map3q24NCBI
Atg13
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554221,398,593 - 1,432,438 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554221,398,646 - 1,432,440 (-)NCBIChiLan1.0ChiLan1.0
ATG13
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2948,833,991 - 48,878,284 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11148,840,876 - 48,898,053 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01146,567,728 - 46,623,609 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11147,126,380 - 47,182,848 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1147,126,380 - 47,182,850 (+)Ensemblpanpan1.1panPan2
ATG13
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11842,834,538 - 42,886,873 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1842,836,755 - 42,886,855 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1841,563,260 - 41,615,540 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01843,490,641 - 43,542,934 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1843,482,301 - 43,542,937 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11842,975,663 - 43,027,961 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01842,531,296 - 42,583,663 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01843,260,591 - 43,313,187 (-)NCBIUU_Cfam_GSD_1.0
Atg13
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494720,311,338 - 20,361,623 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365622,423,001 - 2,473,232 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365622,424,398 - 2,473,103 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ATG13
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl215,856,860 - 15,916,109 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1215,856,859 - 15,916,122 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2217,207,885 - 17,266,756 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ATG13
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1118,651,872 - 18,712,395 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl118,652,998 - 18,712,482 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666038115,936,173 - 115,995,623 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Atg13
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247671,924,672 - 1,953,868 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Atg13
1811 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:2267
Count of miRNA genes:675
Interacting mature miRNAs:816
Transcripts:ENSMUST00000028678, ENSMUST00000076803, ENSMUST00000126000, ENSMUST00000136412, ENSMUST00000139548, ENSMUST00000153631
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
13824983Vclq1_mcurvilinear velocity QTL 1 (mouse)261830344136841920Mouse
4141236Hbnr5_mHeligmosomoides bakeri nematode resistance 5 (mouse)Not determined31214567105143570Mouse
1302174Dssc2_mdextran sodium sulfate induced colitis QTL2 (mouse)Not determined224224632148700377Mouse
1301405Etohr_methanol response acute (mouse)Not determined26300595497006113Mouse
1301660Iba1_minduction of brown adipocytes 1 (mouse)Not determined267647887101648142Mouse
1558915W3q1_mweight 3 weeks QTL 1 (mouse)Not determined220897778118894840Mouse
11532731Sluc31a_msusceptibility to lung cancer 31a (mouse)288015003122015170Mouse
1301769Orgwq2_morgan weight QTL 2 (mouse)Not determined2388712693421651Mouse
1357454Kidq1_mkidney weight QTL 1 (mouse)Not determined220897778118894840Mouse
1357577Trmq3_mT cell ratio modifier QTL 3 (mouse)Not determined260520612119355518Mouse
1558966W10q9_mweight 10 weeks QTL 9 (mouse)Not determined220897778118894840Mouse
4141854T2dm2sa_mtype 2 diabetes mellitus 2 in SMXA RI mice (mouse)Not determined229307947148374934Mouse
1300662Etohila_methanol induced locomotor activity (mouse)Not determined26300595497006113Mouse
10053681Lith24_mlithogenic gene 24 (mouse)Not determined26300595497006113Mouse
1301048Actre2_mactivity response to ethanol 2 (mouse)Not determined26300595497006113Mouse
10412082Hylaq1_mHyperlocomotor activity related QTL 1 (mouse)Not determined284013198148667470Mouse
1357881Estoq1_membryo survival total QTL 1 (mouse)Not determined220897778118894840Mouse
5491197Mobq5_mmultigenic obesity QTL 5 (mouse)Not determined265269746162518926Mouse
1301948Elsgp3_melevated serum gp70 3 (mouse)Not determined268724269102724407Mouse
5491196Mobq6_mmultigenic obesity QTL 6 (mouse)Not determined285724269180896594Mouse
15092054Egrme5_mearly growth rate, maternal effect 5 (mouse)282190187118004745Mouse
4142223Femwf4_mfemur work to failure 4 (mouse)Not determined88143423122143570Mouse
4142088Parms1_mpatched associated RMS 1 (mouse)Not determined74524117114123532Mouse
12738429Lfibq18_mliver fibrosis QTL 18 (mouse)25791999191919991Mouse
11038697Ltpr2d_mLeishmania tropica response 2d (mouse)286095716120095823Mouse
11038698Ltpr2c_mLeishmania tropica response 2c (mouse)286095716120095823Mouse
39128209Lwq14_mliver weight QTL 14 (mouse)220897778118894840Mouse
1558738W6q1_mweight 6 weeks QTL 1 (mouse)Not determined220897778118894840Mouse
11528549Sluc31_msusceptibility to lung cancer 31 (mouse)274524117129213005Mouse
1301703Bomd3_mbone mineral density 3 (mouse)Not determined26300595497006113Mouse
1301834Bits1_mbitterness sensitivity 1 (mouse)Not determined287440643121440778Mouse
4141155Plast2b_mplasma plant sterol 2b (mouse)Not determined284013198148522175Mouse
4141406Alpq2_malcohol preference QTL 2 (mouse)Not determined25752411791524288Mouse
1301873Hsl1_mhyperoxia susceptibility locus 1 (mouse)Not determined26357015497570301Mouse
1558901Skmw8_mskeletal muscle weight 8 (mouse)Not determined284008488118008593Mouse
1558899Egq1_mearly growth QTL 1 (mouse)Not determined220897778118894840Mouse
1357681Hrtq1_mheart weight QTL 1 (mouse)Not determined220897778118894840Mouse
1301109Dntcs2_mdental caries susceptibility 2 (mouse)Not determined240885493114910165Mouse
4141657Mohg1_mmodifier of hg 1 (mouse)Not determined276678758103095823Mouse
1300852Lmr14_mleishmaniasis resistance 14 (mouse)Not determined286095716120095823Mouse
1357436Splq1_mspleen weight QTL 1 (mouse)Not determined220897778118894840Mouse
1301882Etohc2_methanol consumption 2 (mouse)Not determined268724269102724407Mouse
1301374Cplaq7_mcircadian period of locomotor activity 7 (mouse)Not determined276421483110421651Mouse
10043894Bw22_mbody weight QTL 22 (mouse)Not determined280895334114895334Mouse
1301344Lith1_mlithogenic gene 1 (mouse)Not determined245347635145312647Mouse
11049565Lmr28g_mleishmaniasis resistance 28g (mouse)286095716120095823Mouse
13463482Mchq17_mmean corpuscular hemoglobin QTL 17 (mouse)267647887101648142Mouse
1301098Cd8mts3_mCD8 memory T cell subset 3 (mouse)Not determined291089974125090104Mouse
10044002Hdl7_mHDL level 7 (mouse)Not determined26300595497006113Mouse

Markers in Region
RH125946  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38291,672,030 - 91,672,247UniSTSGRCm38
MGSCv37291,512,187 - 91,512,404UniSTSGRCm37
Celera293,061,494 - 93,061,711UniSTS
Cytogenetic Map2E1UniSTS
Whitehead/MRC_RH21271.49UniSTS
RH127124  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38291,674,638 - 91,674,845UniSTSGRCm38
MGSCv37291,514,795 - 91,515,002UniSTSGRCm37
Celera293,064,110 - 93,064,317UniSTS
Cytogenetic Map2E1UniSTS
cM Map2 UniSTS
Whitehead/MRC_RH21270.29UniSTS
D10Mit157.2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map6D1UniSTS
Cytogenetic Map16B4UniSTS
Cytogenetic Map18E2UniSTS
Cytogenetic Map4C3UniSTS
Cytogenetic Map7B2UniSTS
Cytogenetic Map4D2.3UniSTS
Cytogenetic Map11E1UniSTS
Cytogenetic Map14E2.2UniSTS
Cytogenetic Map4C7UniSTS
Cytogenetic Map2H4UniSTS
Cytogenetic Map1FUniSTS
Cytogenetic Map6C3UniSTS
Cytogenetic Map11DUniSTS
Cytogenetic Map3G2UniSTS
Cytogenetic Map17A1UniSTS
Cytogenetic Map9F2UniSTS
Cytogenetic Map12F1UniSTS
Cytogenetic Map19C2UniSTS
Cytogenetic Map3BUniSTS
Cytogenetic Map8C1UniSTS
Cytogenetic Map18A2UniSTS
Cytogenetic Map3F2UniSTS
Cytogenetic Map14C3UniSTS
Cytogenetic Map8E1UniSTS
Cytogenetic Map8E2UniSTS
Cytogenetic Map5B1UniSTS
Cytogenetic Map18B1UniSTS
Cytogenetic Map9CUniSTS
Cytogenetic Map14C2UniSTS
Cytogenetic Map6A1UniSTS
Cytogenetic Map10B4UniSTS
Cytogenetic Map13D2.1UniSTS
Cytogenetic Map5E5UniSTS
Cytogenetic Map11B1.3UniSTS
Cytogenetic Map4D1UniSTS
Cytogenetic Map9A5.2UniSTS
Cytogenetic Map3F1UniSTS
Cytogenetic Map17E3UniSTS
Cytogenetic Map11B3UniSTS
Cytogenetic Map1H4UniSTS
Cytogenetic Map6A3UniSTS
Cytogenetic Map5E4-E5UniSTS
Cytogenetic Map15E1UniSTS
Cytogenetic Map13DUniSTS
Cytogenetic Map14BUniSTS
Cytogenetic Map14D1UniSTS
Cytogenetic Map7B4UniSTS
Cytogenetic Map8D3UniSTS
Cytogenetic MapXDUniSTS
Cytogenetic Map17A3.3UniSTS
Cytogenetic Map7E2UniSTS
Cytogenetic Map1H2.3UniSTS
Cytogenetic Map7A2UniSTS
Cytogenetic Map7F3UniSTS
Cytogenetic Map9F1UniSTS
Cytogenetic Map10C1UniSTS
Cytogenetic Map4E2UniSTS
Cytogenetic Map16A1UniSTS
Cytogenetic Map8B3.3UniSTS
Cytogenetic Map8D2UniSTS
Cytogenetic Map3DUniSTS
Cytogenetic Map15D2UniSTS
Cytogenetic Map17B1UniSTS
Cytogenetic Map7A3UniSTS
Cytogenetic Map15F1UniSTS
Cytogenetic Map16B2UniSTS
Cytogenetic Map7CUniSTS
Cytogenetic Map3F2.1UniSTS
Cytogenetic Map6F3UniSTS
Cytogenetic Map1C4UniSTS
Cytogenetic Map11E2UniSTS
Cytogenetic Map11B5UniSTS
Cytogenetic Map9F3UniSTS
Cytogenetic Map2BUniSTS
Cytogenetic Map13B3UniSTS
Cytogenetic Map9A4UniSTS
Cytogenetic Map5A3UniSTS
Cytogenetic Map2H1UniSTS
Cytogenetic Map16B1UniSTS
Cytogenetic Map1A5UniSTS
Cytogenetic Map11CUniSTS
Cytogenetic Map9E1UniSTS
Cytogenetic Map6G1UniSTS
Cytogenetic MapXA2UniSTS
Cytogenetic Map13B1UniSTS
Cytogenetic Map5E2UniSTS
Cytogenetic Map12C1UniSTS
Cytogenetic Map5FUniSTS
Cytogenetic Map4D3UniSTS
Cytogenetic Map10C2UniSTS
Cytogenetic Map9BUniSTS
Cytogenetic Map5G2UniSTS
Cytogenetic Map7F1UniSTS
Cytogenetic Map12C3UniSTS
Cytogenetic Map10A4UniSTS
Cytogenetic Map8A2UniSTS
Cytogenetic Map18A1UniSTS
Cytogenetic Map12A1.1UniSTS
Cytogenetic Map1C2UniSTS
Cytogenetic Map11B2UniSTS
Cytogenetic Map6E3UniSTS
Cytogenetic Map5C3.3UniSTS
Cytogenetic Map1BUniSTS
Cytogenetic Map17A3.1UniSTS
Cytogenetic Map7A1UniSTS
Cytogenetic Map2E5UniSTS
Cytogenetic Map11A1UniSTS
Cytogenetic Map4B1UniSTS
Cytogenetic Map15A2UniSTS
Cytogenetic Map8C3UniSTS
Cytogenetic Map2A3UniSTS
Cytogenetic Map5G3UniSTS
Cytogenetic Map4A3UniSTS
Cytogenetic Map2H3UniSTS
Cytogenetic Map8A1UniSTS
Cytogenetic Map8A1.1UniSTS
Cytogenetic Map16A3UniSTS
Cytogenetic Map10B1UniSTS
Cytogenetic Map19AUniSTS
Cytogenetic Map10A1UniSTS
Cytogenetic Map13D1UniSTS
Cytogenetic Map4A1UniSTS
Cytogenetic Map9A3UniSTS
Cytogenetic Map17CUniSTS
Cytogenetic Map1DUniSTS
Cytogenetic Map5E3UniSTS
Cytogenetic Map15D3UniSTS
Cytogenetic Map2H2UniSTS
Cytogenetic Map7D3UniSTS
Cytogenetic Map2A1UniSTS
Cytogenetic Map14C1UniSTS
Cytogenetic Map14E5UniSTS
Cytogenetic Map10CUniSTS
Cytogenetic Map18B2UniSTS
Cytogenetic Map2F1UniSTS
Cytogenetic Map10D3UniSTS
Cytogenetic Map17A2UniSTS
Cytogenetic Map2C3UniSTS
Cytogenetic Map1C3UniSTS
Cytogenetic Map17B2UniSTS
Cytogenetic Map5B2UniSTS
Cytogenetic Map5G1UniSTS
Cytogenetic Map4C6UniSTS
Cytogenetic Map13C3UniSTS
Cytogenetic Map2E1UniSTS
Cytogenetic Map17A3.2-A3.3UniSTS
Cytogenetic Map19C3UniSTS
Cytogenetic Map7E3UniSTS
Cytogenetic Map13C1UniSTS
Cytogenetic Map9E3.1UniSTS
Cytogenetic Map15E3UniSTS
Cytogenetic Map6B1UniSTS
Cytogenetic MapXE3UniSTS
Cytogenetic Map4C4UniSTS
Cytogenetic Map3E3UniSTS
Cytogenetic Map11A4UniSTS
Cytogenetic Map4C5UniSTS
Cytogenetic Map18B3UniSTS
Cytogenetic Map9A2UniSTS
Cytogenetic Map7E1UniSTS
Cytogenetic Map5D-E1UniSTS
Cytogenetic Map5B3UniSTS
Cytogenetic Map13A2-A3UniSTS
Cytogenetic Map5A2UniSTS
Cytogenetic Map4B3UniSTS
Cytogenetic Map1E4UniSTS
Cytogenetic Map17E4UniSTS
Cytogenetic Map1G2UniSTS
Cytogenetic Map15B3.1UniSTS
Cytogenetic Map12EUniSTS
Cytogenetic MapXA5UniSTS
Cytogenetic Map6A3.3UniSTS
Cytogenetic Map6G3UniSTS
Cytogenetic Map6F2UniSTS
Cytogenetic Map5C1UniSTS
Cytogenetic Map4D2.1UniSTS
Cytogenetic Map4A5UniSTS
Cytogenetic Map3F2.2UniSTS
Cytogenetic Map1E3-E4UniSTS
Cytogenetic Map9F1-F3UniSTS
Cytogenetic Map1C1.1UniSTS
Cytogenetic Map14D2UniSTS
Cytogenetic Map12A2UniSTS
Cytogenetic Map17A3-BUniSTS
Cytogenetic Map7F5UniSTS
Cytogenetic Map14A3UniSTS
Cytogenetic Map5G1.1UniSTS
Cytogenetic MapXF2-F4UniSTS
Cytogenetic Map7D2UniSTS
Cytogenetic Map2F3UniSTS
Cytogenetic Map10A3UniSTS
Cytogenetic MapXA7.3UniSTS
Cytogenetic Map9F1-F2UniSTS
Cytogenetic Map13A3.2UniSTS
Cytogenetic Map10A2UniSTS
Cytogenetic Map1C1UniSTS
Cytogenetic Map1A1UniSTS
Cytogenetic Map12D3UniSTS
Cytogenetic Map1A3-A5UniSTS
Cytogenetic Map2A2UniSTS
Cytogenetic Map3A1UniSTS
Cytogenetic MapXA3.3UniSTS
Cytogenetic Map16A-B1UniSTS
Cytogenetic Map1D2.3UniSTS
Cytogenetic Map6B2.3UniSTS
Cytogenetic Map2G3UniSTS
Cytogenetic MapXA2-A3.1UniSTS
Cytogenetic Map9A5.3UniSTS
Cytogenetic Map14A2-BUniSTS
Cytogenetic Map8E1-E2UniSTS
Cytogenetic Map8A3UniSTS
Cytogenetic Map1G3-H1UniSTS
Cytogenetic Map8B3-C1UniSTS
Cytogenetic Map19C1UniSTS
Cytogenetic Map8C5UniSTS
Cytogenetic Map8A4UniSTS
Cytogenetic Map15F3UniSTS
Cytogenetic Map14E4UniSTS
Cytogenetic Map4D2.2UniSTS
Cytogenetic MapXF5UniSTS
cM Map1040.0UniSTS
Whitehead Genetic1033.9UniSTS


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001355416 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001355417 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001355418 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001355419 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001355420 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001355421 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_145528 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006499892 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AI574380 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK004234 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK083702 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK085328 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK122339 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK149672 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK154470 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK162732 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK163962 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK171206 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK171440 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK179968 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK181445 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK184073 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK184342 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK185658 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK188453 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK198322 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK198575 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK202017 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK203934 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK215173 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL714023 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC016669 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC023673 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC023712 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC024457 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC033419 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466519 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000028678   ⟹   ENSMUSP00000028678
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl291,504,964 - 91,540,864 (-)Ensembl
GRCm38.p6 Ensembl291,674,619 - 91,710,519 (-)Ensembl
Ensembl Acc Id: ENSMUST00000076803   ⟹   ENSMUSP00000076081
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl291,504,963 - 91,540,921 (-)Ensembl
GRCm38.p6 Ensembl291,674,618 - 91,710,576 (-)Ensembl
Ensembl Acc Id: ENSMUST00000126000
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl291,506,663 - 91,512,574 (-)Ensembl
GRCm38.p6 Ensembl291,676,318 - 91,682,229 (-)Ensembl
Ensembl Acc Id: ENSMUST00000136412
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl291,519,058 - 91,536,079 (-)Ensembl
GRCm38.p6 Ensembl291,688,713 - 91,705,734 (-)Ensembl
Ensembl Acc Id: ENSMUST00000139548
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl291,506,628 - 91,510,040 (-)Ensembl
GRCm38.p6 Ensembl291,676,283 - 91,679,695 (-)Ensembl
Ensembl Acc Id: ENSMUST00000153631
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl291,509,732 - 91,515,597 (-)Ensembl
GRCm38.p6 Ensembl291,679,387 - 91,685,252 (-)Ensembl
RefSeq Acc Id: NM_001355416   ⟹   NP_001342345
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39291,504,957 - 91,540,937 (-)NCBI
GRCm38291,674,612 - 91,710,592 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001355417   ⟹   NP_001342346
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39291,504,957 - 91,540,937 (-)NCBI
GRCm38291,674,612 - 91,710,592 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001355418   ⟹   NP_001342347
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39291,504,957 - 91,540,937 (-)NCBI
GRCm38291,674,612 - 91,710,592 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001355419   ⟹   NP_001342348
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39291,504,957 - 91,540,937 (-)NCBI
GRCm38291,674,612 - 91,710,592 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001355420   ⟹   NP_001342349
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39291,504,957 - 91,540,937 (-)NCBI
GRCm38291,674,612 - 91,710,592 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001355421   ⟹   NP_001342350
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39291,504,957 - 91,540,937 (-)NCBI
GRCm38291,674,612 - 91,710,592 (-)NCBI
Sequence:
RefSeq Acc Id: NM_145528   ⟹   NP_663503
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39291,504,957 - 91,540,937 (-)NCBI
GRCm38291,674,612 - 91,710,592 (-)NCBI
MGSCv37291,514,782 - 91,550,733 (-)RGD
Celera293,064,084 - 93,099,352 (-)ENTREZGENE
cM Map2 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006499892   ⟹   XP_006499955
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39291,504,965 - 91,540,947 (-)NCBI
GRCm38291,674,620 - 91,710,597 (-)NCBI
Sequence:
RefSeq Acc Id: NP_663503   ⟸   NM_145528
- Peptide Label: isoform 7
- UniProtKB: Q91YI1 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006499955   ⟸   XM_006499892
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: NP_001342349   ⟸   NM_001355420
- Peptide Label: isoform 5
RefSeq Acc Id: NP_001342350   ⟸   NM_001355421
- Peptide Label: isoform 6
RefSeq Acc Id: NP_001342348   ⟸   NM_001355419
- Peptide Label: isoform 4
- UniProtKB: Q91YI1 (UniProtKB/Swiss-Prot),   A2AH18 (UniProtKB/Swiss-Prot),   Q80TU9 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: NP_001342346   ⟸   NM_001355417
- Peptide Label: isoform 2
RefSeq Acc Id: NP_001342347   ⟸   NM_001355418
- Peptide Label: isoform 3
RefSeq Acc Id: NP_001342345   ⟸   NM_001355416
- Peptide Label: isoform 1
Ensembl Acc Id: ENSMUSP00000028678   ⟸   ENSMUST00000028678
Ensembl Acc Id: ENSMUSP00000076081   ⟸   ENSMUST00000076803

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q91YI1-F1-model_v2 AlphaFold Q91YI1 1-516 view protein structure

Promoters
RGD ID:6832345
Promoter ID:MM_KWN:30501
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day3,   3T3L1_Day4,   BoneMarrow_0Hour,   MEF_B4
Transcripts:OTTMUST00000033751,   OTTMUST00000033752
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36291,550,626 - 91,551,667 (-)MPROMDB
RGD ID:6877932
Promoter ID:EPDNEW_M2417
Type:initiation region
Name:Atg13_1
Description:Mus musculus autophagy related 13 , transcript variant 7, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38291,710,537 - 91,710,597EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1196429 AgrOrtholog
Ensembl Genes ENSMUSG00000027244 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000028678 ENTREZGENE
  ENSMUST00000028678.9 UniProtKB/Swiss-Prot
  ENSMUST00000076803 ENTREZGENE
  ENSMUST00000076803.12 UniProtKB/Swiss-Prot
Gene3D-CATH 3.30.900.10 UniProtKB/Swiss-Prot
InterPro ATG13 UniProtKB/Swiss-Prot
  Atg13_N UniProtKB/Swiss-Prot
  HORMA_dom_sf UniProtKB/Swiss-Prot
KEGG Report mmu:51897 UniProtKB/Swiss-Prot
MGD MGI:1196429 ENTREZGENE
NCBI Gene 51897 ENTREZGENE
PANTHER AUTOPHAGY-RELATED PROTEIN 13 UniProtKB/Swiss-Prot
  PTHR13430 UniProtKB/Swiss-Prot
Pfam ATG13 UniProtKB/Swiss-Prot
PhenoGen Atg13 PhenoGen
UniProt A2AH18 ENTREZGENE
  ATG13_MOUSE UniProtKB/Swiss-Prot
  Q80TU9 ENTREZGENE
  Q8K1C4_MOUSE UniProtKB/TrEMBL
  Q91YI1 ENTREZGENE
UniProt Secondary A2AH18 UniProtKB/Swiss-Prot
  Q80TU9 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2012-06-19 Atg13  autophagy related 13  Atg13  ATG13 autophagy related 13 homolog (S. cerevisiae)  Symbol and/or name change 5135510 APPROVED
2011-07-27 Atg13  ATG13 autophagy related 13 homolog (S. cerevisiae)  D2Ertd391e  DNA segment, Chr 2, ERATO Doi 391, expressed  Symbol and/or name change 5135510 APPROVED