Gmds (GDP-mannose 4, 6-dehydratase) - Rat Genome Database

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Gene: Gmds (GDP-mannose 4, 6-dehydratase) Mus musculus
Analyze
Symbol: Gmds
Name: GDP-mannose 4, 6-dehydratase
RGD ID: 1322235
MGI Page MGI
Description: Predicted to enable GDP-mannose 4,6-dehydratase activity. Predicted to be involved in 'de novo' GDP-L-fucose biosynthetic process. Is expressed in several structures, including alimentary system; ear; nervous system; respiratory system; and skeleton. Human ortholog(s) of this gene implicated in open-angle glaucoma. Orthologous to human GMDS (GDP-mannose 4,6-dehydratase).
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: BC031788; C87208; GDP-D-mannose dehydratase; GDP-mannose 4,6 dehydratase; GMD; MGC103045; MGC18773
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Related Pseudogenes: Gm15160  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391332,003,566 - 32,522,744 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1332,003,562 - 32,522,723 (-)EnsemblGRCm39 Ensembl
GRCm381331,819,583 - 32,338,762 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1331,819,579 - 32,338,740 (-)EnsemblGRCm38mm10GRCm38
MGSCv371331,911,455 - 32,430,413 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361331,827,051 - 32,346,009 (-)NCBIMGSCv36mm8
Celera1332,029,445 - 32,552,254 (-)NCBICelera
Cytogenetic Map13A3.2NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (ISO)
2-methylcholine  (ISO)
4,4'-sulfonyldiphenol  (ISO)
5-aza-2'-deoxycytidine  (ISO)
7,12-dimethyltetraphene  (EXP)
acetamide  (ISO)
aflatoxin B1  (EXP,ISO)
Aflatoxin B2 alpha  (ISO)
antirheumatic drug  (ISO)
aristolochic acid A  (ISO)
atrazine  (ISO)
benzo[a]pyrene  (EXP,ISO)
benzo[e]pyrene  (ISO)
beta-naphthoflavone  (ISO)
bisphenol A  (EXP,ISO)
carbon nanotube  (EXP)
CGP 52608  (ISO)
chlordecone  (EXP)
cisplatin  (ISO)
cobalt dichloride  (ISO)
copper(II) sulfate  (ISO)
cyclosporin A  (ISO)
dexamethasone  (EXP)
dextran sulfate  (EXP)
diazinon  (ISO)
dichloroacetic acid  (EXP)
dioxygen  (EXP)
dorsomorphin  (ISO)
endosulfan  (ISO)
enzalutamide  (ISO)
enzyme inhibitor  (ISO)
epoxiconazole  (EXP)
ethyl methanesulfonate  (ISO)
formaldehyde  (ISO)
fulvestrant  (ISO)
furan  (ISO)
GDP  (ISO)
genistein  (EXP)
guanosine 5'-[beta,gamma-imido]triphosphate  (ISO)
guanosine 5'-monophosphate  (ISO)
methapyrilene  (ISO)
methyl methanesulfonate  (ISO)
N,N-diethyl-m-toluamide  (ISO)
N-nitrosodiethylamine  (ISO)
N-Nitrosopyrrolidine  (ISO)
NADP zwitterion  (ISO)
NADP(+)  (ISO)
O-methyleugenol  (ISO)
ozone  (EXP)
paracetamol  (ISO)
permethrin  (ISO)
phenobarbital  (EXP)
pirinixic acid  (EXP)
propiconazole  (EXP)
quercetin  (ISO)
SB 431542  (ISO)
silicon dioxide  (ISO)
sodium fluoride  (EXP)
sulforaphane  (ISO)
temozolomide  (ISO)
testosterone  (ISO)
thimerosal  (ISO)
thioacetamide  (ISO)
titanium dioxide  (EXP)
topotecan  (ISO)
Triptolide  (ISO)
valproic acid  (ISO)
vancomycin  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IBA)

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
abnormal bone structure  (IEA)
abnormal cranium morphology  (IEA)
abnormal snout morphology  (IEA)
decreased alpha-beta T cell number  (IEA)
decreased body length  (IEA)
decreased bone mineral content  (IEA)
decreased CD4-positive NK T cell number  (IEA)
decreased CD4-positive, alpha-beta T cell number  (IEA)
decreased CD4-positive, CD25-positive, alpha-beta regulatory T cell number  (IEA)
decreased CD8-positive, alpha-beta T cell number  (IEA)
decreased CD8-positive, naive alpha-beta T cell number  (IEA)
decreased circulating magnesium level  (IEA)
decreased dendritic cell number  (IEA)
decreased effector memory CD8-positive, alpha-beta T cell number  (IEA)
decreased erythrocyte cell number  (IEA)
decreased hematocrit  (IEA)
decreased hemoglobin content  (IEA)
decreased KLRG1+ CD8 alpha-beta T cell number  (IEA)
decreased KLRG1-positive NK cell number  (IEA)
decreased lean body mass  (IEA)
decreased Ly6C-positive mature NK cell number  (IEA)
decreased macrophage cell number  (IEA)
decreased mature NK cell number  (IEA)
decreased memory CD4-positive, CD25-positive, alpha-beta regulatory T cell number  (IEA)
decreased memory-marker CD4-negative NK T cell number  (IEA)
decreased memory-marker CD4-positive NK T cell number  (IEA)
decreased NK cell number  (IEA)
decreased plasmacytoid dendritic cell number  (IEA)
decreased regulatory T cell number  (IEA)
decreased T-helper cell number  (IEA)
decreased transitional stage T2 B cell number  (IEA)
increased CD4-negative NK T cell number  (IEA)
increased CD4-positive, alpha-beta T cell number  (IEA)
increased CD8-positive, alpha-beta T cell number  (IEA)
increased circulating iron level  (IEA)
increased gamma-delta T cell number  (IEA)
increased granulocyte number  (IEA)
increased grip strength  (IEA)
increased immature NK cell number  (IEA)
increased leukocyte cell number  (IEA)
increased Ly6C-positive NK T cell number  (IEA)
increased memory CD4-positive, CD25-positive, alpha-beta regulatory T cell number  (IEA)
increased memory-marker NK cell number  (IEA)
increased monocyte cell number  (IEA)
increased neutrophil cell number  (IEA)
increased NK T cell number  (IEA)
increased total body fat amount  (IEA)
References

References - curated
# Reference Title Reference Citation
1. Common variants near ABCA1, AFAP1 and GMDS confer risk of primary open-angle glaucoma. Gharahkhani P, etal., Nat Genet. 2014 Oct;46(10):1120-1125. doi: 10.1038/ng.3079. Epub 2014 Aug 31.
2. Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Ko MS, etal., Development 2000 Apr;127(8):1737-49.
3. MGDs mouse GO annotations MGD data from the GO Consortium
4. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
5. SMPDB Annotation Import Pipeline Pipeline to import SMPDB annotations from SMPDB into RGD
6. Mouse MP Annotation Import Pipeline RGD automated import pipeline
7. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
8. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:12520002   PMID:14610273   PMID:14681479   PMID:15489334  
PMID:15782199   PMID:16141072   PMID:16141073   PMID:16602821   PMID:21267068   PMID:21677750   PMID:21873635   PMID:32325033   PMID:33898467   PMID:35364055  


Genomics

Comparative Map Data
Gmds
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391332,003,566 - 32,522,744 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1332,003,562 - 32,522,723 (-)EnsemblGRCm39 Ensembl
GRCm381331,819,583 - 32,338,762 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1331,819,579 - 32,338,740 (-)EnsemblGRCm38mm10GRCm38
MGSCv371331,911,455 - 32,430,413 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361331,827,051 - 32,346,009 (-)NCBIMGSCv36mm8
Celera1332,029,445 - 32,552,254 (-)NCBICelera
Cytogenetic Map13A3.2NCBI
GMDS
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3861,623,806 - 2,245,605 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl61,623,806 - 2,245,605 (-)EnsemblGRCh38hg38GRCh38
GRCh3761,624,041 - 2,245,839 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3661,569,040 - 2,190,845 (-)NCBINCBI36Build 36hg18NCBI36
Build 3461,569,040 - 2,190,845NCBI
Celera62,852,269 - 3,473,926 (-)NCBICelera
Cytogenetic Map6p25.3NCBI
HuRef61,493,473 - 2,117,107 (-)NCBIHuRef
CHM1_161,625,952 - 2,247,981 (-)NCBICHM1_1
T2T-CHM13v2.061,486,810 - 2,109,239 (-)NCBIT2T-CHM13v2.0
Gmds
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21732,095,315 - 32,621,975 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1732,095,386 - 32,621,961 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1731,943,309 - 32,469,749 (+)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.01733,547,114 - 34,073,564 (+)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.01731,939,117 - 32,465,571 (+)NCBIRnor_WKY
Rnor_6.01733,408,722 - 33,938,086 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1733,408,722 - 33,938,085 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01735,298,853 - 35,824,292 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41738,461,733 - 39,016,771 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1731,657,264 - 32,181,220 (+)NCBICelera
Cytogenetic Map17p12NCBI
Gmds
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495546511,145,837 - 11,563,352 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495546511,133,513 - 11,562,562 (+)NCBIChiLan1.0ChiLan1.0
GMDS
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1612,234,431 - 12,866,878 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v061,443,129 - 2,071,856 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.161,559,444 - 2,178,324 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl61,556,227 - 2,178,330 (-)Ensemblpanpan1.1panPan2
GMDS
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1352,108,459 - 2,519,902 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl352,151,528 - 2,519,513 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha352,079,228 - 2,654,331 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0352,025,524 - 2,554,965 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1352,000,500 - 2,575,207 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0352,021,716 - 2,596,616 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0353,357,422 - 3,932,361 (-)NCBIUU_Cfam_GSD_1.0
Gmds
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494623,253,265 - 23,867,993 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366332,752,443 - 3,367,443 (-)EnsemblSpeTri2.0
SpeTri2.0NW_0049366332,752,677 - 3,367,408 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GMDS
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl7752,592 - 1,285,550 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.17849,088 - 1,285,563 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.271,047,471 - 1,386,586 (-)NCBISscrofa10.2Sscrofa10.2susScr3
GMDS
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11769,899,089 - 70,523,126 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660441,566,497 - 2,196,283 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Gmds
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475622,504,499 - 23,051,938 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475622,504,483 - 23,051,215 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Gmds
13814 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:339
Count of miRNA genes:282
Interacting mature miRNAs:306
Transcripts:ENSMUST00000041859, ENSMUST00000178294, ENSMUST00000178313, ENSMUST00000179717
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301255Cd4ts6_mCD4 T cell subset 6 (mouse)Not determined1316854534168684Mouse
10449140Eosn2_meosinophil differential 2 (mouse)1322131134221311Mouse
15039338Nmrs34_mNAFLD-associated magnetic resonance shift 34 (mouse)1322131134221311Mouse
1301455Bmd3_mbone mineral density 3 (mouse)Not determined13347761237477820Mouse
10045624Heal24_mwound healing/regeneration (mouse)Not determined13347761237477820Mouse
10045625Heal23_mwound healing/regeneration 23 (mouse)Not determined13347761237477820Mouse
1301367Twq1_mtestis weight QTL 1 (mouse)Not determined13361551237615672Mouse
1301733Heal3_mwound healing/regeneration 3 (mouse)Not determined13368020037680343Mouse
26884393Humsd7_mhumerus midshaft diameter 7, 16 week (mouse)13395000076048119Mouse
1558898Hpi1_mhapatic PMN infiltration 1 (mouse)Not determined13441402553101640Mouse
10402494Igmsc1_mimmunoglobulin M secreting cells 1 (mouse)Not determined131716854544918560Mouse
1301984Pbd2_mpeak bone density 2 (mouse)Not determined131718950838947406Mouse
1301880Hypt_mhypertension (mouse)Not determined131815679252156924Mouse
13463469Gssq1_mglomerulosclerosis severity QTL 1 (mouse)131906090853061050Mouse
12880423V25Dq7_mvitamin D inactive form serum level QTL 7 (mouse)131958398353583983Mouse
1301015Sysbp2_msystolic blood pressure 2 (mouse)Not determined132047761259821605Mouse
4142147Mvwf4_mmodifier of von Willebrand factor 4 (mouse)Not determined20477612112898424Mouse
1357591Tesq1_mtestis weight QTL 1 (mouse)Not determined132061551255720517Mouse
4142009Pregq3_mpregnancy QTL 3 (mouse)Not determined132061551272385189Mouse
10045618Heal17_mwound healing/regeneration 17 (mouse)Not determined132074693954747056Mouse
4142489Ath25_matherosclerosis 25 (mouse)Not determined2583652959836529Mouse
10401111Pgia40_mproteoglycan induced arthritis 40 (mouse)Not determined132791846961918560Mouse
1300710Pcd4ts2_mp-glycoprotein positive CD4 T cell subset 2 (mouse)Not determined132821044262210544Mouse
1357802Vtbt15_mvertebral trabecular bone trait 15 (mouse)Not determined132821737962217515Mouse
10045621Heal21_mwound healing/regeneration 21 (mouse)Not determined132821737962217515Mouse
10755533Chol18_mcholesterol 18 (mouse)133096946764969467Mouse
10755517Chol15_mcholesterol 15 (mouse)133096946764969467Mouse
12738439Twq4_mtestis weight QTL 4 (mouse)133112911065129110Mouse
14696729Kidlq2_mkidney weight, left QTL 2 (mouse)133134473665344736Mouse
14700800Syncq10_msynovial calcification QTL 10 (mouse)133244098333693983Mouse

Markers in Region
C87208  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381331,819,661 - 31,819,868UniSTSGRCm38
MGSCv371331,911,530 - 31,911,737UniSTSGRCm37
Celera1332,029,520 - 32,029,727UniSTS
Cytogenetic Map13A3.2UniSTS
Whitehead/MRC_RH13344.73UniSTS
D13Mit294  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381331,874,204 - 31,874,305UniSTSGRCm38
MGSCv371331,966,073 - 31,966,174UniSTSGRCm37
Celera1332,084,133 - 32,084,234UniSTS
Cytogenetic Map13A3.2UniSTS
cM Map1316.0UniSTS
Whitehead Genetic137.7UniSTS
D13Cwr12  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381332,067,534 - 32,067,711UniSTSGRCm38
MGSCv371332,159,403 - 32,159,580UniSTSGRCm37
Celera1332,278,152 - 32,278,329UniSTS
Cytogenetic Map13A3.2UniSTS
cM Map13 UniSTS
D13Cwr15  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381332,013,512 - 32,013,704UniSTSGRCm38
MGSCv371332,105,381 - 32,105,573UniSTSGRCm37
Celera1332,223,611 - 32,223,803UniSTS
Cytogenetic Map13A3.2UniSTS
cM Map13 UniSTS
D13Cwr16  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381331,958,217 - 31,958,366UniSTSGRCm38
MGSCv371332,050,086 - 32,050,235UniSTSGRCm37
Celera1332,168,514 - 32,168,663UniSTS
Cytogenetic Map13A3.2UniSTS
cM Map13 UniSTS
D13Cwr17  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381331,919,508 - 31,919,662UniSTSGRCm38
MGSCv371332,011,377 - 32,011,531UniSTSGRCm37
Celera1332,129,824 - 32,129,978UniSTS
Cytogenetic Map13A3.2UniSTS
cM Map13 UniSTS
D13Cwr18  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381331,912,182 - 31,912,436UniSTSGRCm38
MGSCv371332,004,051 - 32,004,305UniSTSGRCm37
Celera1332,122,365 - 32,122,619UniSTS
Cytogenetic Map13A3.2UniSTS
cM Map13 UniSTS
D13Cwr19  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381331,911,116 - 31,911,243UniSTSGRCm38
MGSCv371332,002,985 - 32,003,112UniSTSGRCm37
Celera1332,121,299 - 32,121,426UniSTS
Cytogenetic Map13A3.2UniSTS
cM Map13 UniSTS
D13Cwr20  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381331,891,937 - 31,892,154UniSTSGRCm38
MGSCv371331,983,806 - 31,984,023UniSTSGRCm37
Celera1332,101,138 - 32,101,355UniSTS
Cytogenetic Map13A3.2UniSTS
cM Map13 UniSTS
D13Cwr21  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381331,873,413 - 31,873,664UniSTSGRCm38
MGSCv371331,965,282 - 31,965,533UniSTSGRCm37
Celera1332,083,342 - 32,083,593UniSTS
Cytogenetic Map13A3.2UniSTS
cM Map13 UniSTS
D13Cwr22  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381331,856,149 - 31,856,298UniSTSGRCm38
MGSCv371331,948,018 - 31,948,167UniSTSGRCm37
Celera1332,066,083 - 32,066,232UniSTS
Cytogenetic Map13A3.2UniSTS
cM Map13 UniSTS


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000041859   ⟹   ENSMUSP00000036696
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1332,003,562 - 32,522,723 (-)Ensembl
GRCm38.p6 Ensembl1331,819,579 - 32,338,740 (-)Ensembl
RefSeq Acc Id: ENSMUST00000178294
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1332,283,210 - 32,522,568 (-)Ensembl
GRCm38.p6 Ensembl1332,099,227 - 32,338,585 (-)Ensembl
RefSeq Acc Id: ENSMUST00000178313
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1332,341,313 - 32,411,224 (-)Ensembl
GRCm38.p6 Ensembl1332,157,330 - 32,227,241 (-)Ensembl
RefSeq Acc Id: ENSMUST00000179717   ⟹   ENSMUSP00000136223
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1332,409,215 - 32,522,607 (-)Ensembl
GRCm38.p6 Ensembl1332,225,232 - 32,338,624 (-)Ensembl
RefSeq Acc Id: NM_146041   ⟹   NP_666153
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391332,003,569 - 32,522,527 (-)NCBI
GRCm381331,819,586 - 32,338,544 (-)NCBI
MGSCv371331,911,455 - 32,430,413 (-)RGD
Celera1332,029,445 - 32,552,254 (-)RGD
cM Map13 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006516656   ⟹   XP_006516719
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391332,003,566 - 32,522,744 (-)NCBI
GRCm381331,819,583 - 32,338,762 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_666153 (Get FASTA)   NCBI Sequence Viewer  
  XP_006516719 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH31788 (Get FASTA)   NCBI Sequence Viewer  
  AAH93502 (Get FASTA)   NCBI Sequence Viewer  
  EDL32363 (Get FASTA)   NCBI Sequence Viewer  
  Q8K0C9 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_666153   ⟸   NM_146041
- UniProtKB: Q8K0C9 (UniProtKB/Swiss-Prot),   A0A8C6H3L2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006516719   ⟸   XM_006516656
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: ENSMUSP00000136223   ⟸   ENSMUST00000179717
RefSeq Acc Id: ENSMUSP00000036696   ⟸   ENSMUST00000041859
Protein Domains
NAD(P)-binding

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8K0C9-F1-model_v2 AlphaFold Q8K0C9 1-372 view protein structure

Promoters
RGD ID:8680014
Promoter ID:EPDNEW_M18038
Type:initiation region
Name:Gmds_1
Description:Mus musculus GDP-mannose 4, 6-dehydratase , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381332,338,621 - 32,338,681EPDNEW
RGD ID:6823616
Promoter ID:MM_KWN:13722
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:AK043390_A730091E23RIK,   OTTMUST00000001377,   UC007PZR.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361332,430,476 - 32,430,976 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1891112 AgrOrtholog
Ensembl Genes ENSMUSG00000038372 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000036696 ENTREZGENE
  ENSMUSP00000036696.8 UniProtKB/Swiss-Prot
  ENSMUSP00000136223.2 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000041859 ENTREZGENE
  ENSMUST00000041859.9 UniProtKB/Swiss-Prot
  ENSMUST00000179717.2 UniProtKB/TrEMBL
Gene3D-CATH NAD(P)-binding Rossmann-like Domain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  UDP-galactose 4-epimerase, domain 1 UniProtKB/Swiss-Prot
InterPro GDP_Man_deHydtase UniProtKB/Swiss-Prot
  NAD(P)-bd_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  NAD(P)-bd_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:218138 UniProtKB/Swiss-Prot
MGD MGI:1891112 ENTREZGENE
NCBI Gene 218138 ENTREZGENE
PANTHER GDP-MANNOSE 4,6 DEHYDRATASE UniProtKB/Swiss-Prot
  PTHR43715 UniProtKB/Swiss-Prot
Pfam GDP_Man_Dehyd UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Gmds PhenoGen
Superfamily-SCOP SSF51735 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
TIGRFAMs gmd UniProtKB/Swiss-Prot
UniProt A0A8C6H3L2 ENTREZGENE
  GMDS_MOUSE UniProtKB/Swiss-Prot
  J3QMC6_MOUSE UniProtKB/TrEMBL
  Q8K0C9 ENTREZGENE