Gsc (goosecoid homeobox) - Rat Genome Database

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Gene: Gsc (goosecoid homeobox) Mus musculus
Analyze
Symbol: Gsc
Name: goosecoid homeobox
RGD ID: 1332107
MGI Page MGI
Description: Enables DNA-binding transcription repressor activity, RNA polymerase II-specific; RNA polymerase II cis-regulatory region sequence-specific DNA binding activity; and RNA polymerase II-specific DNA-binding transcription factor binding activity. Involved in middle ear morphogenesis and negative regulation of transcription by RNA polymerase II. Acts upstream of or within several processes, including chordate embryonic development; negative regulation of Wnt signaling pathway; and signal transduction involved in regulation of gene expression. Part of transcription regulator complex. Is expressed in several structures, including alimentary system; forebrain; genitourinary system; limb; and sensory organ. Orthologous to human GSC (goosecoid homeobox).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: goos; homeobox protein goosecoid
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3912104,437,468 - 104,439,495 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl12104,437,468 - 104,439,589 (-)EnsemblGRCm39 Ensembl
GRCm3812104,471,209 - 104,473,236 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl12104,471,209 - 104,473,330 (-)EnsemblGRCm38mm10GRCm38
MGSCv3712105,709,419 - 105,711,446 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3612104,872,259 - 104,874,286 (-)NCBIMGSCv36mm8
Celera12105,702,296 - 105,704,323 (-)NCBICelera
Cytogenetic Map12ENCBI
cM Map1254.32NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
abnormal acetabulum morphology  (IAGP)
abnormal alisphenoid bone morphology  (IAGP)
abnormal anterior cardinal vein morphology  (IAGP)
abnormal basicranium morphology  (IAGP)
abnormal brain morphology  (IAGP)
abnormal breathing pattern  (IAGP)
abnormal craniofacial morphology  (IAGP)
abnormal dorsal aorta morphology  (IAGP)
abnormal dorsal-ventral axis patterning  (IAGP)
abnormal embryo development  (IAGP)
abnormal epitympanic recess morphology  (IAGP)
abnormal ethmoid bone morphology  (IAGP)
abnormal external auditory canal morphology  (IAGP)
abnormal extrinsic tongue muscle morphology  (IAGP)
abnormal eye development  (IAGP)
abnormal femur head morphology  (IAGP)
abnormal first pharyngeal arch artery morphology  (IAGP)
abnormal first pharyngeal arch morphology  (IAGP)
abnormal forebrain development  (IAGP)
abnormal frontal bone morphology  (IAGP)
abnormal genioglossus muscle morphology  (IAGP)
abnormal glenoid fossa morphology  (IAGP)
abnormal heart development  (IAGP)
abnormal heart looping  (IAGP)
abnormal hip joint morphology  (IAGP)
abnormal horizontal basal cell of olfactory epithelium morphology  (IAGP)
abnormal humerus morphology  (IAGP)
abnormal intrinsic tongue muscle morphology  (IAGP)
abnormal jaw morphology  (IAGP)
abnormal joint morphology  (IAGP)
abnormal malleus morphology  (IAGP)
abnormal mandible morphology  (IAGP)
abnormal mandibular angle morphology  (IAGP)
abnormal masticatory muscle morphology  (IAGP)
abnormal maxilla morphology  (IAGP)
abnormal Meckel's cartilage morphology  (IAGP)
abnormal middle ear morphology  (IAGP)
abnormal nasal capsule morphology  (IAGP)
abnormal nasal cavity morphology  (IAGP)
abnormal nasal mucosa morphology  (IAGP)
abnormal nasal septum morphology  (IAGP)
abnormal neural tube morphology  (IAGP)
abnormal nose morphology  (IAGP)
abnormal notochord morphology  (IAGP)
abnormal obturator foramen morphology  (IAGP)
abnormal optic vesicle formation  (IAGP)
abnormal palatine bone morphology  (IAGP)
abnormal pharyngeal arch morphology  (IAGP)
abnormal pharynx morphology  (IAGP)
abnormal presphenoid bone morphology  (IAGP)
abnormal pterygoid process morphology  (IAGP)
abnormal pubic symphysis morphology  (IAGP)
abnormal rib morphology  (IAGP)
abnormal scapular coracoid process morphology  (IAGP)
abnormal second pharyngeal arch morphology  (IAGP)
abnormal shoulder joint morphology  (IAGP)
abnormal sternocostal joint morphology  (IAGP)
abnormal suckling behavior  (IAGP)
abnormal trochanter morphology  (IAGP)
abnormal tympanic cavity morphology  (IAGP)
abnormal tympanic membrane morphology  (IAGP)
abnormal vomer bone morphology  (IAGP)
absent dorsal mesocardium  (IAGP)
absent ethmoturbinates  (IAGP)
absent external auditory canal  (IAGP)
absent gastric milk in neonates  (IAGP)
absent malleus processus brevis  (IAGP)
absent optic vesicle  (IAGP)
absent turbinates  (IAGP)
absent tympanic membrane  (IAGP)
absent tympanic ring  (IAGP)
cervical vertebral transformation  (IAGP)
cleft palate  (IAGP)
decreased birth body size  (IAGP)
decreased embryo size  (IAGP)
decreased embryonic neuroepithelium thickness  (IAGP)
decreased forebrain size  (IAGP)
decreased hindbrain size  (IAGP)
decreased somite size  (IAGP)
decreased spinal cord size  (IAGP)
decreased tympanic ring size  (IAGP)
embryonic growth arrest  (IAGP)
embryonic growth retardation  (IAGP)
embryonic lethality during organogenesis, complete penetrance  (IAGP)
increased rib number  (IAGP)
mandible hypoplasia  (IAGP)
microcephaly  (IAGP)
neonatal lethality, complete penetrance  (IAGP)
palatine bone hypoplasia  (IAGP)
pallor  (IAGP)
presphenoid bone hypoplasia  (IAGP)
rib fusion  (IAGP)
short mandible  (IAGP)
small alisphenoid bone  (IAGP)
small cribriform plate  (IAGP)
small first pharyngeal arch  (IAGP)
small ischium  (IAGP)
small malleus manubrium  (IAGP)
small malleus processus brevis  (IAGP)
small mandibular coronoid process  (IAGP)
small pharynx  (IAGP)
small pterygoid bone  (IAGP)
small second pharyngeal arch  (IAGP)
small vomer bone  (IAGP)
References

References - curated
# Reference Title Reference Citation
1. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
2. MGDs mouse GO annotations MGD data from the GO Consortium
3. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
4. Mouse MP Annotation Import Pipeline RGD automated import pipeline
5. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:1352187   PMID:7493021   PMID:7555718   PMID:7555726   PMID:7588062   PMID:7618107   PMID:7700351   PMID:7734393   PMID:7768172   PMID:7768185   PMID:7903601   PMID:7916327  
PMID:7924997   PMID:8026341   PMID:8069909   PMID:8101169   PMID:8429908   PMID:8543149   PMID:8543150   PMID:8565828   PMID:8565836   PMID:8597641   PMID:9136933   PMID:9144415  
PMID:9207233   PMID:9226452   PMID:9226455   PMID:9417125   PMID:9431803   PMID:9449664   PMID:9533949   PMID:9566956   PMID:9598346   PMID:9671576   PMID:9770493   PMID:9790191  
PMID:9799237   PMID:9811592   PMID:9811926   PMID:9834185   PMID:9851841   PMID:9887344   PMID:9988215   PMID:10049363   PMID:10330498   PMID:10354604   PMID:10421635   PMID:10431240  
PMID:10433910   PMID:10433912   PMID:10477299   PMID:10498685   PMID:10512191   PMID:10512193   PMID:10529420   PMID:10529425   PMID:10588878   PMID:10601039   PMID:10662781   PMID:10751169  
PMID:10887078   PMID:11291865   PMID:11358868   PMID:11358869   PMID:11418863   PMID:11532921   PMID:11566859   PMID:11566865   PMID:11846474   PMID:11884616   PMID:11934155   PMID:12086465  
PMID:12091315   PMID:12142027   PMID:12351174   PMID:12397106   PMID:12431380   PMID:12447384   PMID:12571099   PMID:12588852   PMID:12842913   PMID:12913075   PMID:14560010   PMID:14610273  
PMID:14623826   PMID:14645126   PMID:14681479   PMID:14761651   PMID:14973294   PMID:15215210   PMID:15306695   PMID:15618518   PMID:15761153   PMID:15857913   PMID:16055724   PMID:16109169  
PMID:16284941   PMID:16291788   PMID:16492970   PMID:16564040   PMID:16678814   PMID:16751105   PMID:16839541   PMID:16887818   PMID:16950123   PMID:17127040   PMID:17142318   PMID:17316383  
PMID:17389379   PMID:17568773   PMID:17586487   PMID:17964566   PMID:18199583   PMID:18287559   PMID:18336814   PMID:18462699   PMID:18572160   PMID:18617531   PMID:18697905   PMID:18729134  
PMID:18799693   PMID:18929642   PMID:18930042   PMID:18974875   PMID:19017795   PMID:19103193   PMID:19591819   PMID:19786569   PMID:19841259   PMID:20016822   PMID:20040491   PMID:20059953  
PMID:20211142   PMID:20333701   PMID:20412781   PMID:20436479   PMID:20450902   PMID:20501333   PMID:20508035   PMID:20549719   PMID:20637190   PMID:21170031   PMID:21237142   PMID:21267068  
PMID:21558373   PMID:21677750   PMID:21731673   PMID:21873635   PMID:21896659   PMID:22075149   PMID:22164283   PMID:22178153   PMID:22186731   PMID:22411303   PMID:22560297   PMID:22902530  
PMID:22912414   PMID:23213408   PMID:23469192   PMID:23487311   PMID:23552073   PMID:23565059   PMID:23863482   PMID:23904126   PMID:24146773   PMID:24290375   PMID:24558432   PMID:24650709  
PMID:24801048   PMID:24952961   PMID:25219788   PMID:25453830   PMID:25511461   PMID:25536399   PMID:25805847   PMID:25896208   PMID:25902370   PMID:25977363   PMID:26534985   PMID:27126000  
PMID:27329940   PMID:27362800   PMID:27705785   PMID:27760115   PMID:27974206   PMID:28467430   PMID:29168693   PMID:29992973   PMID:30071041   PMID:30638444   PMID:30897080   PMID:31118233  
PMID:31308417   PMID:31340933   PMID:32169905   PMID:32439762   PMID:32616504   PMID:33127760   PMID:33230114   PMID:33328221   PMID:33505317   PMID:34672258   PMID:35127681   PMID:37341808  


Genomics

Comparative Map Data
Gsc
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3912104,437,468 - 104,439,495 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl12104,437,468 - 104,439,589 (-)EnsemblGRCm39 Ensembl
GRCm3812104,471,209 - 104,473,236 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl12104,471,209 - 104,473,330 (-)EnsemblGRCm38mm10GRCm38
MGSCv3712105,709,419 - 105,711,446 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3612104,872,259 - 104,874,286 (-)NCBIMGSCv36mm8
Celera12105,702,296 - 105,704,323 (-)NCBICelera
Cytogenetic Map12ENCBI
cM Map1254.32NCBI
GSC
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381494,768,223 - 94,770,113 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1494,768,223 - 94,770,113 (-)EnsemblGRCh38hg38GRCh38
GRCh371495,234,560 - 95,236,450 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361494,304,313 - 94,306,252 (-)NCBINCBI36Build 36hg18NCBI36
Build 341494,304,312 - 94,306,252NCBI
Celera1475,290,663 - 75,292,602 (-)NCBICelera
Cytogenetic Map14q32.13NCBI
HuRef1475,414,787 - 75,416,726 (-)NCBIHuRef
CHM1_11495,172,977 - 95,174,916 (-)NCBICHM1_1
T2T-CHM13v2.01488,998,287 - 89,000,177 (-)NCBIT2T-CHM13v2.0
Gsc
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr86129,152,836 - 129,154,875 (-)NCBIGRCr8
mRatBN7.26123,388,072 - 123,390,111 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl6123,388,072 - 123,390,111 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx6123,518,906 - 123,520,949 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.06123,814,192 - 123,816,235 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.06123,185,732 - 123,187,775 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.06128,147,181 - 128,149,220 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl6128,147,181 - 128,149,220 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.06137,350,766 - 137,352,805 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.46128,526,645 - 128,528,684 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.16128,531,182 - 128,532,078 (-)NCBI
Celera6120,865,501 - 120,867,540 (-)NCBICelera
Cytogenetic Map6q32NCBI
Gsc
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543817,653,271 - 17,656,878 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495543817,653,149 - 17,655,091 (+)NCBIChiLan1.0ChiLan1.0
GSC
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21595,915,666 - 95,917,702 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11495,132,298 - 95,134,186 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01475,390,119 - 75,392,050 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11494,718,269 - 94,720,200 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1494,718,269 - 94,720,404 (-)Ensemblpanpan1.1panPan2
GSC
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1863,684,149 - 63,707,030 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl863,684,137 - 63,707,054 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha863,260,674 - 63,283,571 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0863,951,494 - 63,974,354 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl863,951,503 - 63,974,540 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1863,626,364 - 63,649,232 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0863,678,390 - 63,701,298 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0864,009,439 - 64,032,367 (-)NCBIUU_Cfam_GSD_1.0
Gsc
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864010,745,355 - 10,747,301 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936846286,420 - 288,405 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936846286,429 - 288,405 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GSC
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl7116,098,327 - 116,101,338 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.17116,099,053 - 116,101,153 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.27123,231,551 - 123,233,551 (-)NCBISscrofa10.2Sscrofa10.2susScr3
GSC
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12472,581,639 - 72,585,745 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2472,581,915 - 72,583,423 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605359,787,503 - 59,789,395 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Gsc
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247347,367,277 - 7,368,817 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247347,367,030 - 7,369,081 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Gsc
100 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:262
Count of miRNA genes:202
Interacting mature miRNAs:240
Transcripts:ENSMUST00000021513
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4142002Tbqt3_mtibia bone quality traits 3 (mouse)Not determined1235285496109936243Mouse
27226793Feml10_mfemur length 10, 5 week (mouse)1268346774113363620Mouse
4141738Tgq23_mtriglyceride QTL 23 (mouse)Not determined72112877106112877Mouse
1301926Adip6_madiposity 6 (mouse)Not determined1273887422107887526Mouse
1301689Skull18_mskull morphology 18 (mouse)Not determined1273887422107887526Mouse
13524842Ppiq10a_mprepulse inhibition QTL 10a (mouse)1277512220111512220Mouse
4141610Tailaq1_mtail length adjusted QTL 1 (mouse)Not determined80956708113383533Mouse
4142401Egq10_mearly growth QTL 10 (mouse)Not determined80956708113383533Mouse
4141335W6q10_mweight 6 weeks QTL 10 (mouse)Not determined80956708113383533Mouse
39128213Lwq23_mliver weight QTL 10 (mouse)1280956708113383533Mouse
13524849Ppiq11a_mprepulse inhibition QTL 11a (mouse)1280989143114989143Mouse
25823169Hrsq8_mhost response to SARS QTL 8, log titer (mouse)1281696245108495368Mouse
13524846Ppiq11_mprepulse inhibition QTL 11 (mouse)1282666396116666396Mouse
1301492Dbsty3_mdiabesity 3 (mouse)Not determined1283532075117532224Mouse
1301879Insq10_minsulin QTL 10 (mouse)Not determined1283532075117532224Mouse
1300883Ath21_matherosclerosis 21 (mouse)Not determined1285961579119961683Mouse
10412156Nociq3_mnociceptive sensitivity inflammatory QTL 3 (mouse)Not determined1286396075114831653Mouse
4142007Chlq17_mcirculating hormone level QTL 17 (mouse)Not determined1288052874120092757Mouse
1300545Lifespan3_mlife span 3 (mouse)Not determined1288052874120092757Mouse
1301308Prdt4_mprion disease incubation time 4 (mouse)Not determined1288308354120092757Mouse
5491194Mobq3_mmultigenic obesity QTL 3 (mouse)Not determined1289664071120092757Mouse
1301836Heal5_mwound healing/regeneration 5 (mouse)Not determined1289939031120092757Mouse
1301922Bbaa6_mB.burgdorferi-associated arthritis 6 (mouse)Not determined1290308268120092757Mouse
12910790Pwgrq7_mpre-weaning growth rate QTL 7 (mouse)1290937367108645308Mouse
10402491Dipa4_mdrug induced psychomotor activation 4 (mouse)Not determined1291222515120092757Mouse
10412192Bbaa27_mB.burgdorferi-associated arthritis 27 (mouse)Not determined1291254220107308393Mouse
12910532Nrq10a_mnoise-induced hearing loss resistant QTL 10a (mouse)1292750025120092757Mouse
12910533Nrq10_mnoise-induced hearing loss resistant QTL 10 (mouse)1292750025120092757Mouse
1357463Vtbt14_mvertebral trabecular bone trait 14 (mouse)Not determined1292936097120092757Mouse
1300973Abmm_mantibody mediated myocarditis (mouse)Not determined1293264461120092757Mouse
11039526Ccc1_mcolitis susceptibility in the Collaborative Cross 1 (mouse)1293528334111028223Mouse
1302177Dps2_mdelta power in slow-wave sleep 2 (mouse)Not determined1294146064120092757Mouse
1302138Im6_mimmunoregulatory 6 (mouse)Not determined1296860337120092757Mouse
1301269Sluc12_msusceptibility to lung cancer 12 (mouse)Not determined1296860337120092757Mouse
10412075Nils1_mneointima lesion size 1 (mouse)Not determined12102024665120092757Mouse
25394546Skmw76_mskeletal muscle weight 76, TA (mouse)12102593095106941888Mouse

Markers in Region
Gsc  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3812104,471,486 - 104,472,125UniSTSGRCm38
MGSCv3712105,709,830 - 105,710,329UniSTSGRCm37
Celera12105,702,573 - 105,703,212UniSTS
Cytogenetic Map12EUniSTS
cM Map1252.0UniSTS
cM Map1252.0UniSTS
PMC305791P2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3812104,471,595 - 104,472,117UniSTSGRCm38
MGSCv3712105,709,805 - 105,710,327UniSTSGRCm37
Celera12105,702,682 - 105,703,204UniSTS
Cytogenetic Map12EUniSTS
cM Map1252.0UniSTS
Gsc  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map12EUniSTS
Gsc  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3812104,471,620 - 104,472,119UniSTSGRCm38
MGSCv3712105,709,830 - 105,710,329UniSTSGRCm37
Celera12105,702,707 - 105,703,206UniSTS
Cytogenetic Map12EUniSTS
cM Map1252.0UniSTS
Gsc  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map12EUniSTS


Expression


Sequence


RefSeq Acc Id: ENSMUST00000021513   ⟹   ENSMUSP00000021513
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl12104,437,468 - 104,439,589 (-)Ensembl
GRCm38.p6 Ensembl12104,471,209 - 104,473,330 (-)Ensembl
RefSeq Acc Id: NM_010351   ⟹   NP_034481
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3912104,437,468 - 104,439,495 (-)NCBI
GRCm3812104,471,209 - 104,473,236 (-)ENTREZGENE
MGSCv3712105,709,419 - 105,711,446 (-)RGD
Celera12105,702,296 - 105,704,323 (-)RGD
cM Map12 ENTREZGENE
Sequence:
Protein Sequences
Protein RefSeqs NP_034481 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAA37826 (Get FASTA)   NCBI Sequence Viewer  
  CAA73611 (Get FASTA)   NCBI Sequence Viewer  
  CAA73612 (Get FASTA)   NCBI Sequence Viewer  
  EDL18791 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000021513
  ENSMUSP00000021513.4
GenBank Protein Q02591 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_034481   ⟸   NM_010351
- UniProtKB: Q02591 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSMUSP00000021513   ⟸   ENSMUST00000021513

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q02591-F1-model_v2 AlphaFold Q02591 1-256 view protein structure

Promoters
RGD ID:8679144
Promoter ID:EPDNEW_M17603
Type:multiple initiation site
Name:Gsc_1
Description:Mus musculus goosecoid homeobox , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3812104,473,242 - 104,473,302EPDNEW
RGD ID:6823043
Promoter ID:MM_KWN:12611
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Kidney
Transcripts:NM_010351
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv3612105,711,096 - 105,711,596 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:95841 AgrOrtholog
Ensembl Genes ENSMUSG00000021095 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000021513 ENTREZGENE
  ENSMUST00000021513.6 UniProtKB/Swiss-Prot
Gene3D-CATH Homeodomain-like UniProtKB/Swiss-Prot
InterPro Homeobox-like_sf UniProtKB/Swiss-Prot
  Homeobox_CS UniProtKB/Swiss-Prot
  Homeobox_dom UniProtKB/Swiss-Prot
KEGG Report mmu:14836 UniProtKB/Swiss-Prot
MGD MGI:95841 ENTREZGENE
NCBI Gene 14836 ENTREZGENE
PANTHER HOMEOBOX PROTEIN GOOSECOID UniProtKB/Swiss-Prot
  HOMEOBOX PROTEIN GOOSECOID-RELATED UniProtKB/Swiss-Prot
Pfam Homeodomain UniProtKB/Swiss-Prot
PharmGKB GSC RGD
PhenoGen Gsc PhenoGen
PROSITE HOMEOBOX_1 UniProtKB/Swiss-Prot
  HOMEOBOX_2 UniProtKB/Swiss-Prot
SMART HOX UniProtKB/Swiss-Prot
Superfamily-SCOP SSF46689 UniProtKB/Swiss-Prot
UniProt GSC_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE