Nepro (nucleolus and neural progenitor protein) - Rat Genome Database

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Gene: Nepro (nucleolus and neural progenitor protein) Mus musculus
Analyze
Symbol: Nepro
Name: nucleolus and neural progenitor protein
RGD ID: 1331857
MGI Page MGI
Description: Acts upstream of or within negative regulation of neuron differentiation and positive regulation of Notch signaling pathway. Located in nucleolus. Is expressed in several structures, including adipose tissue; alimentary system; genitourinary system; integumental system; and nervous system. Human ortholog(s) of this gene implicated in anauxetic dysplasia 3. Orthologous to human NEPRO (nucleolus and neural progenitor protein).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: hypothetical protein LOC212547; MGC27931; uncharacterized protein C3orf17 homolog; uncharacterized protein LOC212547
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391644,544,645 - 44,559,994 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1644,544,664 - 44,557,647 (+)EnsemblGRCm39 Ensembl
GRCm381644,724,301 - 44,738,856 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1644,724,301 - 44,737,284 (+)EnsemblGRCm38mm10GRCm38
MGSCv371644,724,412 - 44,737,245 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361644,643,631 - 44,656,464 (+)NCBIMGSCv36mm8
Celera1645,084,903 - 45,097,735 (+)NCBICelera
Cytogenetic Map16B4NCBI
cM Map1629.04NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleolus  (IDA)
nucleus  (IBA,IDA)

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
2. Mouse MP Annotation Import Pipeline RGD automated import pipeline
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11125038   PMID:11217851   PMID:12466851   PMID:12477932   PMID:12520002   PMID:12904583   PMID:14610273   PMID:16141072   PMID:16141073  
PMID:18799693   PMID:19906856   PMID:21267068   PMID:21677750   PMID:21873635   PMID:23160044   PMID:24194600   PMID:26178919   PMID:27626380   PMID:34321999   PMID:38355793  


Genomics

Comparative Map Data
Nepro
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391644,544,645 - 44,559,994 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1644,544,664 - 44,557,647 (+)EnsemblGRCm39 Ensembl
GRCm381644,724,301 - 44,738,856 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1644,724,301 - 44,737,284 (+)EnsemblGRCm38mm10GRCm38
MGSCv371644,724,412 - 44,737,245 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361644,643,631 - 44,656,464 (+)NCBIMGSCv36mm8
Celera1645,084,903 - 45,097,735 (+)NCBICelera
Cytogenetic Map16B4NCBI
cM Map1629.04NCBI
NEPRO
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383113,002,444 - 113,019,671 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3113,002,444 - 113,019,861 (-)EnsemblGRCh38hg38GRCh38
GRCh373112,721,291 - 112,738,518 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 363114,203,981 - 114,221,245 (-)NCBINCBI36Build 36hg18NCBI36
Build 343114,206,457 - 114,221,203NCBI
Celera3111,129,629 - 111,146,889 (-)NCBICelera
Cytogenetic Map3q13.2NCBI
HuRef3110,104,836 - 110,122,102 (-)NCBIHuRef
CHM1_13112,684,833 - 112,702,093 (-)NCBICHM1_1
T2T-CHM13v2.03115,723,401 - 115,740,627 (-)NCBIT2T-CHM13v2.0
Nepro
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81169,464,263 - 69,476,429 (-)NCBIGRCr8
mRatBN7.21155,958,265 - 55,970,432 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1155,958,267 - 55,970,432 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1164,771,935 - 64,784,100 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01157,433,786 - 57,445,951 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01156,504,113 - 56,516,278 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01160,919,477 - 60,931,642 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1160,919,453 - 60,931,794 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01165,032,119 - 65,044,284 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41157,497,040 - 57,509,205 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11157,554,630 - 57,566,794 (-)NCBI
Celera1155,521,866 - 55,534,031 (-)NCBICelera
Cytogenetic Map11q21NCBI
Nepro
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542713,233,970 - 13,248,013 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542713,232,375 - 13,247,164 (-)NCBIChiLan1.0ChiLan1.0
NEPRO
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22111,005,032 - 111,022,295 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13111,009,807 - 111,027,183 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03110,152,415 - 110,169,736 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13117,076,649 - 117,094,041 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3117,076,649 - 117,094,041 (-)Ensemblpanpan1.1panPan2
NEPRO
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13317,392,962 - 17,406,385 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3317,393,154 - 17,406,338 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3317,495,837 - 17,509,832 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03317,636,958 - 17,650,956 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3317,636,674 - 17,650,864 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13317,441,302 - 17,455,110 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03317,488,757 - 17,502,761 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03318,038,410 - 18,052,222 (-)NCBIUU_Cfam_GSD_1.0
Nepro
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405602136,866,719 - 136,881,289 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936536638,961 - 655,159 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936536641,085 - 655,177 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NEPRO
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13146,902,041 - 146,915,162 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.113146,902,010 - 146,914,755 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.213156,503,350 - 156,514,597 (+)NCBISscrofa10.2Sscrofa10.2susScr3
NEPRO
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12267,817,433 - 67,833,609 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2267,817,386 - 67,832,257 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604198,645,396 - 98,663,067 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Nepro
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473135,514,769 - 35,528,659 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473135,514,696 - 35,528,822 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Nepro
461 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1424
Count of miRNA genes:639
Interacting mature miRNAs:836
Transcripts:ENSMUST00000048788, ENSMUST00000123673, ENSMUST00000130805, ENSMUST00000132610, ENSMUST00000147804
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
11059560Lmr12b_mleishmaniasis resistance 12b (mouse)162879281362792952Mouse
1301138Pcd4ts3_mp-glycoprotein positive CD4 T cell subset 3 (mouse)Not determined164059392374594076Mouse
26884376Skwq4_mskull length QTL 4, 5 week (mouse)16841786490896888Mouse
1301841Lrnx9_mlearning-contextual 9 (mouse)Not determined161222536046225471Mouse
1302096Aod1a_mautoimmune ovarian dysgenesis 1a (mouse)Not determined163544664392573008Mouse
4141179Ipng3_mimprinted postnatal growth 3 (mouse)Not determined2277525257594076Mouse
1301719Remslp3_mrapid eye movement sleep 3 (mouse)Not determined164438335078383506Mouse
1357778Diobq_mdiet-induced obesity QTL (mouse)Not determined164219781782331174Mouse
26884432Zlq7_mzygomatic length QTL 7, 10 week (mouse)16381786464620363Mouse
11049571Lmr12c_mleishmaniasis resistance 12c (mouse)162879281362792952Mouse
1301086Lprm5_mlymphoproliferation modifier 5 (mouse)Not determined161184882445848923Mouse
27226768Tibl9_mtibia length 9, 5 week (mouse)16331786451420363Mouse
11059559Lmr12a_mleishmaniasis resistance 12a (mouse)162879281362792952Mouse
4142187Arrd3_mage-related retinal degeneration 3 (mouse)Not determined3252290965466552Mouse
11522747Eae41_mexperimental allergic encephalomyelitis susceptibility 41 (mouse)164039913478015472Mouse
1357763Lp1_mlymphocyte proliferation 1 (mouse)Not determined16654297965466552Mouse
1357517Bwtn1_mbody weight at necropsy 1 (mouse)Not determined162001932985600826Mouse
26884416Bzwq5_mbi-zygomatic width QTL 5, 5 week (mouse)163732036284696888Mouse
1301070Cypr1_mcytokine production 1 (mouse)Not determined163231279566312933Mouse
4141985Nhil2_mnon-heme iron levels 2 (mouse)Not determined164414181044806480Mouse
4142112Skts-fp3_mskin tumor susceptibility in FVB and PWK 3 (mouse)Not determined164005388172924385Mouse
1300915Lmr12_mleishmaniasis resistance 12 (mouse)Not determined162879281362792952Mouse
4142236Pstc4_mperiosteal circumference 4 (mouse)Not determined161552290949523112Mouse
4141212Imraq3_mimmune response to AAV2 QTL 3 (mouse)Not determined164438335078383506Mouse
1300534Bmd15_mbone mineral density 15 (mouse)Not determined162193838355938574Mouse
10045614Rapop6_mradiation-induced apoptosis 6 (mouse)Not determined161480292148803032Mouse
10412263Gvhd6_mgraft-versus host disease 6 (mouse)Not determined163606085745511148Mouse
27226785Feml12_mfemur length 12, 5 week (mouse)16331786464620363Mouse


Sequence


Ensembl Acc Id: ENSMUST00000048788   ⟹   ENSMUSP00000038779
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1644,544,664 - 44,557,647 (+)Ensembl
GRCm38.p6 Ensembl1644,724,301 - 44,737,284 (+)Ensembl
Ensembl Acc Id: ENSMUST00000123673   ⟹   ENSMUSP00000122861
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1644,544,720 - 44,551,727 (+)Ensembl
GRCm38.p6 Ensembl1644,724,357 - 44,731,364 (+)Ensembl
Ensembl Acc Id: ENSMUST00000130805
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1644,546,530 - 44,554,492 (+)Ensembl
GRCm38.p6 Ensembl1644,726,167 - 44,734,129 (+)Ensembl
Ensembl Acc Id: ENSMUST00000132610   ⟹   ENSMUSP00000116115
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1644,547,482 - 44,555,089 (+)Ensembl
GRCm38.p6 Ensembl1644,727,119 - 44,734,726 (+)Ensembl
Ensembl Acc Id: ENSMUST00000147804   ⟹   ENSMUSP00000122052
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1644,544,720 - 44,556,936 (+)Ensembl
GRCm38.p6 Ensembl1644,724,357 - 44,736,573 (+)Ensembl
RefSeq Acc Id: NM_001416872   ⟹   NP_001403801
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391644,544,645 - 44,559,994 (+)NCBI
RefSeq Acc Id: NM_001416873   ⟹   NP_001403802
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391644,544,645 - 44,559,994 (+)NCBI
RefSeq Acc Id: NM_001416874   ⟹   NP_001403803
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391644,544,645 - 44,559,994 (+)NCBI
RefSeq Acc Id: NM_145972   ⟹   NP_666084
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391644,544,645 - 44,559,994 (+)NCBI
GRCm381644,724,301 - 44,737,284 (+)NCBI
MGSCv371644,724,412 - 44,737,245 (+)RGD
Celera1645,084,905 - 45,097,887 (+)ENTREZGENE
cM Map16 ENTREZGENE
Sequence:
RefSeq Acc Id: NP_666084   ⟸   NM_145972
- Peptide Label: isoform 1
- UniProtKB: Q3TS42 (UniProtKB/TrEMBL),   Q8R2U2 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSMUSP00000122052   ⟸   ENSMUST00000147804
Ensembl Acc Id: ENSMUSP00000038779   ⟸   ENSMUST00000048788
Ensembl Acc Id: ENSMUSP00000116115   ⟸   ENSMUST00000132610
Ensembl Acc Id: ENSMUSP00000122861   ⟸   ENSMUST00000123673
RefSeq Acc Id: NP_001403803   ⟸   NM_001416874
- Peptide Label: isoform 3
- UniProtKB: Q3TS42 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001403801   ⟸   NM_001416872
- Peptide Label: isoform 2
- UniProtKB: Q3TS42 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001403802   ⟸   NM_001416873
- Peptide Label: isoform 3
- UniProtKB: Q3TS42 (UniProtKB/TrEMBL)
Protein Domains
Nucleolus and neural progenitor protein-like N-

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8R2U2-F1-model_v2 AlphaFold Q8R2U2 1-564 view protein structure

Promoters
RGD ID:6826844
Promoter ID:MM_KWN:21086
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000048788,   OTTMUST00000070335,   OTTMUST00000070936
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361644,724,221 - 44,724,832 (+)MPROMDB
RGD ID:8686260
Promoter ID:EPDNEW_M21161
Type:multiple initiation site
Name:Nepro_1
Description:Mus musculus nucleolus and neural progenitor protein , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381644,724,282 - 44,724,342EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2384836 AgrOrtholog
Ensembl Genes ENSMUSG00000036208 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000048788 ENTREZGENE
  ENSMUST00000048788.14 UniProtKB/Swiss-Prot
  ENSMUST00000123673.8 UniProtKB/TrEMBL
  ENSMUST00000132610.2 UniProtKB/TrEMBL
  ENSMUST00000147804.8 UniProtKB/TrEMBL
InterPro DUF4477 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Nepro-associated UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:212547 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:2384836 ENTREZGENE
NCBI Gene 212547 ENTREZGENE
PANTHER NUCLEOLUS AND NEURAL PROGENITOR PROTEIN UniProtKB/Swiss-Prot
  NUCLEOLUS AND NEURAL PROGENITOR PROTEIN UniProtKB/Swiss-Prot
  NUCLEOLUS AND NEURAL PROGENITOR PROTEIN UniProtKB/TrEMBL
  NUCLEOLUS AND NEURAL PROGENITOR PROTEIN UniProtKB/TrEMBL
Pfam DUF4477 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Nepro PhenoGen
UniProt D6RFS8_MOUSE UniProtKB/TrEMBL
  F6RAK6_MOUSE UniProtKB/TrEMBL
  NEPRO_MOUSE UniProtKB/Swiss-Prot
  Q3TS42 ENTREZGENE, UniProtKB/TrEMBL
  Q3UVH9_MOUSE UniProtKB/TrEMBL
  Q8R2U2 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-10-27 Nepro  nucleolus and neural progenitor protein  BC027231  cDNA sequence BC027231  Symbol and/or name change 5135510 APPROVED