Hvcn1 (hydrogen voltage-gated channel 1) - Rat Genome Database

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Gene: Hvcn1 (hydrogen voltage-gated channel 1) Mus musculus
Analyze
Symbol: Hvcn1
Name: hydrogen voltage-gated channel 1
RGD ID: 1321893
MGI Page MGI
Description: Enables protein homodimerization activity and voltage-gated proton channel activity. Involved in several processes, including proton transmembrane transport; regulation of reactive oxygen species biosynthetic process; and response to zinc ion. Located in phagocytic vesicle membrane. Orthologous to human HVCN1 (hydrogen voltage gated channel 1).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 0610039P13Rik; AI450555; BT; BTS; HV1; m; mVSOP; voltage sensor domain-only protein; voltage-gated hydrogen channel 1; Vsop; Vsop.
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395122,344,872 - 122,380,360 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5122,344,867 - 122,380,360 (+)EnsemblGRCm39 Ensembl
GRCm385122,206,805 - 122,242,297 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5122,206,804 - 122,242,297 (+)EnsemblGRCm38mm10GRCm38
MGSCv375122,659,746 - 122,692,306 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365122,470,904 - 122,502,890 (+)NCBIMGSCv36mm8
Celera5119,292,209 - 119,324,695 (+)NCBICelera
Cytogenetic Map5FNCBI
cM Map562.23NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2. Neurovascular protection in voltage-gated proton channel Hv1 knock-out rats after ischemic stroke: interaction with Na+ /H+ exchanger-1 antagonism. Li W, etal., Physiol Rep. 2019 Aug;7(13):e14142. doi: 10.14814/phy2.14142.
3. MGDs mouse GO annotations MGD data from the GO Consortium
4. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
5. Mouse MP Annotation Import Pipeline RGD automated import pipeline
6. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:12477932   PMID:12520002   PMID:14610273   PMID:15782199   PMID:16141072   PMID:16141073   PMID:16357211   PMID:16556803   PMID:17948262  
PMID:18583477   PMID:18799693   PMID:19285483   PMID:19372380   PMID:19805063   PMID:19915215   PMID:20018719   PMID:20026664   PMID:20139987   PMID:21677750   PMID:21873635   PMID:22056415  
PMID:22157818   PMID:22367212   PMID:22388960   PMID:22487729   PMID:22569364   PMID:22572846   PMID:23165764   PMID:23231444   PMID:23667254   PMID:23705768   PMID:24140009   PMID:24415791  
PMID:25885273   PMID:25990245   PMID:26173779   PMID:26559003   PMID:27470181   PMID:28628214   PMID:28676401   PMID:28961043   PMID:29550486   PMID:30196744   PMID:30281323   PMID:30967259  
PMID:31769505   PMID:31949049   PMID:32049639   PMID:32303121   PMID:32891159   PMID:33040408   PMID:33081841   PMID:33127821   PMID:33158440   PMID:33336163   PMID:33404063   PMID:33866247  
PMID:34183051   PMID:34547291   PMID:35377790   PMID:35472029   PMID:36660473   PMID:37395288  


Genomics

Comparative Map Data
Hvcn1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395122,344,872 - 122,380,360 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5122,344,867 - 122,380,360 (+)EnsemblGRCm39 Ensembl
GRCm385122,206,805 - 122,242,297 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5122,206,804 - 122,242,297 (+)EnsemblGRCm38mm10GRCm38
MGSCv375122,659,746 - 122,692,306 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365122,470,904 - 122,502,890 (+)NCBIMGSCv36mm8
Celera5119,292,209 - 119,324,695 (+)NCBICelera
Cytogenetic Map5FNCBI
cM Map562.23NCBI
HVCN1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3812110,648,686 - 110,704,952 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl12110,627,841 - 110,704,950 (-)EnsemblGRCh38hg38GRCh38
GRCh3712111,086,491 - 111,127,582 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3612109,570,874 - 109,612,000 (-)NCBINCBI36Build 36hg18NCBI36
Celera12110,713,319 - 110,754,445 (-)NCBICelera
Cytogenetic Map12q24.11NCBI
HuRef12108,104,197 - 108,145,322 (-)NCBIHuRef
CHM1_112111,054,153 - 111,095,269 (-)NCBICHM1_1
T2T-CHM13v2.012110,626,380 - 110,682,642 (-)NCBIT2T-CHM13v2.0
Hvcn1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81240,001,205 - 40,030,671 (-)NCBIGRCr8
mRatBN7.21234,341,673 - 34,370,010 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1234,335,190 - 34,370,141 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.01239,822,814 - 39,851,093 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1239,822,637 - 39,850,567 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01241,702,567 - 41,731,349 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41235,536,954 - 35,556,666 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11235,401,133 - 35,431,692 (-)NCBI
Celera1236,012,998 - 36,041,213 (-)NCBICelera
Cytogenetic Map12q16NCBI
Hvcn1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554827,529,277 - 7,538,363 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554827,529,009 - 7,563,273 (-)NCBIChiLan1.0ChiLan1.0
HVCN1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v210118,708,433 - 118,749,147 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan112118,704,838 - 118,745,536 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v012108,217,516 - 108,258,210 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.112111,611,645 - 111,652,240 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl12111,591,050 - 111,645,632 (-)Ensemblpanpan1.1panPan2
HVCN1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1268,437,032 - 8,474,831 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl268,419,269 - 8,466,523 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha268,600,377 - 8,638,008 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0268,695,233 - 8,733,429 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl268,693,835 - 8,730,452 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1268,653,672 - 8,691,298 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0268,715,797 - 8,753,482 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0268,668,380 - 8,703,287 (-)NCBIUU_Cfam_GSD_1.0
Hvcn1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118155,869,670 - 155,899,754 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365583,579,341 - 3,609,789 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365583,581,409 - 3,609,714 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
HVCN1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1431,989,170 - 32,043,744 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11432,006,837 - 32,044,165 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21433,930,483 - 33,965,967 (-)NCBISscrofa10.2Sscrofa10.2susScr3
HVCN1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.111105,892,024 - 105,932,671 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666037139,183,839 - 139,225,073 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Hvcn1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474721,256,918 - 21,264,984 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474721,237,736 - 21,266,531 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Hvcn1
1045 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1707
Count of miRNA genes:578
Interacting mature miRNAs:698
Transcripts:ENSMUST00000072602, ENSMUST00000100747, ENSMUST00000143560, ENSMUST00000145854
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
27226719Tibw6_mtibia width 6, proximal, 16 week (mouse)572857343139985755Mouse
10412191Bbaa24_mB.burgdorferi-associated arthritis 24 (mouse)Not determined5119945037141700466Mouse
1301457Cfsw2_mcystic fibrosis survival to weaning 2 (mouse)Not determined590561006124561151Mouse
1301974Chab7_mcholesterol absorption 7 (mouse)Not determined595233214129233330Mouse
11528552Scram1_mspinal cord resistance to astrocytoma modifier 1 (mouse)5121455402151758149Mouse
1300827Cora1_mcorrelation in cytokine production 1 (mouse)Not determined5115156883149157015Mouse
25314315Mlh1fc4_mMLH1 foci count 4 (mouse)574460661132528839Mouse
1357662Lprq4_mlipoprotein QTL 4 (mouse)Not determined5114021753129632606Mouse
14746986Manh58_mmandible shape 58 (mouse)5102446283136446283Mouse
4142064Tmc1m4_mTmc1 modifier 4 (mouse)Not determined554500177127001072Mouse
10412239Alpq7_malcohol preference QTL 7 (mouse)Not determined5104705939138705939Mouse
1300993Hycdc_mhypercapnic duty cycle (mouse)Not determined590561006124561151Mouse
9587780Afw16_mabdominal fat weight QTL 16 (mouse)Not determined592830166126830285Mouse
1357644Egrd1_mearly growth rate, direct effect 1 (mouse)Not determined595434580129434786Mouse
12859290Criq2_mCitrobacter rodentium infection QTL 2 (mouse)5101332579135332579Mouse
1300940Actd3_mactivity-distance traveled 3 (mouse)Not determined596320385130320533Mouse
1300659Pcd8ts1_mp-glycoprotein positive CD8 T cell subset 1 (mouse)Not determined597021753131021986Mouse
1301362Prnr1_mprion resistance 1 (mouse)Not determined589418876146787935Mouse
1558774Lith17_mlithogenic gene 17 (mouse)Not determined595465549129465722Mouse
1300913Bwefm_mbody weight females and males day 10 (mouse)Not determined5109439348143439459Mouse
4141081Nidd7k_mNidd7 on KK-A (mouse)Not determined119945037149347326Mouse
10402486Dipa1_mdrug induced psychomotor activation 1 (mouse)Not determined595465549129465722Mouse
1301624Aevm2_mautoimmune extremity vasculitis in MRL mice 2 (mouse)Not determined5101863832135864028Mouse
10043890Trigq4_mtriglyceride QTL 4 (mouse)Not determined5107906299141906412Mouse
4141139Hmtb4_mhemostasis and thrombosis rebleeding time 4 (mouse)Not determined108762509126882944Mouse
11532736Sluc33b_msusceptibility to lung cancer 33b (mouse)5102945037136945196Mouse
4141519Hmtb5_mhemostasis and thrombosis bleeding time 5 (mouse)Not determined99949422126882944Mouse
26884395Humsd2_mhumerus midshaft diameter 2, 10 week (mouse)570057343132528839Mouse
1301858Smdq1_msegregation of mitochondrial DNA QTL 1 (mouse)Not determined597021753131021986Mouse
1301986Bpq4_mblood pressure QTL 4 (mouse)Not determined5121555236151758149Mouse
11049562Lmr24f_mleishmaniasis resistance 24f (mouse)590320962124321041Mouse
1301857Bglq14_mbody growth late QTL 14 (mouse)Not determined5118948964151758149Mouse
10412202Bbaa26_mB.burgdorferi-associated arthritis 26 (mouse)Not determined5104583688138555455Mouse
1301543Hypch_mhypercholesterolemia (mouse)Not determined5109238624139118905Mouse
12904945Tammq2_mtibialis anterior muscle mass QTL 2 (mouse)5100665965134665965Mouse
4142473Chlq11_mcirculating hormone level QTL 11 (mouse)Not determined5107906299141906412Mouse
13464251Ahl21_mage related hearing loss, early onset 21 (mouse)5109167240143167381Mouse
11341716Rvfs3_mRift Valley fever susceptibility 3 (mouse)526441234138455402Mouse
13464244Ahl19_mage related hearing loss, early onset 19 (mouse)595465549129465722Mouse
1301226Bbaa2_mB.burgdorferi-associated arthritis 2 (mouse)Not determined5115156883149157015Mouse
1300968Skts4_mskin tumor susceptibility 4 (mouse)Not determined589418876124238239Mouse
12904959Smmq1_msoleus muscle mass QTL 1 (mouse)5100665965134665965Mouse
10412197Bbaa25_mB.burgdorferi-associated arthritis 25 (mouse)Not determined5109167240143167381Mouse
1301102Cia14_mcollagen induced arthritis 14 (mouse)Not determined5113320385138555455Mouse
13506928Recrq8_mrecombination rate in male meiosis QTL 8 (mouse)574460661132528839Mouse
13464243Ahl20_mage related hearing loss, early onset 20 (mouse)5107906299141906412Mouse

Markers in Region
BE457402  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm385122,239,629 - 122,239,756UniSTSGRCm38
MGSCv375122,689,638 - 122,689,765UniSTSGRCm37
Celera5119,322,027 - 119,322,154UniSTS
Cytogenetic Map5FUniSTS
Whitehead/MRC_RH51487.57UniSTS
AI450555  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm385122,241,957 - 122,242,221UniSTSGRCm38
MGSCv375122,691,966 - 122,692,230UniSTSGRCm37
Celera5119,324,355 - 119,324,619UniSTS
Cytogenetic Map5FUniSTS
Whitehead/MRC_RH51489.11UniSTS
UniSTS:235304  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm385122,235,822 - 122,236,157UniSTSGRCm38
MGSCv375122,685,831 - 122,686,166UniSTSGRCm37
Celera5119,318,212 - 119,318,547UniSTS
Cytogenetic Map5FUniSTS


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001042489 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001359454 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_028752 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006530471 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006530472 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC127266 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK002854 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK154880 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK155123 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK170422 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK178408 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK185570 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK186675 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK191370 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK198720 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK207268 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC021548 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY703352 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CF734112 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CF749152 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466529 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CJ164124 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000072602   ⟹   ENSMUSP00000072401
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5122,347,792 - 122,380,360 (+)Ensembl
GRCm38.p6 Ensembl5122,209,729 - 122,242,297 (+)Ensembl
Ensembl Acc Id: ENSMUST00000100747   ⟹   ENSMUSP00000098312
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5122,348,197 - 122,380,360 (+)Ensembl
GRCm38.p6 Ensembl5122,210,134 - 122,242,297 (+)Ensembl
Ensembl Acc Id: ENSMUST00000143560   ⟹   ENSMUSP00000118013
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5122,347,972 - 122,376,573 (+)Ensembl
GRCm38.p6 Ensembl5122,209,909 - 122,238,510 (+)Ensembl
Ensembl Acc Id: ENSMUST00000145854   ⟹   ENSMUSP00000118151
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5122,344,867 - 122,371,603 (+)Ensembl
GRCm38.p6 Ensembl5122,206,804 - 122,233,540 (+)Ensembl
Ensembl Acc Id: ENSMUST00000196187   ⟹   ENSMUSP00000143483
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5122,348,176 - 122,375,847 (+)Ensembl
GRCm38.p6 Ensembl5122,210,113 - 122,237,784 (+)Ensembl
RefSeq Acc Id: NM_001042489   ⟹   NP_001035954
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395122,347,792 - 122,380,360 (+)NCBI
GRCm385122,209,729 - 122,242,297 (+)NCBI
MGSCv375122,659,746 - 122,692,306 (+)RGD
Celera5119,292,201 - 119,324,695 (+)NCBI
cM Map5 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001359454   ⟹   NP_001346383
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395122,348,202 - 122,380,360 (+)NCBI
GRCm385122,210,139 - 122,242,297 (+)NCBI
Sequence:
RefSeq Acc Id: NM_028752   ⟹   NP_083028
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395122,348,350 - 122,380,360 (+)NCBI
GRCm385122,210,287 - 122,242,297 (+)NCBI
MGSCv375122,659,746 - 122,692,306 (+)RGD
Celera5119,292,201 - 119,324,695 (+)NCBI
cM Map5 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006530471   ⟹   XP_006530534
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395122,358,252 - 122,380,360 (+)NCBI
GRCm385122,220,184 - 122,242,297 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006530472   ⟹   XP_006530535
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395122,344,872 - 122,380,360 (+)NCBI
GRCm385122,206,805 - 122,242,297 (+)NCBI
Sequence:
RefSeq Acc Id: NP_001035954   ⟸   NM_001042489
- UniProtKB: Q9DCE4 (UniProtKB/Swiss-Prot),   Q3U2S8 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_083028   ⟸   NM_028752
- UniProtKB: Q9DCE4 (UniProtKB/Swiss-Prot),   Q3U2S8 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006530535   ⟸   XM_006530472
- Peptide Label: isoform X2
- UniProtKB: Q9DCE4 (UniProtKB/Swiss-Prot),   Q3U2S8 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006530534   ⟸   XM_006530471
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: NP_001346383   ⟸   NM_001359454
- UniProtKB: Q3U2S8 (UniProtKB/Swiss-Prot),   Q9DCE4 (UniProtKB/Swiss-Prot)
Ensembl Acc Id: ENSMUSP00000118013   ⟸   ENSMUST00000143560
Ensembl Acc Id: ENSMUSP00000072401   ⟸   ENSMUST00000072602
Ensembl Acc Id: ENSMUSP00000118151   ⟸   ENSMUST00000145854
Ensembl Acc Id: ENSMUSP00000098312   ⟸   ENSMUST00000100747
Ensembl Acc Id: ENSMUSP00000143483   ⟸   ENSMUST00000196187

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q3U2S8-F1-model_v2 AlphaFold Q3U2S8 1-269 view protein structure

Promoters
RGD ID:6887958
Promoter ID:EPDNEW_M7430
Type:initiation region
Name:Hvcn1_3
Description:Mus musculus hydrogen voltage-gated channel 1 , transcript variant2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M7431  EPDNEW_M7432  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm385122,209,708 - 122,209,768EPDNEW
RGD ID:6887960
Promoter ID:EPDNEW_M7431
Type:initiation region
Name:Hvcn1_2
Description:Mus musculus hydrogen voltage-gated channel 1 , transcript variant2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M7430  EPDNEW_M7432  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm385122,209,883 - 122,209,943EPDNEW
RGD ID:6887962
Promoter ID:EPDNEW_M7432
Type:initiation region
Name:Hvcn1_1
Description:Mus musculus hydrogen voltage-gated channel 1 , transcript variant2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M7430  EPDNEW_M7431  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm385122,210,330 - 122,210,390EPDNEW
RGD ID:6837731
Promoter ID:MM_KWN:43935
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:ES_Cell
Transcripts:OTTMUST00000054085,   OTTMUST00000054149
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv365122,656,476 - 122,656,976 (+)MPROMDB
RGD ID:6837729
Promoter ID:MM_KWN:43936
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_2Hour,   ES_Cell,   Kidney,   Lung,   Spleen
Transcripts:ENSMUST00000100747,   OTTMUST00000054080,   OTTMUST00000054148,   UC008ZKV.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv365122,659,719 - 122,660,219 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1921346 AgrOrtholog
Ensembl Genes ENSMUSG00000064267 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000072602 ENTREZGENE
  ENSMUST00000072602.14 UniProtKB/Swiss-Prot
  ENSMUST00000100747 ENTREZGENE
  ENSMUST00000100747.3 UniProtKB/Swiss-Prot
  ENSMUST00000143560.8 UniProtKB/TrEMBL
  ENSMUST00000145854.8 UniProtKB/TrEMBL
  ENSMUST00000196187.5 UniProtKB/TrEMBL
Gene3D-CATH 1.20.120.350 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  1.20.5.170 UniProtKB/Swiss-Prot
InterPro Hvcn1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ion_trans_dom UniProtKB/Swiss-Prot
  VGPC1_C UniProtKB/Swiss-Prot
  Volt_channel_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:74096 UniProtKB/Swiss-Prot
MGD MGI:1921346 ENTREZGENE
NCBI Gene 74096 ENTREZGENE
PANTHER PTHR46480 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  VOLTAGE-GATED HYDROGEN CHANNEL 1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Ion_trans UniProtKB/Swiss-Prot
  VGPC1_C UniProtKB/Swiss-Prot
PhenoGen Hvcn1 PhenoGen
Superfamily-SCOP Voltage-gated potassium channels UniProtKB/Swiss-Prot
UniProt A0A0G2JGA0_MOUSE UniProtKB/TrEMBL
  D3YZ46_MOUSE UniProtKB/TrEMBL
  D3Z019_MOUSE UniProtKB/TrEMBL
  HVCN1_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
  Q9DCE4 ENTREZGENE
UniProt Secondary Q9DCE4 UniProtKB/Swiss-Prot