Nup160 (nucleoporin 160) - Rat Genome Database

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Gene: Nup160 (nucleoporin 160) Mus musculus
Analyze
Symbol: Nup160
Name: nucleoporin 160
RGD ID: 1322304
MGI Page MGI
Description: A structural constituent of nuclear pore. Involved in mRNA export from nucleus. Part of nuclear pore. Human ortholog(s) of this gene implicated in nephrotic syndrome type 19. Orthologous to human NUP160 (nucleoporin 160).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 160 kDa nucleoporin; 160kDa; 2810011M03Rik; AA414952; AU020188; gene trap locus 1-13 protein; gene trap locus-13; Gtl-13; Gtl1-1; Gtl1-13; Gtl13; KIAA0197; mKIAA0197; nuclear pore complex protein Nup160; nucleoporin 160kDa; nucleoporin Nup160
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39290,504,405 - 90,570,217 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl290,507,559 - 90,566,672 (+)EnsemblGRCm39 Ensembl
GRCm38290,677,215 - 90,739,327 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl290,677,215 - 90,736,328 (+)EnsemblGRCm38mm10GRCm38
MGSCv37290,517,372 - 90,576,485 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36290,478,054 - 90,537,167 (+)NCBIMGSCv36mm8
Celera292,062,066 - 92,121,100 (+)NCBICelera
Cytogenetic Map2E1NCBI
cM Map250.32NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
kinetochore  (ISO,ISS)
nuclear envelope  (ISO)
nuclear pore  (IBA,IDA,ISO,NAS)
nuclear pore outer ring  (ISO,ISS)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. Regulation of mRNA trafficking by nuclear pore complexes. Bonnet A and Palancade B, Genes (Basel). 2014 Sep 2;5(3):767-91. doi: 10.3390/genes5030767.
2. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
3. Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Ko MS, etal., Development 2000 Apr;127(8):1737-49.
4. MGDs mouse GO annotations MGD data from the GO Consortium
5. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
6. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11564755   PMID:11684705   PMID:12089527   PMID:12477932   PMID:12520002   PMID:12791264   PMID:12904583   PMID:14610273  
PMID:15368895   PMID:15489334   PMID:16141072   PMID:16141073   PMID:18799693   PMID:21267068   PMID:21873635   PMID:24457600   PMID:26167872   PMID:28374669   PMID:28378742   PMID:29704630  
PMID:30409884   PMID:32968282   PMID:32988961   PMID:34533106   PMID:38224683  


Genomics

Comparative Map Data
Nup160
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39290,504,405 - 90,570,217 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl290,507,559 - 90,566,672 (+)EnsemblGRCm39 Ensembl
GRCm38290,677,215 - 90,739,327 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl290,677,215 - 90,736,328 (+)EnsemblGRCm38mm10GRCm38
MGSCv37290,517,372 - 90,576,485 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36290,478,054 - 90,537,167 (+)NCBIMGSCv36mm8
Celera292,062,066 - 92,121,100 (+)NCBICelera
Cytogenetic Map2E1NCBI
cM Map250.32NCBI
NUP160
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381147,778,118 - 47,848,544 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1147,778,087 - 47,848,555 (-)EnsemblGRCh38hg38GRCh38
GRCh371147,799,670 - 47,870,096 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361147,756,246 - 47,826,633 (-)NCBINCBI36Build 36hg18NCBI36
Build 341147,756,245 - 47,826,633NCBI
Celera1147,947,516 - 48,018,167 (-)NCBICelera
Cytogenetic Map11p11.2NCBI
HuRef1147,505,182 - 47,575,824 (-)NCBIHuRef
CHM1_11147,798,918 - 47,869,361 (-)NCBICHM1_1
T2T-CHM13v2.01147,943,085 - 48,013,487 (-)NCBIT2T-CHM13v2.0
Nup160
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8397,120,723 - 97,183,227 (+)NCBIGRCr8
mRatBN7.2376,665,786 - 76,729,296 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl376,665,786 - 76,724,565 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx380,143,146 - 80,201,929 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0388,741,649 - 88,800,430 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0386,592,941 - 86,652,026 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0379,496,239 - 79,562,163 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl379,498,179 - 79,551,128 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0386,204,592 - 86,269,042 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4375,041,873 - 75,102,540 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1374,970,326 - 74,998,135 (+)NCBI
Celera375,875,233 - 75,933,741 (+)NCBICelera
Cytogenetic Map3q24NCBI
Nup160
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955422561,339 - 599,575 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955422561,339 - 598,598 (+)NCBIChiLan1.0ChiLan1.0
NUP160
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2949,987,480 - 50,062,376 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11150,007,198 - 50,081,343 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01147,732,678 - 47,805,906 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11148,281,953 - 48,352,998 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1148,281,972 - 48,352,998 (-)Ensemblpanpan1.1panPan2
NUP160
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11841,859,697 - 41,902,677 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1841,855,670 - 41,902,247 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1840,609,926 - 40,634,280 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01842,534,197 - 42,558,608 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.11842,022,368 - 42,046,343 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01841,575,386 - 41,599,418 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01842,305,224 - 42,329,648 (+)NCBIUU_Cfam_GSD_1.0
Nup160
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494719,324,045 - 19,379,797 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365621,435,973 - 1,490,890 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365621,435,938 - 1,491,439 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NUP160
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl214,840,410 - 14,891,677 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1214,840,056 - 14,891,567 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2215,900,356 - 15,956,637 (-)NCBISscrofa10.2Sscrofa10.2susScr3
NUP160
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1117,468,783 - 17,540,963 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl117,469,576 - 17,541,117 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666038114,754,777 - 114,826,796 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Nup160
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247671,099,760 - 1,141,914 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247671,099,824 - 1,139,179 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Nup160
3003 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:723
Count of miRNA genes:469
Interacting mature miRNAs:554
Transcripts:ENSMUST00000057481, ENSMUST00000126503, ENSMUST00000130629, ENSMUST00000132595, ENSMUST00000136739, ENSMUST00000145669, ENSMUST00000154036
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
11038697Ltpr2d_mLeishmania tropica response 2d (mouse)286095716120095823Mouse
11038698Ltpr2c_mLeishmania tropica response 2c (mouse)286095716120095823Mouse
39128209Lwq14_mliver weight QTL 14 (mouse)220897778118894840Mouse
1558738W6q1_mweight 6 weeks QTL 1 (mouse)Not determined220897778118894840Mouse
13824983Vclq1_mcurvilinear velocity QTL 1 (mouse)261830344136841920Mouse
11528549Sluc31_msusceptibility to lung cancer 31 (mouse)274524117129213005Mouse
4141236Hbnr5_mHeligmosomoides bakeri nematode resistance 5 (mouse)Not determined31214567105143570Mouse
1302174Dssc2_mdextran sodium sulfate induced colitis QTL2 (mouse)Not determined224224632148700377Mouse
1301405Etohr_methanol response acute (mouse)Not determined26300595497006113Mouse
1301660Iba1_minduction of brown adipocytes 1 (mouse)Not determined267647887101648142Mouse
1558915W3q1_mweight 3 weeks QTL 1 (mouse)Not determined220897778118894840Mouse
1301703Bomd3_mbone mineral density 3 (mouse)Not determined26300595497006113Mouse
11532731Sluc31a_msusceptibility to lung cancer 31a (mouse)288015003122015170Mouse
1301834Bits1_mbitterness sensitivity 1 (mouse)Not determined287440643121440778Mouse
1301769Orgwq2_morgan weight QTL 2 (mouse)Not determined2388712693421651Mouse
1357454Kidq1_mkidney weight QTL 1 (mouse)Not determined220897778118894840Mouse
4141155Plast2b_mplasma plant sterol 2b (mouse)Not determined284013198148522175Mouse
1357577Trmq3_mT cell ratio modifier QTL 3 (mouse)Not determined260520612119355518Mouse
1558966W10q9_mweight 10 weeks QTL 9 (mouse)Not determined220897778118894840Mouse
4141854T2dm2sa_mtype 2 diabetes mellitus 2 in SMXA RI mice (mouse)Not determined229307947148374934Mouse
4141406Alpq2_malcohol preference QTL 2 (mouse)Not determined25752411791524288Mouse
1301873Hsl1_mhyperoxia susceptibility locus 1 (mouse)Not determined26357015497570301Mouse
1558901Skmw8_mskeletal muscle weight 8 (mouse)Not determined284008488118008593Mouse
1558899Egq1_mearly growth QTL 1 (mouse)Not determined220897778118894840Mouse
1357681Hrtq1_mheart weight QTL 1 (mouse)Not determined220897778118894840Mouse
1300662Etohila_methanol induced locomotor activity (mouse)Not determined26300595497006113Mouse
1301109Dntcs2_mdental caries susceptibility 2 (mouse)Not determined240885493114910165Mouse
4141657Mohg1_mmodifier of hg 1 (mouse)Not determined276678758103095823Mouse
1300852Lmr14_mleishmaniasis resistance 14 (mouse)Not determined286095716120095823Mouse
1357436Splq1_mspleen weight QTL 1 (mouse)Not determined220897778118894840Mouse
10053681Lith24_mlithogenic gene 24 (mouse)Not determined26300595497006113Mouse
1301882Etohc2_methanol consumption 2 (mouse)Not determined268724269102724407Mouse
1301048Actre2_mactivity response to ethanol 2 (mouse)Not determined26300595497006113Mouse
10412082Hylaq1_mHyperlocomotor activity related QTL 1 (mouse)Not determined284013198148667470Mouse
1357881Estoq1_membryo survival total QTL 1 (mouse)Not determined220897778118894840Mouse
1301374Cplaq7_mcircadian period of locomotor activity 7 (mouse)Not determined276421483110421651Mouse
5491197Mobq5_mmultigenic obesity QTL 5 (mouse)Not determined265269746162518926Mouse
1301948Elsgp3_melevated serum gp70 3 (mouse)Not determined268724269102724407Mouse
10043894Bw22_mbody weight QTL 22 (mouse)Not determined280895334114895334Mouse
5491196Mobq6_mmultigenic obesity QTL 6 (mouse)Not determined285724269180896594Mouse
15092054Egrme5_mearly growth rate, maternal effect 5 (mouse)282190187118004745Mouse
4142223Femwf4_mfemur work to failure 4 (mouse)Not determined88143423122143570Mouse
1301344Lith1_mlithogenic gene 1 (mouse)Not determined245347635145312647Mouse
11049565Lmr28g_mleishmaniasis resistance 28g (mouse)286095716120095823Mouse
13463482Mchq17_mmean corpuscular hemoglobin QTL 17 (mouse)267647887101648142Mouse
4142088Parms1_mpatched associated RMS 1 (mouse)Not determined74524117114123532Mouse
10044002Hdl7_mHDL level 7 (mouse)Not determined26300595497006113Mouse
12738429Lfibq18_mliver fibrosis QTL 18 (mouse)25791999191919991Mouse

Markers in Region
RH136379  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38290,702,580 - 90,702,787UniSTSGRCm38
MGSCv37290,542,737 - 90,542,944UniSTSGRCm37
Celera292,087,427 - 92,087,634UniSTS
Cytogenetic Map2E1UniSTS
AA414952  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38290,702,581 - 90,702,792UniSTSGRCm38
MGSCv37290,542,738 - 90,542,949UniSTSGRCm37
Celera292,087,428 - 92,087,639UniSTS
Cytogenetic Map2E1UniSTS
Whitehead/MRC_RH21268.16UniSTS
RH125555  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38290,702,424 - 90,702,780UniSTSGRCm38
MGSCv37290,542,581 - 90,542,937UniSTSGRCm37
Celera292,087,271 - 92,087,627UniSTS
Cytogenetic Map2E1UniSTS


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001418509 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001418510 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001418511 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_021512 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_184761 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006499968 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030251919 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AF104415 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK012715 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK050952 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK155492 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK160685 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK164802 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK171218 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK172911 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL714026 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL935132 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC052450 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC054523 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466519 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000057481   ⟹   ENSMUSP00000059289
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl290,507,559 - 90,566,672 (+)Ensembl
GRCm38.p6 Ensembl290,677,215 - 90,736,328 (+)Ensembl
Ensembl Acc Id: ENSMUST00000126503
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl290,563,068 - 90,566,128 (+)Ensembl
GRCm38.p6 Ensembl290,732,724 - 90,735,784 (+)Ensembl
Ensembl Acc Id: ENSMUST00000130629
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl290,530,085 - 90,532,413 (+)Ensembl
GRCm38.p6 Ensembl290,699,741 - 90,702,069 (+)Ensembl
Ensembl Acc Id: ENSMUST00000132595
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl290,547,903 - 90,548,255 (+)Ensembl
GRCm38.p6 Ensembl290,717,559 - 90,717,911 (+)Ensembl
Ensembl Acc Id: ENSMUST00000136739
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl290,520,437 - 90,532,801 (+)Ensembl
GRCm38.p6 Ensembl290,690,093 - 90,702,457 (+)Ensembl
Ensembl Acc Id: ENSMUST00000145669
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl290,519,448 - 90,524,583 (+)Ensembl
GRCm38.p6 Ensembl290,689,104 - 90,694,239 (+)Ensembl
Ensembl Acc Id: ENSMUST00000154036
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl290,515,515 - 90,522,864 (+)Ensembl
GRCm38.p6 Ensembl290,685,171 - 90,692,520 (+)Ensembl
RefSeq Acc Id: NM_001418509   ⟹   NP_001405438
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39290,509,729 - 90,570,217 (+)NCBI
RefSeq Acc Id: NM_001418510   ⟹   NP_001405439
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39290,509,729 - 90,524,591 (+)NCBI
RefSeq Acc Id: NM_001418511   ⟹   NP_001405440
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39290,563,087 - 90,570,217 (+)NCBI
RefSeq Acc Id: NM_021512   ⟹   NP_067487
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39290,507,559 - 90,570,217 (+)NCBI
GRCm38290,677,215 - 90,736,328 (+)NCBI
MGSCv37290,517,372 - 90,576,485 (+)RGD
Celera292,062,066 - 92,121,100 (+)RGD
cM Map2 ENTREZGENE
Sequence:
RefSeq Acc Id: NR_184761
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39290,509,729 - 90,570,217 (+)NCBI
RefSeq Acc Id: XM_006499968   ⟹   XP_006500031
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39290,504,405 - 90,569,671 (+)NCBI
GRCm38290,677,514 - 90,739,327 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030251919   ⟹   XP_030107779
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39290,510,139 - 90,569,671 (+)NCBI
GRCm38290,702,473 - 90,739,327 (+)NCBI
Sequence:
RefSeq Acc Id: NP_067487   ⟸   NM_021512
- Peptide Label: isoform 1
- UniProtKB: Q7TME1 (UniProtKB/Swiss-Prot),   Q6A0A7 (UniProtKB/Swiss-Prot),   Q3U250 (UniProtKB/Swiss-Prot),   Q3TP11 (UniProtKB/Swiss-Prot),   Q3TBI7 (UniProtKB/Swiss-Prot),   Q9CZD9 (UniProtKB/Swiss-Prot),   Q9Z0W3 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006500031   ⟸   XM_006499968
- Peptide Label: isoform X1
- UniProtKB: Q7TME1 (UniProtKB/Swiss-Prot),   Q6A0A7 (UniProtKB/Swiss-Prot),   Q3U250 (UniProtKB/Swiss-Prot),   Q3TP11 (UniProtKB/Swiss-Prot),   Q3TBI7 (UniProtKB/Swiss-Prot),   Q9CZD9 (UniProtKB/Swiss-Prot),   Q9Z0W3 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_030107779   ⟸   XM_030251919
- Peptide Label: isoform X2
Ensembl Acc Id: ENSMUSP00000059289   ⟸   ENSMUST00000057481
RefSeq Acc Id: NP_001405438   ⟸   NM_001418509
- Peptide Label: isoform 2
RefSeq Acc Id: NP_001405439   ⟸   NM_001418510
- Peptide Label: isoform 3
RefSeq Acc Id: NP_001405440   ⟸   NM_001418511
- Peptide Label: isoform 4

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9Z0W3-F1-model_v2 AlphaFold Q9Z0W3 1-1402 view protein structure

Promoters
RGD ID:6831959
Promoter ID:MM_KWN:30400
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Spleen
Transcripts:NM_021512
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36290,517,156 - 90,517,656 (+)MPROMDB
RGD ID:6831986
Promoter ID:MM_KWN:30401
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:UC008KSX.1,   UC008KSY.1,   UC008KSZ.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36290,519,281 - 90,519,781 (+)MPROMDB
RGD ID:6877852
Promoter ID:EPDNEW_M2377
Type:multiple initiation site
Name:Nup160_2
Description:Mus musculus nucleoporin 160 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M2378  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38290,677,231 - 90,677,291EPDNEW
RGD ID:6877938
Promoter ID:EPDNEW_M2378
Type:multiple initiation site
Name:Nup160_1
Description:Mus musculus nucleoporin 160 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M2377  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38290,679,385 - 90,679,445EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1926227 AgrOrtholog
Ensembl Genes ENSMUSG00000051329 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000057481 ENTREZGENE
  ENSMUST00000057481.7 UniProtKB/Swiss-Prot
InterPro Nucleoporin_Nup160 UniProtKB/Swiss-Prot
KEGG Report mmu:59015 UniProtKB/Swiss-Prot
MGD MGI:1926227 ENTREZGENE
NCBI Gene 59015 ENTREZGENE
PANTHER NUCLEAR PORE COMPLEX PROTEIN NUP160 UniProtKB/Swiss-Prot
  PTHR21286 UniProtKB/Swiss-Prot
Pfam Nup160 UniProtKB/Swiss-Prot
PhenoGen Nup160 PhenoGen
UniProt NU160_MOUSE UniProtKB/Swiss-Prot
  Q3TBI7 ENTREZGENE
  Q3TP11 ENTREZGENE
  Q3U250 ENTREZGENE
  Q6A0A7 ENTREZGENE
  Q7TME1 ENTREZGENE
  Q9CZD9 ENTREZGENE
  Q9Z0W3 ENTREZGENE
UniProt Secondary Q3TBI7 UniProtKB/Swiss-Prot
  Q3TP11 UniProtKB/Swiss-Prot
  Q3U250 UniProtKB/Swiss-Prot
  Q6A0A7 UniProtKB/Swiss-Prot
  Q7TME1 UniProtKB/Swiss-Prot
  Q9CZD9 UniProtKB/Swiss-Prot