Uqcrb (ubiquinol-cytochrome c reductase binding protein) - Rat Genome Database

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Gene: Uqcrb (ubiquinol-cytochrome c reductase binding protein) Mus musculus
Analyze
Symbol: Uqcrb
Name: ubiquinol-cytochrome c reductase binding protein
RGD ID: 1323704
MGI Page MGI
Description: Predicted to be involved in mitochondrial electron transport, ubiquinol to cytochrome c. Located in mitochondrion. Part of respiratory chain complex III. Is active in mitochondrial inner membrane. Is expressed in several structures, including alimentary system; cranium; heart; integumental system; and nervous system. Human ortholog(s) of this gene implicated in inherited metabolic disorder and mitochondrial complex III deficiency nuclear type 3. Orthologous to human UQCRB (ubiquinol-cytochrome c reductase binding protein).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 2210415M14Rik; complex III subunit 7; complex III subunit VII; cytochrome b-c1 complex subunit 7; MGC107639; MGC35665; QP-; QP-C; QPC; ubiquinol-cytochrome c reductase complex 14 kDa protein; UQBC; UQBP; UQPC
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Related Pseudogenes: Gm16089   Gm19326   Gm2962   Gm5457  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391367,048,640 - 67,053,414 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1367,048,681 - 67,053,442 (-)EnsemblGRCm39 Ensembl
GRCm381366,900,576 - 66,905,350 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1366,900,617 - 66,905,378 (-)EnsemblGRCm38mm10GRCm38
MGSCv371367,001,557 - 67,006,286 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361367,336,370 - 67,341,099 (-)NCBIMGSCv36mm8
Celera1370,399,407 - 70,404,153 (+)NCBICelera
Cytogenetic Map13B3NCBI
cM Map1334.54NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-dexrazoxane  (EXP)
(-)-epigallocatechin 3-gallate  (ISO)
1,1-dichloroethene  (EXP)
1,2-dimethylhydrazine  (EXP)
17alpha-ethynylestradiol  (EXP)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,6-dinitrotoluene  (ISO)
4,4'-sulfonyldiphenol  (ISO)
5-fluorouracil  (ISO)
5-Hydroxythalidomide  (EXP,ISO)
antirheumatic drug  (ISO)
arsenite(3-)  (ISO)
astaxanthin  (EXP)
atrazine  (ISO)
benzo[a]pyrene  (ISO)
beta-lapachone  (ISO)
bilirubin IXalpha  (ISO)
bisphenol A  (EXP,ISO)
bisphenol AF  (ISO)
bisphenol F  (ISO)
bortezomib  (ISO)
Brodifacoum  (ISO)
butanal  (ISO)
cadmium dichloride  (ISO)
carbon nanotube  (EXP)
CGP 52608  (ISO)
chromium(6+)  (ISO)
clofibrate  (EXP)
copper atom  (ISO)
copper(0)  (ISO)
corosolic acid  (ISO)
dibenz[a,h]anthracene  (ISO)
dibutyl phthalate  (EXP)
dicrotophos  (ISO)
disodium selenite  (ISO)
disulfiram  (ISO)
doxorubicin  (EXP)
elemental selenium  (ISO)
epoxiconazole  (EXP)
folic acid  (EXP)
hydralazine  (ISO)
isoniazide  (EXP)
ivermectin  (ISO)
lamivudine  (EXP)
lead(0)  (ISO)
lipopolysaccharide  (ISO)
mercury atom  (ISO)
mercury(0)  (ISO)
metformin  (EXP)
mifepristone  (ISO)
N,N-diethyl-m-toluamide  (ISO)
N-nitrosomorpholine  (ISO)
paracetamol  (EXP,ISO)
permethrin  (ISO)
potassium chromate  (ISO)
Pyridostigmine bromide  (ISO)
resveratrol  (EXP)
rotenone  (ISO)
selenium atom  (ISO)
sodium fluoride  (EXP)
streptozocin  (EXP)
tamoxifen  (EXP)
thapsigargin  (ISO)
triphenyl phosphate  (ISO)
tungsten  (EXP)
tunicamycin  (ISO)
valproic acid  (EXP,ISO)
zidovudine  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. A deletion in the human QP-C gene causes a complex III deficiency resulting in hypoglycaemia and lactic acidosis. Haut S, etal., Hum Genet. 2003 Jul;113(2):118-22. Epub 2003 Apr 23.
2. Candidate hippocampal biomarkers of susceptibility and resilience to stress in a rat model of depression. Henningsen K, etal., Mol Cell Proteomics. 2012 Jul;11(7):M111.016428. doi: 10.1074/mcp.M111.016428. Epub 2012 Feb 6.
3. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
4. MGDs mouse GO annotations MGD data from the GO Consortium
5. Integrated analysis of protein composition, tissue diversity, and gene regulation in mouse mitochondria. Mootha VK, etal., Cell 2003 Nov 26;115(5):629-40.
6. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
7. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
8. Mouse MP Annotation Import Pipeline RGD automated import pipeline
9. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
10. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:12466851   PMID:12477932   PMID:12865426   PMID:14610273   PMID:14681479   PMID:15489334   PMID:16120479   PMID:16141072  
PMID:16141073   PMID:16901643   PMID:16916647   PMID:18614015   PMID:18614564   PMID:20145250   PMID:21267068   PMID:21677750   PMID:21873635   PMID:24194600   PMID:27626380   PMID:28844695  
PMID:29199018   PMID:29222160   PMID:34140513   PMID:34616041   PMID:36417873   PMID:38355793   PMID:38459019   PMID:38575788   PMID:39181129  


Genomics

Comparative Map Data
Uqcrb
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391367,048,640 - 67,053,414 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1367,048,681 - 67,053,442 (-)EnsemblGRCm39 Ensembl
GRCm381366,900,576 - 66,905,350 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1366,900,617 - 66,905,378 (-)EnsemblGRCm38mm10GRCm38
MGSCv371367,001,557 - 67,006,286 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361367,336,370 - 67,341,099 (-)NCBIMGSCv36mm8
Celera1370,399,407 - 70,404,153 (+)NCBICelera
Cytogenetic Map13B3NCBI
cM Map1334.54NCBI
UQCRB
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38896,222,947 - 96,235,545 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl896,222,947 - 96,235,546 (-)EnsemblGRCh38hg38GRCh38
GRCh37897,235,175 - 97,247,773 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36897,311,910 - 97,316,987 (-)NCBINCBI36Build 36hg18NCBI36
Build 34897,311,910 - 97,316,987NCBI
Celera893,425,296 - 93,433,854 (-)NCBICelera
Cytogenetic Map8q22.1NCBI
HuRef892,444,462 - 92,453,413 (-)NCBIHuRef
CHM1_1897,279,143 - 97,288,101 (-)NCBICHM1_1
T2T-CHM13v2.0897,348,283 - 97,360,880 (-)NCBIT2T-CHM13v2.0
Uqcrb
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8765,700,016 - 65,705,382 (-)NCBIGRCr8
mRatBN7.2763,814,784 - 63,820,150 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl763,814,797 - 63,820,150 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx765,703,995 - 65,709,361 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0767,906,281 - 67,911,647 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0767,698,929 - 67,704,291 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0771,264,501 - 71,269,869 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl771,264,514 - 71,269,869 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0 Ensembl194,718,402 - 94,718,876 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0771,436,501 - 71,441,869 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4767,958,363 - 67,963,730 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1767,979,647 - 67,984,492 (-)NCBI
Celera760,947,446 - 60,952,812 (-)NCBICelera
Cytogenetic Map7q22NCBI
LOC102014666
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541712,229,317 - 12,232,944 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541712,225,505 - 12,232,944 (-)NCBIChiLan1.0ChiLan1.0
LOC100985683
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v27113,563,347 - 113,568,015 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1889,102,298 - 89,106,936 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0892,856,055 - 92,860,697 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1895,053,173 - 95,058,311 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl895,053,170 - 95,058,311 (-)Ensemblpanpan1.1panPan2
LOC119866751
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ROS_Cfam_1.02940,934,060 - 40,939,720 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.12940,977,344 - 40,982,559 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02940,946,437 - 40,951,665 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02941,409,574 - 41,414,443 (-)NCBIUU_Cfam_GSD_1.0
LOC101976290
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530338,874,448 - 38,883,247 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647046,300,613 - 46,305,016 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647046,300,547 - 46,305,016 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
UQCRB
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl440,403,109 - 40,409,057 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1440,403,272 - 40,409,080 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2443,631,687 - 43,645,603 (-)NCBISscrofa10.2Sscrofa10.2susScr3
LOC103237165
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1891,194,628 - 91,199,264 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl891,194,625 - 91,199,219 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603949,588,303 - 49,596,837 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
LOC101707358
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247633,550,959 - 3,555,346 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247633,550,916 - 3,555,430 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Uqcrb
155 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:123
Count of miRNA genes:121
Interacting mature miRNAs:122
Transcripts:ENSMUST00000021993, ENSMUST00000174606
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300561Heal7_mwound healing/regeneration 7 (mouse)Not determined133614482070144904Mouse
4142331Bxs6_mBXSB/MpJ autoimmune nephritis 6 (mouse)Not determined4521044283744746Mouse
4142009Pregq3_mpregnancy QTL 3 (mouse)Not determined132061551272385189Mouse
1357587Pfat3_mpredicted fat percentage 3 (mouse)Not determined133610153070101640Mouse
1300573Elsgp2_melevated serum gp70 2 (mouse)Not determined135061682884617027Mouse
10412109Bxs7_mBXSB/MpJ autoimmune nephritis 7 (mouse)Not determined134521044283744746Mouse
10412235Scgq5_mspontaneous crescentic glomerulonephritis QTL 5 (mouse)Not determined133606090896239162Mouse
4142314Tailaq3_mtail length adjusted QTL 3 (mouse)Not determined55720354112431103Mouse
1558850Sgp3_mserum gp70 production 3 (mouse)Not determined135647045676971314Mouse
1301445Listr2_mlisteriosis resistance 2 (mouse)Not determined1366744601100744746Mouse
4141992W6q16_mweight 6 weeks QTL 16 (mouse)Not determined55720354112431103Mouse
4142372Moo2_mmodifier of Odc2 (mouse)Not determinedX5031841184318559Mouse
15039353Nmrs35_mNAFLD-associated magnetic resonance shift 35 (mouse)134058825374588253Mouse
10412163Wra1_mwheel running activity 1 (mouse)Not determined135913260093132738Mouse
1302157Bwem2_mbody weight day 30 males 2 (mouse)Not determined133962924973629397Mouse
4142241Tailq3_mtail length QTL 3 (mouse)Not determined55720354112431103Mouse
1300941Skl6_mskeletal size (tail length) 6 (mouse)Not determined136425082198250945Mouse
1301299Sluc23_msusceptibility to lung cancer 23 (mouse)Not determined133492194368922081Mouse
4140959W10q17_mweight 10 weeks QTL 17 (mouse)Not determined55720354112431103Mouse
1357553Cia28_mcollagen induced arthritis 28 (mouse)Not determined135662924996239162Mouse
1300985Bmd13_mbone mineral density 13 (mouse)Not determined133962924973629397Mouse
1302073Pgct1_mprimordial germ cell tumor locus 1 (mouse)Not determined135382078387820897Mouse
1300862Cfbw5_mcystic fibrosis body weight 5 (mouse)Not determined133872035872720517Mouse
1301949Skull20_mskull morphology 20 (mouse)Not determined136425082198250945Mouse
1300668Pas10_mpulmonary adenoma susceptibility 10 (mouse)Not determined134148904275489158Mouse
1357563Bmch6_mbone mechanical trait 6 (mouse)Not determined135538498089385140Mouse
10402414Sgp5_mserum gp70 production 5 (mouse)Not determined1356470456105422186Mouse
1301666Eae13_msusceptibility to experimental allergic encephalomyelitis 13 (mouse)Not determined135031841184318559Mouse
26884393Humsd7_mhumerus midshaft diameter 7, 16 week (mouse)13395000076048119Mouse
1301734Acsns2_mAngiostrongylus costaricensis nematode susceptibility 2 (mouse)Not determined133610153070101640Mouse
26884396Humsd4_mhumerus midshaft diameter 4, 10 week (mouse)134785347673148119Mouse
1301801Cpfd5_mcerebellum pattern fissures (mouse)Not determined133962924973629397Mouse
4142147Mvwf4_mmodifier of von Willebrand factor 4 (mouse)Not determined20477612112898424Mouse
14746975Manh74_mmandible shape 74 (mouse)135247726986477269Mouse

Markers in Region
Results_G1_8_29_9540.seq  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381366,900,435 - 66,900,507UniSTSGRCm38
MGSCv371367,001,371 - 67,001,443UniSTSGRCm37
Celera1370,404,267 - 70,404,339UniSTS
Cytogenetic Map13B3UniSTS
Whitehead_YAC13 UniSTS


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSMUST00000021993   ⟹   ENSMUSP00000021993
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1367,048,681 - 67,053,442 (-)Ensembl
GRCm38.p6 Ensembl1366,900,617 - 66,905,378 (-)Ensembl
Ensembl Acc Id: ENSMUST00000174606
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1367,049,125 - 67,050,850 (-)Ensembl
GRCm38.p6 Ensembl1366,901,061 - 66,902,786 (-)Ensembl
RefSeq Acc Id: NM_026219   ⟹   NP_080495
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391367,048,640 - 67,053,414 (-)NCBI
GRCm381366,900,576 - 66,905,350 (-)NCBI
MGSCv371367,001,557 - 67,006,286 (-)RGD
Celera1370,399,407 - 70,404,153 (+)RGD
cM Map13 ENTREZGENE
Sequence:
RefSeq Acc Id: NP_080495   ⟸   NM_026219
- UniProtKB: Q9D855 (UniProtKB/Swiss-Prot),   Q8K2E2 (UniProtKB/Swiss-Prot),   Q9CQB4 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSMUSP00000021993   ⟸   ENSMUST00000021993

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9D855-F1-model_v2 AlphaFold Q9D855 1-111 view protein structure

Promoters
RGD ID:8680678
Promoter ID:EPDNEW_M18369
Type:initiation region
Name:Uqcrb_1
Description:Mus musculus ubiquinol-cytochrome c reductase binding protein, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381366,905,325 - 66,905,385EPDNEW
RGD ID:6824471
Promoter ID:MM_KWN:14542
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day4,   BoneMarrow_0Hour,   Brain,   MEF_B4,   Spleen
Transcripts:ENSMUST00000021993
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361367,006,001 - 67,006,501 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1914780 AgrOrtholog
Ensembl Genes ENSMUSG00000021520 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000021993 ENTREZGENE
  ENSMUST00000021993.5 UniProtKB/TrEMBL
Gene3D-CATH 1.10.1090.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro QCR7 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  QCR7_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:67530 UniProtKB/TrEMBL
MGD MGI:1914780 ENTREZGENE
NCBI Gene 67530 ENTREZGENE
PANTHER CYTOCHROME B-C1 COMPLEX SUBUNIT 7 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR12022 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam UCR_14kD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Uqcrb PhenoGen
PIRSF Bc1_14K UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF81524 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt Q8K2E2 ENTREZGENE
  Q9CQB4 ENTREZGENE, UniProtKB/TrEMBL
  Q9D855 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary Q8K2E2 UniProtKB/Swiss-Prot