Nup58 (nucleoporin 58) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Nup58 (nucleoporin 58) Mus musculus
Analyze
Symbol: Nup58
Name: nucleoporin 58
RGD ID: 1332099
MGI Page MGI
Description: Predicted to enable identical protein binding activity and nuclear localization sequence binding activity. Predicted to be a structural constituent of nuclear pore. Predicted to be involved in nucleocytoplasmic transport and regulation of protein import into nucleus. Predicted to be located in nuclear envelope. Predicted to be part of nuclear pore. Is expressed in testis. Orthologous to human NUP58 (nucleoporin 58).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 1700017F11Rik; 58 kDa nucleoporin; mKIAA0410; nucleoporin like 1; nucleoporin p58/p45; nucleoporin-like protein 1; Nupl1
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391460,442,733 - 60,488,951 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1460,442,731 - 60,488,956 (-)EnsemblGRCm39 Ensembl
GRCm39 Ensembl1460,422,061 - 60,488,880 (-)EnsemblGRCm39 Ensembl
GRCm381460,205,284 - 60,251,479 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1460,205,282 - 60,251,507 (-)EnsemblGRCm38mm10GRCm38
GRCm38.p6 Ensembl1460,184,612 - 60,251,431 (-)EnsemblGRCm38mm10GRCm38
MGSCv371460,838,305 - 60,870,215 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361459,173,578 - 59,205,488 (-)NCBIMGSCv36mm8
Celera1458,009,157 - 58,041,065 (-)NCBICelera
Cytogenetic Map14D1NCBI
cM Map1431.62NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dimethylhydrazine  (EXP)
1-naphthyl isothiocyanate  (ISO)
17beta-estradiol  (ISO)
17beta-hydroxy-5alpha-androstan-3-one  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-dinitrotoluene  (ISO)
2-palmitoylglycerol  (ISO)
3-chloropropane-1,2-diol  (ISO)
3H-1,2-dithiole-3-thione  (ISO)
4,4'-diaminodiphenylmethane  (EXP)
4-hydroxyphenyl retinamide  (EXP)
all-trans-retinoic acid  (ISO)
ammonium chloride  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
benzo[a]pyrene  (EXP,ISO)
benzo[a]pyrene diol epoxide I  (ISO)
bisphenol A  (ISO)
caffeine  (ISO)
cisplatin  (ISO)
clofibric acid  (ISO)
cobalt dichloride  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
crocidolite asbestos  (ISO)
cyclosporin A  (ISO)
dibenz[a,h]anthracene  (ISO)
dibenzo[a,l]pyrene  (ISO)
Dibutyl phosphate  (ISO)
dibutyl phthalate  (ISO)
dorsomorphin  (ISO)
endosulfan  (ISO)
fenvalerate  (ISO)
flavonoids  (ISO)
fluoranthene  (ISO)
genistein  (ISO)
hydrogen peroxide  (ISO)
indometacin  (ISO)
ivermectin  (ISO)
ketamine  (ISO)
methotrexate  (EXP)
methyl methanesulfonate  (ISO)
methylmercury chloride  (ISO)
methylparaben  (ISO)
N(6)-dimethylallyladenine  (ISO)
N-nitrosodiethylamine  (EXP,ISO)
oxaliplatin  (ISO)
paracetamol  (ISO)
phenobarbital  (EXP)
pyrogallol  (EXP)
resveratrol  (ISO)
rotenone  (ISO)
SB 431542  (ISO)
sodium arsenite  (ISO)
sodium dichromate  (ISO)
sunitinib  (ISO)
tert-butyl hydroperoxide  (ISO)
tetrachloromethane  (EXP,ISO)
thioacetamide  (ISO)
titanium dioxide  (ISO)
topotecan  (ISO)
trichostatin A  (ISO)
trimellitic anhydride  (EXP)
troglitazone  (EXP)
valproic acid  (ISO)
vinclozolin  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Regulation of mRNA trafficking by nuclear pore complexes. Bonnet A and Palancade B, Genes (Basel). 2014 Sep 2;5(3):767-91. doi: 10.3390/genes5030767.
2. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
3. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
4. MGDs mouse GO annotations MGD data from the GO Consortium
5. Prediction of the coding sequences of mouse homologues of KIAA gene: III. the complete nucleotide sequences of 500 mouse KIAA-homologous cDNAs identified by screening of terminal sequences of cDNA clones randomly sampled from size-fractionated libraries. Okazaki N, etal., DNA Res 2003 Aug 31;10(4):167-80.
6. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:12477932   PMID:12520002   PMID:12791264   PMID:12904583   PMID:15102471   PMID:15489334   PMID:15782199  
PMID:16141072   PMID:16141073   PMID:18799693   PMID:21267068   PMID:21873635   PMID:28712289   PMID:33202249  


Genomics

Comparative Map Data
Nup58
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391460,442,733 - 60,488,951 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1460,442,731 - 60,488,956 (-)EnsemblGRCm39 Ensembl
GRCm39 Ensembl1460,422,061 - 60,488,880 (-)EnsemblGRCm39 Ensembl
GRCm381460,205,284 - 60,251,479 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1460,205,282 - 60,251,507 (-)EnsemblGRCm38mm10GRCm38
GRCm38.p6 Ensembl1460,184,612 - 60,251,431 (-)EnsemblGRCm38mm10GRCm38
MGSCv371460,838,305 - 60,870,215 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361459,173,578 - 59,205,488 (-)NCBIMGSCv36mm8
Celera1458,009,157 - 58,041,065 (-)NCBICelera
Cytogenetic Map14D1NCBI
cM Map1431.62NCBI
NUP58
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381325,301,625 - 25,349,800 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1325,301,524 - 25,365,390 (+)EnsemblGRCh38hg38GRCh38
GRCh371325,875,763 - 25,923,938 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361324,773,666 - 24,814,561 (+)NCBINCBI36Build 36hg18NCBI36
Build 341324,773,665 - 24,814,561NCBI
Celera136,939,918 - 6,980,809 (+)NCBICelera
Cytogenetic Map13q12.13NCBI
HuRef136,690,062 - 6,730,691 (+)NCBIHuRef
CHM1_11325,843,885 - 25,884,759 (+)NCBICHM1_1
T2T-CHM13v2.01324,511,318 - 24,559,471 (+)NCBIT2T-CHM13v2.0
Nup58
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81538,534,340 - 38,583,959 (-)NCBIGRCr8
mRatBN7.21534,358,170 - 34,407,160 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1534,358,277 - 34,407,060 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1536,229,670 - 36,261,919 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01537,380,301 - 37,412,551 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01535,835,892 - 35,868,141 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01540,496,754 - 40,545,933 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1540,513,342 - 40,545,824 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01544,308,883 - 44,358,084 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41539,317,826 - 39,350,075 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11539,332,153 - 39,365,788 (-)NCBI
Celera1534,076,434 - 34,108,683 (-)NCBICelera
Cytogenetic Map15p12NCBI
Nup58
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554974,762,316 - 4,830,547 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554974,762,316 - 4,830,320 (+)NCBIChiLan1.0ChiLan1.0
NUP58
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21424,896,010 - 24,946,435 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11316,006,071 - 16,056,478 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0136,593,682 - 6,634,397 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11324,944,910 - 24,985,657 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1324,948,081 - 24,992,854 (+)Ensemblpanpan1.1panPan2
NUP58
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12514,106,135 - 14,158,518 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2514,106,187 - 14,158,464 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2514,185,956 - 14,238,412 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02514,236,442 - 14,289,531 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2514,236,494 - 14,289,555 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12514,118,744 - 14,171,646 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02514,120,919 - 14,173,588 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02514,169,367 - 14,222,519 (-)NCBIUU_Cfam_GSD_1.0
Nup58
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945116,363,560 - 116,413,033 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936688985,746 - 1,025,407 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936688986,037 - 1,025,351 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NUP58
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl113,225,268 - 3,259,427 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1113,225,185 - 3,266,163 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2112,493,997 - 2,499,480 (-)NCBISscrofa10.2Sscrofa10.2susScr3
NUP58
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.134,695,071 - 4,743,659 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl34,695,137 - 4,737,195 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605739,706,724 - 39,748,086 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Nup58
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462477613,149,019 - 13,219,370 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462477613,149,918 - 13,219,571 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Nup58
1586 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:244
Count of miRNA genes:198
Interacting mature miRNAs:226
Transcripts:ENSMUST00000041905
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357589Kdnw2_mkidney weight 2 (mouse)Not determined1420887473121269804Mouse
1300625Cosz2_mcocaine seizure 2 (mouse)Not determined143504579768785736Mouse
1301777Bglq15_mbody growth late QTL 15 (mouse)Not determined144296241676962593Mouse
1301489Lbm10_mlean body mass 10 (mouse)Not determined145376129687761529Mouse
1357527Epfpq1_mepididymal fat percentage QTL 1 (mouse)Not determined142106245071885801Mouse
1301424Skull21_mskull morphology 21 (mouse)Not determined144296241676962593Mouse
4142364Pbwg18_mpostnatal body weight growth 18 (mouse)Not determined145228198486282125Mouse
4141400Nilac8_mnicotine induced locomotor activity 8 (mouse)Not determined144306584777066045Mouse
10043889Cia52_mcollagen induced arthritis QTL 52 (mouse)Not determined145608238190082509Mouse
27226774Tibl15_mtibia length 15, 10 week (mouse)143032195787937436Mouse
1301562Hwq1_mheart weight quantitative locus 1 (mouse)Not determined145654674590546941Mouse
1357565wrmod1_mwobbler modifier 1 (mouse)Not determined1458179640101859473Mouse
4142419Tgq26_mtriglyceride QTL 26 (mouse)Not determined4033731974337319Mouse
1300605El5_mepilepsy 5 (mouse)Not determined144945542583455556Mouse
11039527Ccc2_mcolitis susceptibility in the Collaborative Cross 2 (mouse)145991861294138217Mouse
1301091Bbaa21_mB.burgdorferi-associated arthritis 21 (mouse)Not determined144306584777066045Mouse
12880432Fgf23lq3_mFGF23 serum level QTL 3 (mouse)145393744087937440Mouse
1300998Cia17_mcollagen induced arthritis 17 (mouse)Not determined143033525064335381Mouse
10043887Cia50_mcollagen induced arthritis QTL 50 (mouse)Not determined143743018571430320Mouse
1300805Mors3_mmodifier of obesity related sterility 3 (mouse)Not determined144303727077037418Mouse
10043886Cia49_mcollagen induced arthritis QTL 49 (mouse)Not determined142999699463997133Mouse
1300909Ath13_matherosclerosis 13 (mouse)Not determined143033525064335381Mouse
13506929Recrq10_mrecombination rate in male meiosis QTL 10 (mouse)142792195761137449Mouse


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001362439 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001362440 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_170591 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036158853 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC131687 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC166113 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK006062 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK040206 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK078279 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK086412 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK129134 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK133721 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK139895 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK146477 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK163792 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK194134 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK194884 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK199901 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK200201 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC026743 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466535 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CJ220943 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  EH096615 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000041905   ⟹   ENSMUSP00000038716
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1460,455,527 - 60,488,956 (-)Ensembl
GRCm38.p6 Ensembl1460,218,078 - 60,251,507 (-)Ensembl
Ensembl Acc Id: ENSMUST00000223596
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1460,461,437 - 60,469,586 (-)Ensembl
GRCm38.p6 Ensembl1460,223,988 - 60,232,137 (-)Ensembl
Ensembl Acc Id: ENSMUST00000223713
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1460,460,824 - 60,470,426 (-)Ensembl
GRCm38.p6 Ensembl1460,223,375 - 60,232,977 (-)Ensembl
Ensembl Acc Id: ENSMUST00000224575
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1460,476,047 - 60,478,413 (-)Ensembl
GRCm38.p6 Ensembl1460,238,598 - 60,240,964 (-)Ensembl
Ensembl Acc Id: ENSMUST00000225111   ⟹   ENSMUSP00000153625
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1460,457,866 - 60,488,894 (-)Ensembl
GRCm38.p6 Ensembl1460,220,417 - 60,251,445 (-)Ensembl
Ensembl Acc Id: ENSMUST00000225311   ⟹   ENSMUSP00000153117
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1460,442,731 - 60,488,928 (-)Ensembl
GRCm38.p6 Ensembl1460,205,282 - 60,251,479 (-)Ensembl
Ensembl Acc Id: ENSMUST00000225572
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1460,476,475 - 60,488,855 (-)Ensembl
GRCm38.p6 Ensembl1460,239,026 - 60,251,406 (-)Ensembl
Ensembl Acc Id: ENSMUST00000225805   ⟹   ENSMUSP00000153642
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1460,422,061 - 60,488,880 (-)Ensembl
GRCm38.p6 Ensembl1460,184,612 - 60,251,431 (-)Ensembl
RefSeq Acc Id: NM_001362439   ⟹   NP_001349368
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391460,455,520 - 60,488,928 (-)NCBI
GRCm381460,218,071 - 60,251,479 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001362440   ⟹   NP_001349369
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391460,442,733 - 60,488,928 (-)NCBI
GRCm381460,205,284 - 60,251,479 (-)NCBI
Sequence:
RefSeq Acc Id: NM_170591   ⟹   NP_733479
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391460,455,520 - 60,488,928 (-)NCBI
GRCm381460,218,071 - 60,251,479 (-)NCBI
MGSCv371460,838,305 - 60,870,215 (-)RGD
Celera1458,009,157 - 58,041,065 (-)RGD
cM Map14 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_036158853   ⟹   XP_036014746
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391460,448,394 - 60,488,951 (-)NCBI
Sequence:
RefSeq Acc Id: NP_733479   ⟸   NM_170591
- Peptide Label: isoform 1
- UniProtKB: Q8BVG7 (UniProtKB/Swiss-Prot),   Q8BUA7 (UniProtKB/Swiss-Prot),   Q3UJF4 (UniProtKB/Swiss-Prot),   Q8C0W3 (UniProtKB/Swiss-Prot),   Q8R332 (UniProtKB/Swiss-Prot),   Q3UZQ6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001349369   ⟸   NM_001362440
- Peptide Label: isoform 3
- UniProtKB: Q3UZQ6 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001349368   ⟸   NM_001362439
- Peptide Label: isoform 2
- UniProtKB: Q3UZQ6 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSMUSP00000153117   ⟸   ENSMUST00000225311
Ensembl Acc Id: ENSMUSP00000153625   ⟸   ENSMUST00000225111
Ensembl Acc Id: ENSMUSP00000153642   ⟸   ENSMUST00000225805
Ensembl Acc Id: ENSMUSP00000038716   ⟸   ENSMUST00000041905
RefSeq Acc Id: XP_036014746   ⟸   XM_036158853
- Peptide Label: isoform X1
- UniProtKB: Q3UZQ6 (UniProtKB/TrEMBL)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8R332-F1-model_v2 AlphaFold Q8R332 1-587 view protein structure

Promoters
RGD ID:8682612
Promoter ID:EPDNEW_M19336
Type:initiation region
Name:Nupl1_1
Description:Mus musculus nucleoporin like 1 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381460,251,388 - 60,251,448EPDNEW
RGD ID:6825231
Promoter ID:MM_KWN:17109
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000041905,   UC007UEX.1,   UC007UEY.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361460,870,161 - 60,870,817 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1919094 AgrOrtholog
Ensembl Genes ENSMUSG00000063895 Ensembl, UniProtKB/Swiss-Prot
  ENSMUSG00000114797 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000041905 ENTREZGENE
  ENSMUST00000041905.8 UniProtKB/Swiss-Prot
  ENSMUST00000225111 ENTREZGENE
  ENSMUST00000225111.2 UniProtKB/Swiss-Prot
  ENSMUST00000225311 ENTREZGENE
  ENSMUST00000225311.2 UniProtKB/Swiss-Prot
  ENSMUST00000225805.2 UniProtKB/Swiss-Prot
Gene3D-CATH 6.10.140.1350 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Nucleoporin_p58/p45 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:71844 UniProtKB/Swiss-Prot
MGD MGI:1919094 ENTREZGENE
NCBI Gene 71844 ENTREZGENE
PANTHER NUCLEOPORIN P58/P45 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  NUCLEOPORIN P58/P45 NUCLEOPORIN-LIKE PROTEIN 1 UniProtKB/TrEMBL, UniProtKB/Swiss-Prot
Pfam Nucleoporin_FG2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Nup58 PhenoGen
UniProt NUP58_MOUSE UniProtKB/Swiss-Prot
  Q3UJF4 ENTREZGENE
  Q3UZQ6 ENTREZGENE, UniProtKB/TrEMBL
  Q8BUA7 ENTREZGENE
  Q8BVG7 ENTREZGENE
  Q8C0W3 ENTREZGENE
  Q8R332 ENTREZGENE
UniProt Secondary Q3UJF4 UniProtKB/Swiss-Prot
  Q8BUA7 UniProtKB/Swiss-Prot
  Q8BVG7 UniProtKB/Swiss-Prot
  Q8C0W3 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-11-21 Nup58  nucleoporin 58  Nupl1  nucleoporin like 1  Symbol and/or name updated 27372883 PROVISIONAL