Mctp1 (multiple C2 domains, transmembrane 1) - Rat Genome Database

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Gene: Mctp1 (multiple C2 domains, transmembrane 1) Mus musculus
Analyze
Symbol: Mctp1
Name: multiple C2 domains, transmembrane 1
RGD ID: 1331997
MGI Page MGI
Description: Predicted to enable calcium ion binding activity. Predicted to be involved in several processes, including negative regulation of endocytosis; negative regulation of response to oxidative stress; and regulation of neurotransmitter secretion. Predicted to be located in membrane and recycling endosome. Predicted to be active in synaptic vesicle membrane. Is expressed in brain. Orthologous to human MCTP1 (multiple C2 and transmembrane domain containing 1).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 2810465F10Rik; multiple C2 and transmembrane domain-containing protein 1
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391376,530,481 - 77,181,403 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1376,532,259 - 77,179,929 (+)EnsemblGRCm39 Ensembl
GRCm381376,382,362 - 77,033,284 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1376,384,535 - 77,031,810 (+)EnsemblGRCm38mm10GRCm38
MGSCv371376,522,409 - 77,171,071 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361376,850,963 - 77,495,357 (+)NCBIMGSCv36mm8
Celera1378,709,211 - 79,357,429 (+)NCBICelera
Cytogenetic Map13C1NCBI
cM Map1340.98NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(S)-nicotine  (EXP)
1,2-dichloroethane  (EXP)
1,2-dimethylhydrazine  (EXP)
17beta-estradiol  (ISO)
2,2',4,4',5,5'-hexachlorobiphenyl  (EXP)
2,2',5,5'-tetrachlorobiphenyl  (EXP,ISO)
2,3,7,8-tetrachlorodibenzodioxine  (ISO)
2-palmitoylglycerol  (ISO)
3,3',5,5'-tetrabromobisphenol A  (EXP)
3,4-dichloroaniline  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4,4'-sulfonyldiphenol  (ISO)
aflatoxin B1  (ISO)
Aflatoxin B2 alpha  (ISO)
all-trans-retinoic acid  (ISO)
antirheumatic drug  (ISO)
aristolochic acid A  (ISO)
arsenite(3-)  (ISO)
arsenous acid  (ISO)
benzo[a]pyrene  (ISO)
beta-lapachone  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (ISO)
butanal  (ISO)
cadmium dichloride  (ISO)
carbamazepine  (ISO)
carbon nanotube  (EXP)
chloroprene  (EXP)
chlorpyrifos  (EXP)
cisplatin  (ISO)
coumarin  (ISO)
crocidolite asbestos  (ISO)
dexamethasone  (ISO)
diarsenic trioxide  (ISO)
Dibutyl phosphate  (ISO)
diclofenac  (ISO)
diuron  (ISO)
dorsomorphin  (ISO)
ethanol  (EXP)
ethyl methanesulfonate  (ISO)
ethylparaben  (ISO)
folic acid  (EXP)
formaldehyde  (ISO)
FR900359  (ISO)
gentamycin  (ISO)
glyphosate  (ISO)
hydroquinone  (ISO)
indometacin  (ISO)
iron atom  (ISO)
iron(0)  (ISO)
maneb  (EXP)
mercury dibromide  (ISO)
methyl methanesulfonate  (ISO)
methylmercury chloride  (ISO)
morphine  (EXP)
N,N-diethyl-m-toluamide  (ISO)
N-acetyl-1,4-benzoquinone imine  (ISO)
nicotine  (EXP)
nitrates  (EXP)
O-methyleugenol  (ISO)
ozone  (ISO)
p-chloromercuribenzoic acid  (ISO)
paraquat  (EXP)
PCB138  (EXP)
pentanal  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
permethrin  (ISO)
phenylmercury acetate  (ISO)
pirinixic acid  (EXP)
propanal  (ISO)
raloxifene  (ISO)
SB 431542  (ISO)
silicon dioxide  (ISO)
sodium arsenite  (ISO)
sodium dodecyl sulfate  (ISO)
sotorasib  (ISO)
sulforaphane  (ISO)
temozolomide  (ISO)
testosterone  (ISO)
titanium dioxide  (EXP)
trametinib  (ISO)
trichloroethene  (ISO)
trichostatin A  (ISO)
urethane  (ISO)
valproic acid  (ISO)
vinclozolin  (ISO)
vorinostat  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
3. MGDs mouse GO annotations MGD data from the GO Consortium
4. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
5. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
7. Database resources of the National Center for Biotechnology Information. Wheeler DL, etal., Nucleic Acids Res 2001 Jan 1;29(1):11-6.
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:16141072   PMID:16141073   PMID:16959763   PMID:21267068   PMID:21873635   PMID:26190982   PMID:30217595   PMID:38355793  


Genomics

Comparative Map Data
Mctp1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391376,530,481 - 77,181,403 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1376,532,259 - 77,179,929 (+)EnsemblGRCm39 Ensembl
GRCm381376,382,362 - 77,033,284 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1376,384,535 - 77,031,810 (+)EnsemblGRCm38mm10GRCm38
MGSCv371376,522,409 - 77,171,071 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361376,850,963 - 77,495,357 (+)NCBIMGSCv36mm8
Celera1378,709,211 - 79,357,429 (+)NCBICelera
Cytogenetic Map13C1NCBI
cM Map1340.98NCBI
MCTP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38594,703,690 - 95,285,094 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl594,703,690 - 95,285,094 (-)EnsemblGRCh38hg38GRCh38
GRCh37594,039,395 - 94,620,798 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36594,068,957 - 94,646,035 (-)NCBINCBI36Build 36hg18NCBI36
Celera589,904,181 - 90,498,783 (-)NCBICelera
Cytogenetic Map5q15NCBI
HuRef589,215,571 - 89,810,232 (-)NCBIHuRef
CHM1_1593,474,921 - 94,052,972 (-)NCBICHM1_1
T2T-CHM13v2.0595,188,075 - 95,786,099 (-)NCBIT2T-CHM13v2.0
Mctp1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr827,798,968 - 8,493,596 (+)NCBIGRCr8
mRatBN7.226,071,408 - 6,761,833 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl26,065,808 - 6,761,833 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx213,149,950 - 13,873,885 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0211,249,210 - 11,973,165 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.025,914,158 - 6,608,224 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.023,400,883 - 4,089,949 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl23,400,977 - 4,088,989 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.023,398,033 - 4,086,933 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.423,652,722 - 4,354,754 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.123,941,173 - 4,377,606 (+)NCBI
Celera22,535,961 - 3,220,251 (+)NCBICelera
Cytogenetic Map2q11NCBI
Mctp1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541817,229,498 - 17,745,010 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541817,229,498 - 17,746,936 (+)NCBIChiLan1.0ChiLan1.0
MCTP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2420,100,647 - 20,697,607 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1518,254,259 - 18,851,219 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0520,071,072 - 20,669,826 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1520,215,984 - 20,808,014 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl520,215,917 - 20,808,014 (+)Ensemblpanpan1.1panPan2
MCTP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1314,255,685 - 14,782,798 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl314,358,134 - 14,780,801 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha315,594,036 - 16,121,093 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0314,133,526 - 14,662,420 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl314,133,527 - 14,682,475 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1314,098,067 - 14,625,300 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0314,095,557 - 14,623,822 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0314,295,164 - 14,827,487 (+)NCBIUU_Cfam_GSD_1.0
Mctp1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213169,864,546 - 170,367,862 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365238,050,006 - 8,553,432 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365238,050,001 - 8,553,427 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MCTP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl2101,384,910 - 101,920,111 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.12101,384,904 - 101,920,152 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.22104,928,439 - 105,217,494 (-)NCBISscrofa10.2Sscrofa10.2susScr3
MCTP1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1488,581,761 - 89,174,995 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl488,585,446 - 88,967,701 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604937,226,961 - 37,820,001 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Mctp1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474313,405,481 - 13,919,373 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474313,401,767 - 13,919,388 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Mctp1
21095 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1347
Count of miRNA genes:703
Interacting mature miRNAs:863
Transcripts:ENSMUST00000109583, ENSMUST00000109589, ENSMUST00000122843, ENSMUST00000125209, ENSMUST00000126960, ENSMUST00000137052, ENSMUST00000149028, ENSMUST00000155275
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4142331Bxs6_mBXSB/MpJ autoimmune nephritis 6 (mouse)Not determined4521044283744746Mouse
1301593Heal8_mwound healing/regeneration 8 (mouse)Not determined1368053999102054119Mouse
1300573Elsgp2_melevated serum gp70 2 (mouse)Not determined135061682884617027Mouse
10412109Bxs7_mBXSB/MpJ autoimmune nephritis 7 (mouse)Not determined134521044283744746Mouse
10412235Scgq5_mspontaneous crescentic glomerulonephritis QTL 5 (mouse)Not determined133606090896239162Mouse
4142314Tailaq3_mtail length adjusted QTL 3 (mouse)Not determined55720354112431103Mouse
1558850Sgp3_mserum gp70 production 3 (mouse)Not determined135647045676971314Mouse
1301445Listr2_mlisteriosis resistance 2 (mouse)Not determined1366744601100744746Mouse
4141992W6q16_mweight 6 weeks QTL 16 (mouse)Not determined55720354112431103Mouse
4142372Moo2_mmodifier of Odc2 (mouse)Not determinedX5031841184318559Mouse
10412163Wra1_mwheel running activity 1 (mouse)Not determined135913260093132738Mouse
4142241Tailq3_mtail length QTL 3 (mouse)Not determined55720354112431103Mouse
1300941Skl6_mskeletal size (tail length) 6 (mouse)Not determined136425082198250945Mouse
14747007Mancz11_mmandible centroid size 11 (mouse)1370111284104111284Mouse
4140959W10q17_mweight 10 weeks QTL 17 (mouse)Not determined55720354112431103Mouse
1357553Cia28_mcollagen induced arthritis 28 (mouse)Not determined135662924996239162Mouse
1302073Pgct1_mprimordial germ cell tumor locus 1 (mouse)Not determined135382078387820897Mouse
4141266Mol3_mmodifier of LPS-response 3 (mouse)Not determined76132600112431103Mouse
1301949Skull20_mskull morphology 20 (mouse)Not determined136425082198250945Mouse
1357563Bmch6_mbone mechanical trait 6 (mouse)Not determined135538498089385140Mouse
10402414Sgp5_mserum gp70 production 5 (mouse)Not determined1356470456105422186Mouse
1301666Eae13_msusceptibility to experimental allergic encephalomyelitis 13 (mouse)Not determined135031841184318559Mouse
14696726Kidrq3_mkidney weight, right QTL 3 (mouse)1368217066102217066Mouse
4142147Mvwf4_mmodifier of von Willebrand factor 4 (mouse)Not determined20477612112898424Mouse
14746975Manh74_mmandible shape 74 (mouse)135247726986477269Mouse

Markers in Region
RH127036  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381376,935,638 - 76,935,883UniSTSGRCm38
MGSCv371377,074,899 - 77,075,144UniSTSGRCm37
Celera1379,253,306 - 79,253,551UniSTS
Cytogenetic Map7A2UniSTS
Cytogenetic Map13C1UniSTS
32.MMHAP83FRC11.seq  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381376,828,335 - 76,828,523UniSTSGRCm38
MGSCv371376,967,596 - 76,967,784UniSTSGRCm37
Celera1379,143,331 - 79,143,519UniSTS
Cytogenetic Map13C1UniSTS
Whitehead_YAC13 UniSTS
MHAa87e9.seq  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381376,916,392 - 76,916,548UniSTSGRCm38
MGSCv371377,055,653 - 77,055,809UniSTSGRCm37
Celera1379,234,121 - 79,234,283UniSTS
Cytogenetic Map13C1UniSTS
Whitehead_YAC13 UniSTS
MHAa88g1.seq  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381377,010,226 - 77,010,393UniSTSGRCm38
MGSCv371377,149,487 - 77,149,654UniSTSGRCm37
Celera1379,329,752 - 79,329,919UniSTS
Cytogenetic Map13C1UniSTS
Whitehead_YAC13 UniSTS
D13Mit97  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381376,823,046 - 76,823,195UniSTSGRCm38
MGSCv371376,962,307 - 76,962,456UniSTSGRCm37
Celera1379,138,045 - 79,138,198UniSTS
Cytogenetic Map13C1UniSTS
cM Map1340.0UniSTS
Whitehead Genetic1325.1UniSTS
Whitehead_YAC13 UniSTS
D13Mit99  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381376,799,396 - 76,799,600UniSTSGRCm38
MGSCv371376,938,657 - 76,938,861UniSTSGRCm37
Celera1379,114,548 - 79,114,722UniSTS
Cytogenetic Map13C1UniSTS
cM Map1340.0UniSTS
Whitehead Genetic1325.1UniSTS
Whitehead/MRC_RH13674.37UniSTS
Whitehead_YAC13 UniSTS


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001377108 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_030174 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006517462 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006517463 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006517464 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006517466 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006517467 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006517468 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006517469 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006517470 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006517471 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006517472 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017315643 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030247469 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036158226 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036158227 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC112671 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC124362 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC140345 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC154788 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC161266 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK013379 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK047562 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK054478 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK144765 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK154322 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BB197311 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CD352795 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466563 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CT009761 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000109583   ⟹   ENSMUSP00000105212
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1376,727,793 - 77,178,070 (+)Ensembl
GRCm38.p6 Ensembl1376,579,674 - 77,029,951 (+)Ensembl
Ensembl Acc Id: ENSMUST00000109589   ⟹   ENSMUSP00000105218
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1376,727,847 - 76,881,002 (+)Ensembl
GRCm38.p6 Ensembl1376,579,728 - 76,732,883 (+)Ensembl
Ensembl Acc Id: ENSMUST00000122843
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1376,973,565 - 77,178,864 (+)Ensembl
GRCm38.p6 Ensembl1376,825,446 - 77,030,745 (+)Ensembl
Ensembl Acc Id: ENSMUST00000125209   ⟹   ENSMUSP00000118958
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1376,532,259 - 77,179,929 (+)Ensembl
GRCm38.p6 Ensembl1376,384,535 - 77,031,810 (+)Ensembl
Ensembl Acc Id: ENSMUST00000126960   ⟹   ENSMUSP00000120673
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1376,727,793 - 76,911,392 (+)Ensembl
GRCm38.p6 Ensembl1376,579,674 - 76,763,273 (+)Ensembl
Ensembl Acc Id: ENSMUST00000137052
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1376,871,806 - 76,976,959 (+)Ensembl
GRCm38.p6 Ensembl1376,723,687 - 76,828,840 (+)Ensembl
Ensembl Acc Id: ENSMUST00000149028
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1376,973,602 - 76,976,402 (+)Ensembl
GRCm38.p6 Ensembl1376,825,483 - 76,828,283 (+)Ensembl
Ensembl Acc Id: ENSMUST00000155275
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1376,973,326 - 76,976,195 (+)Ensembl
GRCm38.p6 Ensembl1376,825,207 - 76,828,076 (+)Ensembl
RefSeq Acc Id: NM_001377108   ⟹   NP_001364037
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391376,727,716 - 77,181,403 (+)NCBI
GRCm381376,579,597 - 77,033,284 (+)NCBI
Sequence:
RefSeq Acc Id: NM_030174   ⟹   NP_084450
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391376,532,258 - 77,181,403 (+)NCBI
GRCm381376,384,139 - 77,033,284 (+)NCBI
MGSCv371376,522,409 - 77,171,071 (+)RGD
Celera1378,709,211 - 79,357,429 (+)RGD
cM Map13 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006517462   ⟹   XP_006517525
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391376,530,481 - 77,181,396 (+)NCBI
GRCm381376,382,362 - 77,033,277 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006517463   ⟹   XP_006517526
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391376,530,481 - 77,181,396 (+)NCBI
GRCm381376,382,362 - 77,033,277 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006517464   ⟹   XP_006517527
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391376,530,481 - 77,181,396 (+)NCBI
GRCm381376,382,362 - 77,033,277 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006517466   ⟹   XP_006517529
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391376,530,481 - 77,181,396 (+)NCBI
GRCm381376,382,362 - 77,033,277 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006517467   ⟹   XP_006517530
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391376,530,481 - 77,181,396 (+)NCBI
GRCm381376,382,362 - 77,033,277 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006517468   ⟹   XP_006517531
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391376,724,831 - 77,181,396 (+)NCBI
GRCm381376,579,311 - 77,033,277 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006517469   ⟹   XP_006517532
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391376,724,833 - 77,181,396 (+)NCBI
GRCm381376,579,313 - 77,033,277 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006517470   ⟹   XP_006517533
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391376,780,511 - 77,181,396 (+)NCBI
GRCm381376,632,392 - 77,033,277 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006517471   ⟹   XP_006517534
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391376,724,835 - 77,181,396 (+)NCBI
GRCm381376,579,315 - 77,033,277 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006517472   ⟹   XP_006517535
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391376,530,481 - 76,969,596 (+)NCBI
GRCm381376,382,362 - 76,821,477 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017315643   ⟹   XP_017171132
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391376,530,481 - 77,181,396 (+)NCBI
GRCm381376,382,362 - 77,033,277 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030247469   ⟹   XP_030103329
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391376,724,835 - 77,181,396 (+)NCBI
GRCm381376,579,315 - 77,033,277 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036158226   ⟹   XP_036014119
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391376,530,481 - 77,181,396 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036158227   ⟹   XP_036014120
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391376,530,481 - 77,181,396 (+)NCBI
Sequence:
RefSeq Acc Id: NP_084450   ⟸   NM_030174
- Peptide Label: isoform 1
- UniProtKB: E9PV86 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006517525   ⟸   XM_006517462
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006517529   ⟸   XM_006517466
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_006517527   ⟸   XM_006517464
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_006517526   ⟸   XM_006517463
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_006517530   ⟸   XM_006517467
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_006517535   ⟸   XM_006517472
- Peptide Label: isoform X14
- Sequence:
RefSeq Acc Id: XP_006517531   ⟸   XM_006517468
- Peptide Label: isoform X9
- UniProtKB: E9PW38 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006517532   ⟸   XM_006517469
- Peptide Label: isoform X10
- UniProtKB: E9PW38 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006517534   ⟸   XM_006517471
- Peptide Label: isoform X13
- UniProtKB: E9PW38 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006517533   ⟸   XM_006517470
- Peptide Label: isoform X12
- UniProtKB: E9PW38 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017171132   ⟸   XM_017315643
- Peptide Label: isoform X8
- Sequence:
RefSeq Acc Id: XP_030103329   ⟸   XM_030247469
- Peptide Label: isoform X11
- UniProtKB: E9PW38 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001364037   ⟸   NM_001377108
- Peptide Label: isoform 2
- UniProtKB: E9PW38 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSMUSP00000118958   ⟸   ENSMUST00000125209
Ensembl Acc Id: ENSMUSP00000120673   ⟸   ENSMUST00000126960
Ensembl Acc Id: ENSMUSP00000105212   ⟸   ENSMUST00000109583
Ensembl Acc Id: ENSMUSP00000105218   ⟸   ENSMUST00000109589
RefSeq Acc Id: XP_036014119   ⟸   XM_036158226
- Peptide Label: isoform X6
RefSeq Acc Id: XP_036014120   ⟸   XM_036158227
- Peptide Label: isoform X7
Protein Domains
C2

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-E9PV86-F1-model_v2 AlphaFold E9PV86 1-951 view protein structure

Promoters
RGD ID:8680904
Promoter ID:EPDNEW_M18466
Type:multiple initiation site
Name:Mctp1_1
Description:Mus musculus multiple C2 domains, transmembrane 1 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M18467  EPDNEW_M18468  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381376,579,597 - 76,579,657EPDNEW
RGD ID:8680872
Promoter ID:EPDNEW_M18467
Type:single initiation site
Name:Mctp1_2
Description:Mus musculus multiple C2 domains, transmembrane 1 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M18468  EPDNEW_M18466  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381376,623,851 - 76,623,911EPDNEW
RGD ID:6824136
Promoter ID:MM_KWN:14741
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Lung,   Spleen
Transcripts:ENSMUST00000109583,   OTTMUST00000063667,   OTTMUST00000063668
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361376,718,661 - 76,719,161 (+)MPROMDB
RGD ID:8680874
Promoter ID:EPDNEW_M18468
Type:initiation region
Name:Mctp1_3
Description:Mus musculus multiple C2 domains, transmembrane 1 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M18467  EPDNEW_M18466  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381376,825,477 - 76,825,537EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1926021 AgrOrtholog
Ensembl Genes ENSMUSG00000021596 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000109583 ENTREZGENE
  ENSMUST00000109583.9 UniProtKB/TrEMBL
  ENSMUST00000109589.3 UniProtKB/TrEMBL
  ENSMUST00000125209 ENTREZGENE
  ENSMUST00000125209.9 UniProtKB/Swiss-Prot
  ENSMUST00000126960.8 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.150 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro C2_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  C2_domain_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  MCTP_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:1926021 ENTREZGENE
NCBI Gene 78771 ENTREZGENE
PANTHER C2 DOMAIN-CONTAINING PROTEIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  DYSFERLIN-RELATED UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam PF00168 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PRT_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Mctp1 PhenoGen
PRINTS C2DOMAIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE PS50004 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART SM00239 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF49562 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt E9PV86 ENTREZGENE
  E9PW38 ENTREZGENE, UniProtKB/TrEMBL
  E9PYR7_MOUSE UniProtKB/TrEMBL
  E9Q1Y4_MOUSE UniProtKB/TrEMBL
  MCTP1_MOUSE UniProtKB/Swiss-Prot
  Q3U4B9_MOUSE UniProtKB/TrEMBL
  Q3UMP3_MOUSE UniProtKB/TrEMBL
  Q8C6J4_MOUSE UniProtKB/TrEMBL
  Q8C8C0_MOUSE UniProtKB/TrEMBL