Sipa1l3 (signal-induced proliferation-associated 1 like 3) - Rat Genome Database

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Gene: Sipa1l3 (signal-induced proliferation-associated 1 like 3) Mus musculus
Analyze
Symbol: Sipa1l3
Name: signal-induced proliferation-associated 1 like 3
RGD ID: 1322893
MGI Page MGI
Description: Predicted to enable GTPase activator activity. Involved in several processes, including epithelial cell morphogenesis; establishment of epithelial cell polarity; and eye development. Acts upstream of or within hematopoietic progenitor cell differentiation. Predicted to be located in several cellular components, including nucleoplasm; stress fiber; and tricellular tight junction. Predicted to be active in Golgi apparatus and plasma membrane. Is expressed in lens; lens anterior epithelium; lens fiber; lens vesicle; and lens vesicle anterior epithelium. Human ortholog(s) of this gene implicated in cataract 45. Orthologous to human SIPA1L3 (signal induced proliferation associated 1 like 3).
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: 2610511M17Rik; signal-induced proliferation-associated 1-like protein 3; SIPA1-like protein 3; SPA-1-like protein 3
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39729,016,687 - 29,218,694 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl729,019,797 - 29,218,066 (-)EnsemblGRCm39 Ensembl
GRCm38729,320,372 - 29,519,161 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl729,320,372 - 29,518,641 (-)EnsemblGRCm38mm10GRCm38
MGSCv37730,105,397 - 30,290,479 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36729,029,138 - 29,214,220 (-)NCBIMGSCv36mm8
Celera723,890,739 - 24,076,586 (-)NCBICelera
Cytogenetic Map7B1NCBI
cM Map716.94NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View
cataract 45  (ISO)

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10512203   PMID:11042159   PMID:11076861   PMID:12477932   PMID:12520002   PMID:12904583   PMID:14610273   PMID:15368895   PMID:15840001   PMID:16141072  
PMID:16141073   PMID:17967808   PMID:18799693   PMID:21873635   PMID:22323457   PMID:24029230   PMID:26231217   PMID:28671696   PMID:28951961   PMID:32325033   PMID:33378226   PMID:37142655  


Genomics

Comparative Map Data
Sipa1l3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39729,016,687 - 29,218,694 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl729,019,797 - 29,218,066 (-)EnsemblGRCm39 Ensembl
GRCm38729,320,372 - 29,519,161 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl729,320,372 - 29,518,641 (-)EnsemblGRCm38mm10GRCm38
MGSCv37730,105,397 - 30,290,479 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36729,029,138 - 29,214,220 (-)NCBIMGSCv36mm8
Celera723,890,739 - 24,076,586 (-)NCBICelera
Cytogenetic Map7B1NCBI
cM Map716.94NCBI
SIPA1L3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381937,907,208 - 38,208,369 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1937,907,208 - 38,208,369 (+)EnsemblGRCh38hg38GRCh38
GRCh371938,397,848 - 38,699,009 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361943,089,708 - 43,390,849 (+)NCBINCBI36Build 36hg18NCBI36
Celera1935,198,809 - 35,501,239 (+)NCBICelera
Cytogenetic Map19q13.13-q13.2NCBI
HuRef1934,846,529 - 35,148,312 (+)NCBIHuRef
CHM1_11938,398,247 - 38,699,350 (+)NCBICHM1_1
T2T-CHM13v2.01940,709,260 - 41,010,527 (+)NCBIT2T-CHM13v2.0
Sipa1l3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8193,746,187 - 93,953,606 (-)NCBIGRCr8
mRatBN7.2184,618,714 - 84,825,956 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl184,618,719 - 84,703,802 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx190,030,178 - 90,115,028 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0198,489,938 - 98,575,062 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0191,786,023 - 91,870,870 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0187,260,832 - 87,467,846 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl187,260,835 - 87,468,288 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0188,439,882 - 88,646,004 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4184,456,418 - 84,493,577 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1184,534,530 - 84,571,688 (-)NCBI
Celera179,005,326 - 79,042,711 (-)NCBICelera
Cytogenetic Map1q21NCBI
Sipa1l3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554681,212,102 - 1,438,527 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554681,212,102 - 1,438,527 (-)NCBIChiLan1.0ChiLan1.0
SIPA1L3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22044,201,874 - 44,514,704 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11946,072,608 - 46,385,883 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01935,006,279 - 35,317,501 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11943,582,112 - 43,872,068 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1943,749,134 - 43,869,953 (+)Ensemblpanpan1.1panPan2
SIPA1L3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11114,768,828 - 115,003,366 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1114,770,741 - 114,867,395 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1114,172,031 - 114,406,877 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01115,370,541 - 115,605,579 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1115,364,221 - 115,605,116 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11114,943,275 - 115,162,996 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01114,561,379 - 114,781,148 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01115,610,996 - 115,845,859 (-)NCBIUU_Cfam_GSD_1.0
Sipa1l3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934912,609,207 - 12,837,350 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936801873,277 - 1,004,317 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936801775,208 - 1,002,706 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SIPA1L3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl646,908,410 - 47,139,518 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1646,948,078 - 47,139,551 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2642,522,564 - 42,598,357 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SIPA1L3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1632,548,602 - 32,852,769 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl632,671,179 - 32,837,875 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607310,489,241 - 10,793,088 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Sipa1l3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462479411,468,948 - 11,699,806 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462479411,468,955 - 11,697,301 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Sipa1l3
12000 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:4692
Count of miRNA genes:793
Interacting mature miRNAs:1040
Transcripts:ENSMUST00000085809, ENSMUST00000181975, ENSMUST00000182009, ENSMUST00000182011, ENSMUST00000182223, ENSMUST00000182236, ENSMUST00000182484, ENSMUST00000182529, ENSMUST00000182702, ENSMUST00000182780, ENSMUST00000182829, ENSMUST00000182911, ENSMUST00000183081, ENSMUST00000183085, ENSMUST00000183096, ENSMUST00000183164, ENSMUST00000183275, ENSMUST00000183330
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300722Sle3_msystemic lupus erythmatosus susceptibility 3 (mouse)Not determined7351172887142720Mouse
25314307Mlh1fc2_mMLH1 foci count 2 (mouse)76502999133501729Mouse
4141566Femwf8_mfemur work to failure 8 (mouse)Not determined1303248547032621Mouse
1301041Prnr2_mprion resistance 2 (mouse)Not determined71872879439674033Mouse
12904742Litsq2_mlitter size QTL 2 (mouse)72267388756674033Mouse
1301969Lbw5_mlupus NZB x NZW 5 (mouse)Not determined72684761560851775Mouse
1301622Eae12_msusceptibility to experimental allergic encephalomyelitis 12 (mouse)Not determined71928001553280104Mouse
11354952Pdcc1_mplasmacytoid dentritic cell compartment 1 (mouse)72306653157066531Mouse
38501068Tip1_mtuberculosis immunophenotype 1, spleen CFU (mouse)7360299972549748Mouse
25314314Sccor1_msynaptonemal complex length to mean MLH1 count ratio 1 (mouse)71333392547349748Mouse
7394747asp3_maudiogenic seizure prone 3 (mouse)Not determined72730579836842367Mouse
10449139Eosn1_meosinophil differential 1 (mouse)71248087746480877Mouse
12790989Tgl6_mtriglyceride 6 (mouse)72754054961540549Mouse
1301052Bhr6_mbronchial hyperresponsiveness 6 (mouse)Not determined71984225053842367Mouse
11522751Cocia17_mcocaine-induced activity, QTL 17 (mouse)71313520447135204Mouse
12792978Fbmd3_mfemoral bone mineral density 3, females only (mouse)77050288142367832Mouse
1301158Eae4_msusceptibility to experimental allergic encephalomyelitis 4 (mouse)Not determined719147398141919804Mouse
1301572Sluc30_msusceptibility to lung cancer 30 (mouse)Not determined7243169636431844Mouse
1357699Nhdlq6_mnon-HDL QTL 6 (mouse)Not determined7998886743988984Mouse
10449158Eosn3_meosinophil differential 3 (mouse)71248087746480877Mouse
10412199Sst2_msusceptibility to tuberculosis 2 (mouse)Not determined718728794119485380Mouse
1558893Spir1_mStreptococcus pneumoniae infection resistance 1 (mouse)Not determined71030579844305936Mouse
1301709Bdt4_mbone density traits 4 (mouse)Not determined72288857256888716Mouse
1559016Drsi_mDCC-related Spp1 induction (mouse)Not determined71663729349159331Mouse

Markers in Region
D7Mit116  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38729,432,519 - 29,432,601UniSTSGRCm38
MGSCv37730,217,538 - 30,217,620UniSTSGRCm37
Celera724,003,773 - 24,003,855UniSTS
Cytogenetic Map7B1UniSTS
cM Map710.7UniSTS
Whitehead Genetic710.9UniSTS
Whitehead/MRC_RH7401.12UniSTS


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001081028 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006540397 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006540399 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006540400 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006540401 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006540402 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006540403 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006540404 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006540405 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011250727 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011250728 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011250729 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011250730 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011250731 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011250732 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017312346 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC164640 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC166079 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK012129 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK041920 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK044193 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK087819 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK144537 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK154121 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK163313 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK171182 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK172968 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC034106 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC095969 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC116408 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC128493 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC144792 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC145739 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC152360 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC152361 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466593 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000085809   ⟹   ENSMUSP00000082965
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl729,019,803 - 29,204,885 (-)Ensembl
GRCm38.p6 Ensembl729,320,378 - 29,505,460 (-)Ensembl
Ensembl Acc Id: ENSMUST00000181975   ⟹   ENSMUSP00000138592
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl729,100,187 - 29,218,037 (-)Ensembl
GRCm38.p6 Ensembl729,400,762 - 29,518,612 (-)Ensembl
Ensembl Acc Id: ENSMUST00000182009
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl729,020,759 - 29,053,644 (-)Ensembl
GRCm38.p6 Ensembl729,321,334 - 29,354,219 (-)Ensembl
Ensembl Acc Id: ENSMUST00000182011
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl729,083,681 - 29,204,877 (-)Ensembl
GRCm38.p6 Ensembl729,384,256 - 29,505,452 (-)Ensembl
Ensembl Acc Id: ENSMUST00000182223
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl729,019,803 - 29,053,722 (-)Ensembl
GRCm38.p6 Ensembl729,320,378 - 29,354,297 (-)Ensembl
Ensembl Acc Id: ENSMUST00000182236
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl729,100,365 - 29,218,040 (-)Ensembl
GRCm38.p6 Ensembl729,400,940 - 29,518,615 (-)Ensembl
Ensembl Acc Id: ENSMUST00000182484   ⟹   ENSMUSP00000138714
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl729,021,547 - 29,067,243 (-)Ensembl
GRCm38.p6 Ensembl729,322,122 - 29,367,818 (-)Ensembl
Ensembl Acc Id: ENSMUST00000182529
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl729,070,213 - 29,077,170 (-)Ensembl
GRCm38.p6 Ensembl729,370,788 - 29,377,745 (-)Ensembl
Ensembl Acc Id: ENSMUST00000182702
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl729,100,292 - 29,218,066 (-)Ensembl
GRCm38.p6 Ensembl729,400,867 - 29,518,641 (-)Ensembl
Ensembl Acc Id: ENSMUST00000182780   ⟹   ENSMUSP00000138311
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl729,021,252 - 29,028,413 (-)Ensembl
GRCm38.p6 Ensembl729,321,827 - 29,328,988 (-)Ensembl
Ensembl Acc Id: ENSMUST00000182829
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl729,022,851 - 29,041,293 (-)Ensembl
GRCm38.p6 Ensembl729,323,426 - 29,341,868 (-)Ensembl
Ensembl Acc Id: ENSMUST00000182911
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl729,065,009 - 29,066,716 (-)Ensembl
GRCm38.p6 Ensembl729,365,584 - 29,367,291 (-)Ensembl
Ensembl Acc Id: ENSMUST00000183081
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl729,193,978 - 29,217,985 (-)Ensembl
GRCm38.p6 Ensembl729,494,553 - 29,518,560 (-)Ensembl
Ensembl Acc Id: ENSMUST00000183085
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl729,216,196 - 29,217,980 (-)Ensembl
GRCm38.p6 Ensembl729,516,771 - 29,518,555 (-)Ensembl
Ensembl Acc Id: ENSMUST00000183096   ⟹   ENSMUSP00000138171
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl729,019,803 - 29,204,885 (-)Ensembl
GRCm38.p6 Ensembl729,320,378 - 29,505,460 (-)Ensembl
Ensembl Acc Id: ENSMUST00000183164
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl729,030,529 - 29,038,488 (-)Ensembl
GRCm38.p6 Ensembl729,331,104 - 29,339,063 (-)Ensembl
Ensembl Acc Id: ENSMUST00000183275   ⟹   ENSMUSP00000138381
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl729,066,129 - 29,067,251 (-)Ensembl
GRCm38.p6 Ensembl729,366,704 - 29,367,826 (-)Ensembl
Ensembl Acc Id: ENSMUST00000183330   ⟹   ENSMUSP00000138345
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl729,019,797 - 29,077,030 (-)Ensembl
GRCm38.p6 Ensembl729,320,372 - 29,377,605 (-)Ensembl
RefSeq Acc Id: NM_001081028   ⟹   NP_001074497
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39729,019,803 - 29,204,885 (-)NCBI
GRCm38729,320,378 - 29,505,460 (-)NCBI
MGSCv37730,105,397 - 30,290,479 (-)RGD
Celera723,890,739 - 24,076,586 (-)RGD
cM Map7 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006540397   ⟹   XP_006540460
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39729,023,174 - 29,218,694 (-)NCBI
GRCm38729,323,749 - 29,518,551 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006540399   ⟹   XP_006540462
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39729,023,174 - 29,204,877 (-)NCBI
GRCm38729,323,749 - 29,505,452 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006540400   ⟹   XP_006540463
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39729,023,174 - 29,204,885 (-)NCBI
GRCm38729,323,749 - 29,505,460 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006540401   ⟹   XP_006540464
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39729,023,174 - 29,206,061 (-)NCBI
GRCm38729,323,749 - 29,505,508 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006540402   ⟹   XP_006540465
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39729,023,174 - 29,206,061 (-)NCBI
GRCm38729,323,749 - 29,506,636 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006540403   ⟹   XP_006540466
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39729,023,174 - 29,103,764 (-)NCBI
GRCm38729,323,749 - 29,404,346 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006540404   ⟹   XP_006540467
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39729,023,174 - 29,218,694 (-)NCBI
GRCm38729,323,749 - 29,519,161 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006540405   ⟹   XP_006540468
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39729,019,800 - 29,218,694 (-)NCBI
GRCm38729,320,375 - 29,519,161 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011250727   ⟹   XP_011249029
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39729,023,174 - 29,218,694 (-)NCBI
GRCm38729,323,749 - 29,519,161 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011250728   ⟹   XP_011249030
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39729,023,174 - 29,204,930 (-)NCBI
GRCm38729,323,749 - 29,505,508 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011250729   ⟹   XP_011249031
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39729,023,174 - 29,204,930 (-)NCBI
GRCm38729,323,749 - 29,505,508 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011250730   ⟹   XP_011249032
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39729,023,174 - 29,204,930 (-)NCBI
GRCm38729,323,749 - 29,505,508 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011250731   ⟹   XP_011249033
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39729,023,174 - 29,204,930 (-)NCBI
GRCm38729,323,749 - 29,505,508 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011250732   ⟹   XP_011249034
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39729,016,687 - 29,218,694 (-)NCBI
GRCm38729,320,372 - 29,519,161 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017312346   ⟹   XP_017167835
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39729,023,174 - 29,218,694 (-)NCBI
GRCm38729,323,749 - 29,518,560 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001074497 (Get FASTA)   NCBI Sequence Viewer  
  XP_006540460 (Get FASTA)   NCBI Sequence Viewer  
  XP_006540462 (Get FASTA)   NCBI Sequence Viewer  
  XP_006540463 (Get FASTA)   NCBI Sequence Viewer  
  XP_006540464 (Get FASTA)   NCBI Sequence Viewer  
  XP_006540465 (Get FASTA)   NCBI Sequence Viewer  
  XP_006540466 (Get FASTA)   NCBI Sequence Viewer  
  XP_006540467 (Get FASTA)   NCBI Sequence Viewer  
  XP_006540468 (Get FASTA)   NCBI Sequence Viewer  
  XP_011249029 (Get FASTA)   NCBI Sequence Viewer  
  XP_011249030 (Get FASTA)   NCBI Sequence Viewer  
  XP_011249031 (Get FASTA)   NCBI Sequence Viewer  
  XP_011249032 (Get FASTA)   NCBI Sequence Viewer  
  XP_011249033 (Get FASTA)   NCBI Sequence Viewer  
  XP_011249034 (Get FASTA)   NCBI Sequence Viewer  
  XP_017167835 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH34106 (Get FASTA)   NCBI Sequence Viewer  
  AAH95969 (Get FASTA)   NCBI Sequence Viewer  
  AAI16409 (Get FASTA)   NCBI Sequence Viewer  
  AAI28494 (Get FASTA)   NCBI Sequence Viewer  
  AAI44793 (Get FASTA)   NCBI Sequence Viewer  
  AAI45740 (Get FASTA)   NCBI Sequence Viewer  
  AAI52361 (Get FASTA)   NCBI Sequence Viewer  
  AAI52362 (Get FASTA)   NCBI Sequence Viewer  
  BAB28050 (Get FASTA)   NCBI Sequence Viewer  
  BAC31812 (Get FASTA)   NCBI Sequence Viewer  
  BAC40013 (Get FASTA)   NCBI Sequence Viewer  
  BAD32246 (Get FASTA)   NCBI Sequence Viewer  
  EDL24066 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000082965
  ENSMUSP00000082965.5
  ENSMUSP00000138171.2
  ENSMUSP00000138311.2
  ENSMUSP00000138345.2
  ENSMUSP00000138381.2
  ENSMUSP00000138592.2
  ENSMUSP00000138714.2
GenBank Protein G3X9J0 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_001074497   ⟸   NM_001081028
- UniProtKB: G3X9J0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006540468   ⟸   XM_006540405
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_006540467   ⟸   XM_006540404
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_006540460   ⟸   XM_006540397
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006540465   ⟸   XM_006540402
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006540462   ⟸   XM_006540399
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006540463   ⟸   XM_006540400
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006540464   ⟸   XM_006540401
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006540466   ⟸   XM_006540403
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_011249034   ⟸   XM_011250732
- Peptide Label: isoform X3
- UniProtKB: G3X9J0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011249029   ⟸   XM_011250727
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_011249031   ⟸   XM_011250729
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_011249032   ⟸   XM_011250730
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_011249033   ⟸   XM_011250731
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_011249030   ⟸   XM_011250728
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_017167835   ⟸   XM_017312346
- Peptide Label: isoform X1
- Sequence:
Ensembl Acc Id: ENSMUSP00000082965   ⟸   ENSMUST00000085809
Ensembl Acc Id: ENSMUSP00000138171   ⟸   ENSMUST00000183096
Ensembl Acc Id: ENSMUSP00000138345   ⟸   ENSMUST00000183330
Ensembl Acc Id: ENSMUSP00000138381   ⟸   ENSMUST00000183275
Ensembl Acc Id: ENSMUSP00000138311   ⟸   ENSMUST00000182780
Ensembl Acc Id: ENSMUSP00000138714   ⟸   ENSMUST00000182484
Ensembl Acc Id: ENSMUSP00000138592   ⟸   ENSMUST00000181975
Protein Domains
PDZ   Rap-GAP   Signal-induced proliferation-associated 1-like

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-G3X9J0-F1-model_v2 AlphaFold G3X9J0 1-1776 view protein structure

Promoters
RGD ID:6892538
Promoter ID:EPDNEW_M9720
Type:initiation region
Name:Sipa1l3_2
Description:Mus musculus signal-induced proliferation-associated 1 like 3, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M9721  EPDNEW_M9722  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38729,354,326 - 29,354,386EPDNEW
RGD ID:6892540
Promoter ID:EPDNEW_M9721
Type:initiation region
Name:Sipa1l3_3
Description:Mus musculus signal-induced proliferation-associated 1 like 3, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M9720  EPDNEW_M9722  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38729,505,453 - 29,505,513EPDNEW
RGD ID:6892542
Promoter ID:EPDNEW_M9722
Type:initiation region
Name:Sipa1l3_1
Description:Mus musculus signal-induced proliferation-associated 1 like 3, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M9720  EPDNEW_M9721  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38729,518,551 - 29,518,611EPDNEW
RGD ID:6842029
Promoter ID:MM_KWN:49722
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Lung,   Spleen
Transcripts:UC009GBR.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36730,156,149 - 30,156,649 (-)MPROMDB
RGD ID:6842028
Promoter ID:MM_KWN:49723
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain,   Kidney,   Lung
Transcripts:ENSMUST00000085809,   ENSMUST00000085811,   NM_001081028,   UC009GBU.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36730,290,391 - 30,290,891 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1921456 AgrOrtholog
Ensembl Genes ENSMUSG00000030583 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000085809 ENTREZGENE
  ENSMUST00000085809.11 UniProtKB/Swiss-Prot
  ENSMUST00000181975.8 UniProtKB/TrEMBL
  ENSMUST00000182484.2 UniProtKB/TrEMBL
  ENSMUST00000182780.8 UniProtKB/TrEMBL
  ENSMUST00000183096.8 UniProtKB/Swiss-Prot
  ENSMUST00000183275.2 UniProtKB/TrEMBL
  ENSMUST00000183330.8 UniProtKB/TrEMBL
Gene3D-CATH 2.30.42.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.40.50.11210 UniProtKB/Swiss-Prot
  6.10.140.210 UniProtKB/Swiss-Prot
InterPro PDZ UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PDZ_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Rap/Ran-GAP_sf UniProtKB/Swiss-Prot
  Rap1_Ran_GAP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Rap_GAP_dom UniProtKB/Swiss-Prot
  SIPA1L_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:74206 UniProtKB/Swiss-Prot
MGD MGI:1921456 ENTREZGENE
NCBI Gene 74206 ENTREZGENE
PANTHER PTHR15711:SF15 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RAP GTPASE-ACTIVATING PROTEIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam PDZ UniProtKB/TrEMBL
  Rap-GAP_dimer UniProtKB/Swiss-Prot
  Rap_GAP UniProtKB/Swiss-Prot
  SPAR_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Sipa1l3 PhenoGen
PROSITE PDZ UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RAPGAP UniProtKB/Swiss-Prot
SMART PDZ UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF111347 UniProtKB/Swiss-Prot
  SSF50156 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0AUN2_MOUSE UniProtKB/TrEMBL
  A2VCS4_MOUSE UniProtKB/TrEMBL
  A6H637_MOUSE UniProtKB/TrEMBL
  A7MCX1_MOUSE UniProtKB/TrEMBL
  G3X9J0 ENTREZGENE
  Q4VBF3_MOUSE UniProtKB/TrEMBL
  Q6A050_MOUSE UniProtKB/TrEMBL
  Q8BGC2_MOUSE UniProtKB/TrEMBL
  Q8K054_MOUSE UniProtKB/TrEMBL
  Q9CSR2_MOUSE UniProtKB/TrEMBL
  S4R1P8_MOUSE UniProtKB/TrEMBL
  S4R1S0_MOUSE UniProtKB/TrEMBL
  S4R1U8_MOUSE UniProtKB/TrEMBL
  S4R2C7_MOUSE UniProtKB/TrEMBL
  S4R2N4_MOUSE UniProtKB/TrEMBL
  SI1L3_MOUSE UniProtKB/Swiss-Prot