Ctdp1 (CTD phosphatase subunit 1) - Rat Genome Database

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Gene: Ctdp1 (CTD phosphatase subunit 1) Mus musculus
Analyze
Symbol: Ctdp1
Name: CTD phosphatase subunit 1
RGD ID: 1323375
MGI Page MGI
Description: Predicted to enable RNA polymerase II CTD heptapeptide repeat phosphatase activity; TFIIF-class transcription factor complex binding activity; and Tat protein binding activity. Predicted to be involved in several processes, including exit from mitosis; negative regulation of cell growth involved in cardiac muscle cell development; and positive regulation by host of viral transcription. Predicted to be located in microtubule cytoskeleton; midbody; and nucleoplasm. Predicted to be part of protein-containing complex. Is expressed in several structures, including heart; liver; lung; nervous system; and spleen. Orthologous to human CTDP1 (CTD phosphatase subunit 1).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 4930563P03Rik; AW553592; CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1; CTD (carboxy-terminal domina, RNA polymerase II, polypeptide A) phosphatase, subunit 1; RNA polymerase II subunit A C-terminal domain phosphatase; TFIIF-associating CTD phosphatase
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391880,451,174 - 80,522,959 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1880,451,174 - 80,512,910 (-)EnsemblGRCm39 Ensembl
GRCm381880,407,959 - 80,478,739 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1880,407,959 - 80,469,695 (-)EnsemblGRCm38mm10GRCm38
MGSCv371880,604,698 - 80,666,406 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361880,570,018 - 80,631,726 (-)NCBIMGSCv36mm8
Celera1881,529,536 - 81,591,205 (-)NCBICelera
Cytogenetic Map18E3NCBI
cM Map1853.48NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Updating the RNA polymerase CTD code: adding gene-specific layers. Egloff S, etal., Trends Genet. 2012 Jul;28(7):333-41. doi: 10.1016/j.tig.2012.03.007. Epub 2012 May 21.
2. The writers, readers, and functions of the RNA polymerase II C-terminal domain code. Jeronimo C, etal., Chem Rev. 2013 Nov 13;113(11):8491-522. doi: 10.1021/cr4001397. Epub 2013 Jul 10.
3. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
4. MGDs mouse GO annotations MGD data from the GO Consortium
5. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
6. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
7. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
8. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:12477932   PMID:12520002   PMID:14610273   PMID:15226435   PMID:15489334   PMID:15782199   PMID:16141072  
PMID:16141073   PMID:17978174   PMID:18799693   PMID:21677750   PMID:21873635   PMID:32325033   PMID:33408128   PMID:38355793  


Genomics

Comparative Map Data
Ctdp1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391880,451,174 - 80,522,959 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1880,451,174 - 80,512,910 (-)EnsemblGRCm39 Ensembl
GRCm381880,407,959 - 80,478,739 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1880,407,959 - 80,469,695 (-)EnsemblGRCm38mm10GRCm38
MGSCv371880,604,698 - 80,666,406 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361880,570,018 - 80,631,726 (-)NCBIMGSCv36mm8
Celera1881,529,536 - 81,591,205 (-)NCBICelera
Cytogenetic Map18E3NCBI
cM Map1853.48NCBI
CTDP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381879,676,768 - 79,756,625 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1879,679,803 - 79,754,503 (+)EnsemblGRCh38hg38GRCh38
GRCh371877,439,803 - 77,516,625 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361875,540,789 - 75,615,495 (+)NCBINCBI36Build 36hg18NCBI36
Build 341875,540,852 - 75,615,495NCBI
Celera1874,215,047 - 74,287,164 (+)NCBICelera
Cytogenetic Map18q23NCBI
HuRef1874,064,930 - 74,138,466 (+)NCBIHuRef
CHM1_11877,434,835 - 77,507,005 (+)NCBICHM1_1
T2T-CHM13v2.01879,950,566 - 80,031,824 (+)NCBIT2T-CHM13v2.0
Ctdp1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81876,129,243 - 76,193,404 (-)NCBIGRCr8
mRatBN7.21873,854,277 - 73,916,232 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1873,854,282 - 73,916,457 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1875,956,857 - 76,017,952 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01876,626,207 - 76,687,291 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01874,471,831 - 74,532,918 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01876,922,913 - 76,985,095 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1876,922,934 - 76,984,203 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01871,827,648 - 71,889,829 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41877,304,752 - 77,365,895 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11877,378,694 - 77,439,016 (-)NCBI
Celera1872,513,356 - 72,574,466 (-)NCBICelera
Cytogenetic Map18q12.3NCBI
Ctdp1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540262,817,974 - 62,914,276 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540262,817,822 - 62,914,250 (+)NCBIChiLan1.0ChiLan1.0
CTDP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21797,299,366 - 97,377,470 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11882,991,978 - 83,070,099 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01873,279,510 - 73,357,718 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11876,646,641 - 76,720,928 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1876,646,641 - 76,722,573 (+)Ensemblpanpan1.1panPan2
CTDP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11886,973 - 945,994 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1762,020 - 946,142 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha11,890,781 - 1,949,811 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01686,920 - 745,968 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1563,434 - 745,698 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11745,299 - 798,384 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01685,224 - 744,377 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01856,454 - 915,492 (-)NCBIUU_Cfam_GSD_1.0
Ctdp1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494415,048,180 - 15,085,958 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936616369,893 - 407,093 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936616369,306 - 407,083 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CTDP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1145,769,771 - 145,811,678 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11145,769,763 - 145,811,673 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21311,558,184 - 311,582,528 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CTDP1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.118479,476 - 549,546 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl18478,543 - 544,258 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606025,723,426 - 25,796,410 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ctdp1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624806621,804 - 719,942 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624806621,087 - 720,044 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Ctdp1
2310 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:678
Count of miRNA genes:345
Interacting mature miRNAs:407
Transcripts:ENSMUST00000036229, ENSMUST00000160434, ENSMUST00000161003
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1302099Hdlq30_mHDL QTL 30 (mouse)Not determined185166830085668468Mouse
4141757Sicd1_mseizure-induced cell death 1 (mouse)Not determined188017526489590914Mouse
11252137Modvl5_mmodifier of vacuolated lens 5 (mouse)185105215685052311Mouse
1558803W3q16_mweight 3 weeks QTL 16 (mouse)Not determined186127244881491831Mouse
10412244Par5_mpulmonary adenoma resistance 5 (mouse)Not determined185166830085668468Mouse
1301853Heal9_mwound healing/regeneration 9 (mouse)Not determined185280527686805416Mouse
1302109Sluc28_msusceptibility to lung cancer 28 (mouse)Not determined185993532190720763Mouse
1357639Obsty4_mobesity 4 (mouse)Not determined183961991484638778Mouse
4140971Mbmq1_mmale body mass QTL 1 (mouse)Not determined5799028190720763Mouse
12880410V125Dq13_mvitamin D active form serum level QTL 13 (mouse)185643307190433071Mouse
15014786Mvlq2_mmacrovesicular liver lesion QTL 2 (mouse)187156938890720763Mouse
12880428V125Dq14_mvitamin D active form serum level QTL 14 (mouse)185743307190720763Mouse
1558782Orgwq9_morgan weight QTL 9 (mouse)Not determined186127244882604728Mouse
1357630Tgq1_mtriglyceride QTL 1 (mouse)Not determined185105215685052311Mouse
12880430Fgf23lq4_mFGF23 serum level QTL 4 (mouse)185643307190433071Mouse
11039492Ltpr8a_mLeishmania tropica response 8a (mouse)185918009290720763Mouse
11039493Ltpr8d_mLeishmania tropica response 8d (mouse)184687490380875042Mouse
10401904Sicd4_mseizure-induced cell death 4 (mouse)Not determined186980527685514143Mouse
11039494Ltpr8b_mLeishmania tropica response 8b (mouse)184687490380875042Mouse
1301500Szs4_mseizure susceptibility 4 (mouse)Not determined185497587385514143Mouse
11039495Ltpr8c_mLeishmania tropica response 8c (mouse)185918009290720763Mouse
4141132Eae18_mexperimental allergic encephalomyelitis susceptibility 18 (mouse)Not determined5759055982604728Mouse
1302183Pas7_mpulmonary adenoma susceptibility 7 (mouse)Not determined187274559484144595Mouse
11049564Lmr29_mleishmaniasis resistance 29 (mouse)185918009290720763Mouse
1301798Hdlq31_mHDL QTL 31 (mouse)Not determined186714438990720763Mouse
4142153Idd21.1_minsulin dependent diabetes susceptibility 21.1 (mouse)Not determined187456233884144595Mouse
1301353Lbw6_mlupus NZB x NZW 6 (mouse)Not determined185756233890720763Mouse
1301103Pgia11_mproteoglycan induced arthritis 11 (mouse)Not determined185991418490720763Mouse

Markers in Region
AW553592  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381880,408,274 - 80,408,406UniSTSGRCm38
MGSCv371880,605,013 - 80,605,145UniSTSGRCm37
Celera1881,529,851 - 81,529,983UniSTS
Cytogenetic Map18E3UniSTS
cM Map1854.0UniSTS
Whitehead/MRC_RH18968.58UniSTS
UniSTS:237856  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381880,449,050 - 80,449,363UniSTSGRCm38
MGSCv371880,645,789 - 80,646,102UniSTSGRCm37
Celera1881,570,598 - 81,570,911UniSTS
Cytogenetic Map18E3UniSTS
cM Map1854.0UniSTS


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_026295 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006526525 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011247096 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_003952539 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC127256 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK016213 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK017665 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK044530 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK080231 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK156617 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK183826 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK185388 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK186350 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK187438 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK205509 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK206583 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC052934 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC053435 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY239926 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466528 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000036229   ⟹   ENSMUSP00000038938
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1880,451,174 - 80,512,910 (-)Ensembl
GRCm38.p6 Ensembl1880,407,959 - 80,469,695 (-)Ensembl
Ensembl Acc Id: ENSMUST00000160434   ⟹   ENSMUSP00000157414
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1880,451,180 - 80,484,003 (-)Ensembl
GRCm38.p6 Ensembl1880,407,965 - 80,440,788 (-)Ensembl
Ensembl Acc Id: ENSMUST00000161003   ⟹   ENSMUSP00000123705
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1880,451,180 - 80,484,074 (-)Ensembl
GRCm38.p6 Ensembl1880,407,965 - 80,440,859 (-)Ensembl
RefSeq Acc Id: NM_026295   ⟹   NP_080571
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391880,451,174 - 80,512,907 (-)NCBI
GRCm381880,407,959 - 80,469,692 (-)NCBI
MGSCv371880,604,698 - 80,666,406 (-)RGD
Celera1881,529,536 - 81,591,205 (-)RGD
cM Map18 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006526525   ⟹   XP_006526588
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391880,451,176 - 80,522,959 (-)NCBI
GRCm381880,407,961 - 80,478,739 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011247096   ⟹   XP_011245398
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391880,451,178 - 80,512,786 (-)NCBI
GRCm381880,407,963 - 80,469,571 (-)NCBI
Sequence:
RefSeq Acc Id: XR_003952539
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391880,451,178 - 80,522,959 (-)NCBI
GRCm381880,420,453 - 80,478,739 (-)NCBI
Sequence:
RefSeq Acc Id: NP_080571   ⟸   NM_026295
- UniProtKB: Q9D4S8 (UniProtKB/Swiss-Prot),   Q7TSS7 (UniProtKB/Swiss-Prot),   Q7TSG2 (UniProtKB/Swiss-Prot),   Q3U0S4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006526588   ⟸   XM_006526525
- Peptide Label: isoform X1
- UniProtKB: Q3U0S4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011245398   ⟸   XM_011247096
- Peptide Label: isoform X2
- UniProtKB: Q3U0S4 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSMUSP00000157414   ⟸   ENSMUST00000160434
Ensembl Acc Id: ENSMUSP00000038938   ⟸   ENSMUST00000036229
Ensembl Acc Id: ENSMUSP00000123705   ⟸   ENSMUST00000161003
Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q7TSG2-F1-model_v2 AlphaFold Q7TSG2 1-960 view protein structure

Promoters
RGD ID:13678258
Promoter ID:EPDNEW_M23278
Type:initiation region
Name:Ctdp1_1
Description:Mus musculus CTD (carboxy-terminal domain, RNA polymerase II,polypeptide A) phosphatase, subunit 1 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381880,469,692 - 80,469,752EPDNEW
RGD ID:6829162
Promoter ID:MM_KWN:25817
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain
Transcripts:ENSMUST00000114707
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361880,633,116 - 80,633,616 (-)MPROMDB
RGD ID:6829163
Promoter ID:MM_KWN:25818
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain
Transcripts:OTTMUST00000077169,   OTTMUST00000077309
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361880,637,466 - 80,637,966 (-)MPROMDB
RGD ID:6829182
Promoter ID:MM_KWN:25819
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:AK085185_GM9456,   ENSMUST00000036229
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361880,665,151 - 80,667,757 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1926953 AgrOrtholog
Ensembl Genes ENSMUSG00000033323 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000036229 ENTREZGENE
  ENSMUST00000036229.13 UniProtKB/Swiss-Prot
  ENSMUST00000160434.3 UniProtKB/TrEMBL
  ENSMUST00000161003.2 UniProtKB/TrEMBL
Gene3D-CATH 2.40.50.100 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.40.50.1000 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.40.50.10190 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  S15/NS1, RNA-binding UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro BRCT_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  BRCT_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Fcp1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  FCP1_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  FCP1_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  FCP1_euk UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  HAD-like_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  HAD_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Single_hybrid_motif UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:67655 UniProtKB/Swiss-Prot
MGD MGI:1926953 ENTREZGENE
NCBI Gene Ctdp1 ENTREZGENE
PANTHER PTHR23081 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RNA POLYMERASE II SUBUNIT A C-TERMINAL DOMAIN PHOSPHATASE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam BRCT UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  FCP1_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  NIF UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Ctdp1 PhenoGen
PROSITE BRCT UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  FCP1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART BRCT UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CPDc UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF51230 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF52113 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF56784 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A494B8Z5_MOUSE UniProtKB/TrEMBL
  CTDP1_MOUSE UniProtKB/Swiss-Prot
  E0CZ13_MOUSE UniProtKB/TrEMBL
  Q3U0S4 ENTREZGENE, UniProtKB/TrEMBL
  Q7TSG2 ENTREZGENE
  Q7TSS7 ENTREZGENE
  Q9D4S8 ENTREZGENE
UniProt Secondary Q7TSS7 UniProtKB/Swiss-Prot
  Q9D4S8 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2024-08-21 Ctdp1  CTD phosphatase subunit 1  Ctdp1  CTD (carboxy-terminal domina, RNA polymerase II, polypeptide A) phosphatase, subunit 1  Symbol and/or name change 5135510 APPROVED
2024-08-21 Ctdp1  CTD (carboxy-terminal domina, RNA polymerase II, polypeptide A) phosphatase, subunit 1  Ctdp1  CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1  Symbol and/or name change 5135510 APPROVED
2024-08-21 Ctdp1  CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1  Ctdp1  CTD phosphatase subunit 1  Symbol and/or name change 5135510 APPROVED
2023-06-27 Ctdp1  CTD phosphatase subunit 1  Ctdp1  CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1  Symbol and/or name change 5135510 APPROVED