Ctr9 (CTR9 homolog, Paf1/RNA polymerase II complex component) - Rat Genome Database

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Gene: Ctr9 (CTR9 homolog, Paf1/RNA polymerase II complex component) Mus musculus
Analyze
Symbol: Ctr9
Name: CTR9 homolog, Paf1/RNA polymerase II complex component
RGD ID: 1322373
MGI Page MGI
Description: Enables SH2 domain binding activity. Involved in several processes, including cell surface receptor signaling pathway; cellular response to lipopolysaccharide; and endodermal cell fate commitment. Acts upstream of or within blastocyst development and negative regulation of gene expression, epigenetic. Located in euchromatin and nucleus. Part of Cdc73/Paf1 complex. Is expressed in cerebral cortex and telencephalon. Orthologous to human CTR9 (CTR9 homolog, Paf1/RNA polymerase II complex component).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: AA409336; Ctr9, Paf1/RNA polymerase II complex component, homolog; KIAA0155; mKIAA0155; p150TSP; RNA polymerase-associated protein CTR9 homolog; SH2 domain binding protein 1 (tetratricopeptide repeat containing); SH2 domain-binding protein 1; Sh2b; Sh2bp1; T; tetratricopeptide repeat-containing, SH2-binding phosphoprotein of 150 kDa; TPR-containing, SH2-binding phosphoprotein of 150 kDa; Ts; Tsbp; Tsp
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm397110,628,158 - 110,655,584 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl7110,628,158 - 110,655,584 (+)EnsemblGRCm39 Ensembl
GRCm387111,028,951 - 111,056,377 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl7111,028,951 - 111,056,377 (+)EnsemblGRCm38mm10GRCm38
MGSCv377118,172,465 - 118,199,891 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv367110,820,202 - 110,847,517 (+)NCBIMGSCv36mm8
Celera7111,006,421 - 111,033,848 (+)NCBICelera
Cytogenetic Map7E3NCBI
cM Map757.98NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
Cdc73/Paf1 complex  (IBA,IPI,ISO,ISS)
euchromatin  (IDA)
nuclear speck  (IEA)
nucleoplasm  (ISO)
nucleus  (IDA)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. The Paf1 complex: platform or player in RNA polymerase II transcription? Jaehning JA Biochim Biophys Acta. 2010 May-Jun;1799(5-6):379-88. doi: 10.1016/j.bbagrm.2010.01.001. Epub 2010 Jan 12.
2. MGDs mouse GO annotations MGD data from the GO Consortium
3. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
4. Mouse MP Annotation Import Pipeline RGD automated import pipeline
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8636124   PMID:8889548   PMID:10349636   PMID:10352232   PMID:10441734   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11217851   PMID:11544199   PMID:12465718   PMID:12477932  
PMID:15489334   PMID:15782199   PMID:16141072   PMID:16141073   PMID:17911113   PMID:19345177   PMID:20541477   PMID:21267068   PMID:21677750   PMID:21873635   PMID:23791194   PMID:23937658  
PMID:24036311   PMID:24420920   PMID:26206133   PMID:27306982   PMID:27626380   PMID:27749823   PMID:27864380   PMID:27869233   PMID:28612505   PMID:30457570   PMID:30973865   PMID:32325033  
PMID:32968282   PMID:38355793  


Genomics

Comparative Map Data
Ctr9
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm397110,628,158 - 110,655,584 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl7110,628,158 - 110,655,584 (+)EnsemblGRCm39 Ensembl
GRCm387111,028,951 - 111,056,377 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl7111,028,951 - 111,056,377 (+)EnsemblGRCm38mm10GRCm38
MGSCv377118,172,465 - 118,199,891 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv367110,820,202 - 110,847,517 (+)NCBIMGSCv36mm8
Celera7111,006,421 - 111,033,848 (+)NCBICelera
Cytogenetic Map7E3NCBI
cM Map757.98NCBI
CTR9
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381110,751,246 - 10,779,746 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1110,751,018 - 10,801,625 (+)EnsemblGRCh38hg38GRCh38
GRCh371110,772,793 - 10,801,293 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361110,729,387 - 10,757,866 (+)NCBINCBI36Build 36hg18NCBI36
Build 341110,729,386 - 10,757,870NCBI
Celera1110,894,387 - 10,922,894 (+)NCBICelera
Cytogenetic Map11p15.4NCBI
HuRef1110,445,613 - 10,474,231 (+)NCBIHuRef
CHM1_11110,771,734 - 10,800,209 (+)NCBICHM1_1
T2T-CHM13v2.01110,836,160 - 10,864,657 (+)NCBIT2T-CHM13v2.0
Ctr9
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81174,571,952 - 174,601,974 (+)NCBIGRCr8
mRatBN7.21165,137,277 - 165,167,303 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1165,137,215 - 165,167,303 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1173,474,638 - 173,504,667 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01180,660,665 - 180,690,694 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01173,344,912 - 173,374,948 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01175,839,140 - 175,869,167 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1175,839,108 - 175,869,165 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01182,823,942 - 182,853,969 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41168,784,355 - 168,814,971 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11168,894,827 - 168,925,627 (+)NCBI
Celera1163,025,762 - 163,055,778 (+)NCBICelera
Cytogenetic Map1q33NCBI
Ctr9
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541426,347,508 - 26,373,785 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541426,347,508 - 26,373,726 (+)NCBIChiLan1.0ChiLan1.0
CTR9
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2913,172,118 - 13,221,502 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11113,134,486 - 13,183,874 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01110,884,353 - 10,913,246 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11110,610,892 - 10,639,808 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1110,610,892 - 10,639,808 (+)Ensemblpanpan1.1panPan2
CTR9
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12133,915,804 - 33,949,597 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2133,915,772 - 33,949,103 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2133,480,521 - 33,514,331 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02134,792,714 - 34,826,492 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2134,792,706 - 34,826,494 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12134,052,853 - 34,086,742 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02134,224,190 - 34,258,155 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02134,516,004 - 34,549,782 (+)NCBIUU_Cfam_GSD_1.0
Ctr9
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494751,551,954 - 51,579,000 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365287,585,787 - 7,613,047 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365287,585,937 - 7,613,022 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CTR9
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl248,700,974 - 48,729,307 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1248,700,629 - 48,729,480 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2252,047,110 - 52,075,971 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CTR9
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1154,047,922 - 54,077,049 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl154,047,886 - 54,077,338 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666038151,701,811 - 151,730,736 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ctr9
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247662,823,229 - 2,851,742 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247662,823,561 - 2,851,742 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Ctr9
789 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:654
Count of miRNA genes:449
Interacting mature miRNAs:526
Transcripts:ENSMUST00000005749, ENSMUST00000123681, ENSMUST00000140220, ENSMUST00000143818, ENSMUST00000146558, ENSMUST00000146709, ENSMUST00000152019, ENSMUST00000157025
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357460Vtbt4_mvertebral trabecular bone trait 4 (mouse)Not determined7101693381135693530Mouse
25314307Mlh1fc2_mMLH1 foci count 2 (mouse)76502999133501729Mouse
27226781Tibl3_mtibia length 3, 5 week (mouse)774849748122199223Mouse
27226778Femd11_mfemur midshaft diameter 11, 16 week (mouse)756949748134001729Mouse
1301781Capsq3_mcapsaicin sensitivity related QTL 3 (mouse)Not determined787143137119485380Mouse
11039524Tbbr3_mTrypanosoma brucei brucei response 3 (mouse)7100750722134750843Mouse
27226769Tibl12_mtibia length 12, 10 week (mouse)787249208126499172Mouse
10043926Bw1n_mbody weight 1 in NSY (mouse)Not determined745161966118693530Mouse
27226765Tibl18_mtibia length 18, 16 week (mouse)781849748126499172Mouse
27226763Feml20_mfemur length 20, 16 week (mouse)785049208124199223Mouse
4142500Morq1_mmodifier of Rs1 QTL 1 (mouse)Not determined80551681114551791Mouse
1301647Elpt_melevated leptin (mouse)Not determined786500186120500329Mouse
13208555Lgth10_mbody length 10 (mouse)751649748125599172Mouse
26884408Bzwq13_mbi-zygomatic width QTL 13, 16 week (mouse)761749748121399223Mouse
1301937Skull10_mskull morphology 10 (mouse)Not determined791482996125483156Mouse
1300528Ssial3_msusceptibility to sialadenitis 3 (mouse)Not determined793391848127392041Mouse
5491192Mobq1_mmultigenic obesity QTL 1 (mouse)Not determined7105250663139250811Mouse
26884398Humsd6_mhumerus midshaft diameter 6, 16 week (mouse)778649748136901729Mouse
1301158Eae4_msusceptibility to experimental allergic encephalomyelitis 4 (mouse)Not determined719147398141919804Mouse
10412199Sst2_msusceptibility to tuberculosis 2 (mouse)Not determined718728794119485380Mouse
27226790Feml15_mfemur length 15, 10 week (mouse)787249208126499172Mouse
13524852Asrq7a_macoustic startle response 7a (mouse)7105350008139350008Mouse
13524850Asrq7_macoustic startle response 7 (mouse)798394974132394974Mouse
1302062Stheal6_msoft tissue heal 6 (mouse)Not determined787043932121044066Mouse
4141056Lskcn2_mLSK cell number 2 (mouse)Not determined108482996118693530Mouse
26884440Sklq4_mskull length QTL 4, 5 week (mouse)765249748126499172Mouse
27095903Scvln10_msacral vertebrae length 2, 10 week (mouse)781449748126499172Mouse
27226715Metcl3_mmetatarsal-calcaneal length 3, 5 week (mouse)767849748119499223Mouse
26884444Sklq8_mskull length QTL 8, 10 week (mouse)767849748124199223Mouse
25823170Hrsq7_mhost response to SARS QTL 7, log titer (mouse)754819589116822815Mouse
1301082Bbaa16_mB.burgdorferi-associated arthritis 16 (mouse)Not determined736280015116416877Mouse
10412110Cctq1_mcentral corneal thickness QTL 1 (mouse)Not determined780551681114551791Mouse
12792978Fbmd3_mfemoral bone mineral density 3, females only (mouse)77050288142367832Mouse
1301447Fembm3_mfemoral bone morphometry 3 (mouse)Not determined7100993261134993342Mouse
10412104Tons2_mtongue size 2 (mouse)Not determined799837716133837716Mouse
1301188Heal6_mwound healing/regeneration 6 (mouse)Not determined787043932121044066Mouse
4142312Nilac4_mnicotine induced locomotor activity 4 (mouse)Not determined7102485219136485380Mouse
27226751Femd5_mfemur midshaft diameter 5, 10 week (mouse)753249748143153737Mouse
27095933Ulnl3_mulna length 3, 5 week (mouse)773149748143153737Mouse
1301105Cfld4_mcystic fibrosis lung disease 4 (mouse)Not determined7101693381135693530Mouse
1300721Cfbw3_mcystic fibrosis body weight 3 (mouse)Not determined7101693381135693530Mouse
13524524Bodwtq6_mbody wweight QTL 6 (mouse)7107245693113055693Mouse
27226745Metcl9_mmetatarsal-calcaneal length 9, 10 week (mouse)774849748122199223Mouse
27095930Ulnl10_mulna length 10, 16 week (mouse)780849748126699172Mouse
14700684Civq1_mcerebral infarct volume QTL 1 (mouse)7109707335143707335Mouse
27095923Pglq3_mpelvic girdle length QTL 3, 5 week (mouse)781249748124199223Mouse
14700687Civq5_mcerebral infarct volume QTL 5 (mouse)7109707335143707335Mouse
14700688Civq6_mcerebral infarct volume QTL 6 (mouse)7109707335143707335Mouse
27095916Scvln15_msacral vertebrae length 2, 16 week (mouse)761749748123699223Mouse
1357664Nba3_mNew Zealand Black autoimmunity 3 (mouse)Not determined791482996125483156Mouse
1301478Eae26_msusceptibility to experimental allergic encephalomyelitis 26 (mouse)Not determined798164922132165010Mouse
26884451Sklq14_mskull length QTL 14, 16 week (mouse)767849748124999172Mouse
27095910Pglq13_mpelvic girdle length QTL 13, 16 week (mouse)773049748125699172Mouse
13463473Hbbcq4_mhemoglobin concentration QTL 4 (mouse)787043932121044066Mouse
27095907Scvln4_msacral vertebrae length 2, 5 week (mouse)769949748120499223Mouse
1301997Cia7_mcollagen induced arthritis QTL 7 (mouse)Not determined785365595112533819Mouse
25394557Skmw64_mskeletal muscle weight 64, soleus (mouse)7108715780114592736Mouse
35673311Ari6_mantibody response to influenza 6, day 15, IgG2b (mouse)7108699207115099235Mouse

Markers in Region
RH124844  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm387111,055,971 - 111,056,059UniSTSGRCm38
MGSCv377118,199,485 - 118,199,573UniSTSGRCm37
Celera7111,033,442 - 111,033,530UniSTS
Cytogenetic Map7F1UniSTS
cM Map754.0UniSTS
AI785031  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm387111,049,877 - 111,049,982UniSTSGRCm38
MGSCv377118,193,391 - 118,193,496UniSTSGRCm37
Celera7111,027,348 - 111,027,453UniSTS
Cytogenetic Map7F1UniSTS
cM Map754.0UniSTS
Whitehead/MRC_RH71118.27UniSTS


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_009431 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB093211 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC159206 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AI841408 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK040205 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK040331 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK045101 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK083921 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK134990 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK140586 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK148536 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK195269 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK195433 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK201317 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK218780 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC010344 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC024749 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC053910 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC060091 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC071247 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC080719 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY012072 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466531 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  L49502 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000005749   ⟹   ENSMUSP00000005749
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7110,628,158 - 110,655,584 (+)Ensembl
GRCm38.p6 Ensembl7111,028,951 - 111,056,377 (+)Ensembl
Ensembl Acc Id: ENSMUST00000123681
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7110,650,200 - 110,651,577 (+)Ensembl
GRCm38.p6 Ensembl7111,050,993 - 111,052,370 (+)Ensembl
Ensembl Acc Id: ENSMUST00000140220
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7110,633,243 - 110,634,599 (+)Ensembl
GRCm38.p6 Ensembl7111,034,036 - 111,035,392 (+)Ensembl
Ensembl Acc Id: ENSMUST00000143818
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7110,629,422 - 110,633,263 (+)Ensembl
GRCm38.p6 Ensembl7111,030,215 - 111,034,056 (+)Ensembl
Ensembl Acc Id: ENSMUST00000146558
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7110,645,517 - 110,646,029 (+)Ensembl
GRCm38.p6 Ensembl7111,046,310 - 111,046,822 (+)Ensembl
Ensembl Acc Id: ENSMUST00000146709
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7110,628,220 - 110,630,016 (+)Ensembl
GRCm38.p6 Ensembl7111,029,013 - 111,030,809 (+)Ensembl
Ensembl Acc Id: ENSMUST00000152019
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7110,628,202 - 110,646,854 (+)Ensembl
GRCm38.p6 Ensembl7111,028,995 - 111,047,647 (+)Ensembl
Ensembl Acc Id: ENSMUST00000157025
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7110,645,517 - 110,647,186 (+)Ensembl
GRCm38.p6 Ensembl7111,046,310 - 111,047,979 (+)Ensembl
Ensembl Acc Id: ENSMUST00000209912
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7110,652,997 - 110,655,408 (+)Ensembl
GRCm38.p6 Ensembl7111,053,790 - 111,056,201 (+)Ensembl
RefSeq Acc Id: NM_009431   ⟹   NP_033457
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397110,628,158 - 110,655,584 (+)NCBI
GRCm387111,028,951 - 111,056,377 (+)ENTREZGENE
MGSCv377118,172,465 - 118,199,891 (+)RGD
Celera7111,006,421 - 111,033,848 (+)RGD
cM Map7 ENTREZGENE
Sequence:
RefSeq Acc Id: NP_033457   ⟸   NM_009431
- UniProtKB: Q8C9Y3 (UniProtKB/Swiss-Prot),   Q8C9W7 (UniProtKB/Swiss-Prot),   Q8BRD1 (UniProtKB/Swiss-Prot),   Q8BND9 (UniProtKB/Swiss-Prot),   Q7TPS6 (UniProtKB/Swiss-Prot),   Q66JX4 (UniProtKB/Swiss-Prot),   Q3UY40 (UniProtKB/Swiss-Prot),   Q3UFF5 (UniProtKB/Swiss-Prot),   Q8CHI1 (UniProtKB/Swiss-Prot),   Q62018 (UniProtKB/Swiss-Prot)
- Sequence:
Ensembl Acc Id: ENSMUSP00000005749   ⟸   ENSMUST00000005749

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q62018-F1-model_v2 AlphaFold Q62018 1-1173 view protein structure

Promoters
RGD ID:8665241
Promoter ID:EPDNEW_M10652
Type:initiation region
Name:Ctr9_1
Description:Mus musculus CTR9 homolog, Paf1/RNA polymerase II complex component, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm387111,028,995 - 111,029,055EPDNEW
RGD ID:6840886
Promoter ID:MM_KWN:52304
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000098103,   NM_009431,   OTTMUST00000058387,   UC009JFW.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv367118,172,269 - 118,172,769 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:109345 AgrOrtholog
Ensembl Genes ENSMUSG00000005609 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000005749 ENTREZGENE
  ENSMUST00000005749.6 UniProtKB/Swiss-Prot
Gene3D-CATH 1.25.40.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Ctr9 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TPR-like_helical_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TPR_repeat UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:22083 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:109345 ENTREZGENE
NCBI Gene 22083 ENTREZGENE
PANTHER PTHR14027 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RNA POLYMERASE-ASSOCIATED PROTEIN CTR9 HOMOLOG UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam TPR_10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TPR_19 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TPR_8 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Ctr9 PhenoGen
PROSITE TPR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TPR_REGION UniProtKB/Swiss-Prot
SMART TPR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP HCP-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF48452 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt CTR9_MOUSE UniProtKB/Swiss-Prot
  Q05CJ7_MOUSE UniProtKB/TrEMBL
  Q05DK2_MOUSE UniProtKB/TrEMBL
  Q3UFF5 ENTREZGENE
  Q3UY40 ENTREZGENE
  Q62018 ENTREZGENE
  Q66JX4 ENTREZGENE
  Q6IQZ4_MOUSE UniProtKB/TrEMBL
  Q7TPS6 ENTREZGENE
  Q8BND9 ENTREZGENE
  Q8BRD1 ENTREZGENE
  Q8C9W7 ENTREZGENE
  Q8C9Y3 ENTREZGENE
  Q8CHI1 ENTREZGENE
UniProt Secondary Q3UFF5 UniProtKB/Swiss-Prot
  Q3UY40 UniProtKB/Swiss-Prot
  Q66JX4 UniProtKB/Swiss-Prot
  Q7TPS6 UniProtKB/Swiss-Prot
  Q8BND9 UniProtKB/Swiss-Prot
  Q8BRD1 UniProtKB/Swiss-Prot
  Q8C9W7 UniProtKB/Swiss-Prot
  Q8C9Y3 UniProtKB/Swiss-Prot
  Q8CHI1 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-12-22 Ctr9  CTR9 homolog, Paf1/RNA polymerase II complex component    Ctr9, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)  Symbol and/or name change 5135510 APPROVED