ZSCAN10 (zinc finger and SCAN domain containing 10) - Rat Genome Database

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Gene: ZSCAN10 (zinc finger and SCAN domain containing 10) Homo sapiens
Analyze
Symbol: ZSCAN10
Name: zinc finger and SCAN domain containing 10
RGD ID: 1321829
HGNC Page HGNC:12997
Description: Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in negative regulation of DNA-templated transcription and regulation of transcription by RNA polymerase II. Predicted to be located in nucleoplasm. Predicted to be active in nucleus.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: FLJ14549; OFNS; ZFP206; zinc finger and SCAN domain-containing protein 10; zinc finger protein 206; ZNF206
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38163,088,890 - 3,099,294 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl163,088,890 - 3,099,295 (-)EnsemblGRCh38hg38GRCh38
GRCh37163,138,891 - 3,149,295 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36163,078,896 - 3,082,862 (-)NCBINCBI36Build 36hg18NCBI36
Build 34163,078,895 - 3,082,862NCBI
Celera163,344,365 - 3,348,331 (-)NCBICelera
Cytogenetic Map16p13.3NCBI
HuRef163,110,419 - 3,114,385 (-)NCBIHuRef
CHM1_1163,138,769 - 3,142,735 (-)NCBICHM1_1
T2T-CHM13v2.0163,115,369 - 3,125,775 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleoplasm  (TAS)
nucleus  (IBA,IEA,ISS)

Phenotype Annotations     Click to see Annotation Detail View

Human Phenotype
References

References - curated
# Reference Title Reference Citation
1. GOAs Human GO annotations GOA_HUMAN data from the GO Consortium
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889549   PMID:9653642   PMID:12477932   PMID:14702039   PMID:15146197   PMID:16344560   PMID:21873635   PMID:22011711   PMID:22911660   PMID:27634302   PMID:28846095   PMID:29511261  
PMID:32296183   PMID:38386308  


Genomics

Comparative Map Data
ZSCAN10
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38163,088,890 - 3,099,294 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl163,088,890 - 3,099,295 (-)EnsemblGRCh38hg38GRCh38
GRCh37163,138,891 - 3,149,295 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36163,078,896 - 3,082,862 (-)NCBINCBI36Build 36hg18NCBI36
Build 34163,078,895 - 3,082,862NCBI
Celera163,344,365 - 3,348,331 (-)NCBICelera
Cytogenetic Map16p13.3NCBI
HuRef163,110,419 - 3,114,385 (-)NCBIHuRef
CHM1_1163,138,769 - 3,142,735 (-)NCBICHM1_1
T2T-CHM13v2.0163,115,369 - 3,125,775 (-)NCBIT2T-CHM13v2.0
Zscan10
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391723,819,800 - 23,829,993 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1723,819,830 - 23,829,993 (+)EnsemblGRCm39 Ensembl
GRCm381723,600,826 - 23,611,019 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1723,600,856 - 23,611,019 (+)EnsemblGRCm38mm10GRCm38
MGSCv371723,737,823 - 23,747,986 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361723,328,478 - 23,338,634 (+)NCBIMGSCv36mm8
Celera1724,106,465 - 24,116,679 (+)NCBICelera
Cytogenetic Map17A3.3NCBI
cM Map1711.79NCBI
Zscan10
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81013,140,929 - 13,150,897 (+)NCBIGRCr8
mRatBN7.21012,636,302 - 12,646,275 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1012,636,302 - 12,646,275 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1017,379,685 - 17,389,666 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01016,868,486 - 16,878,467 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01012,369,050 - 12,379,024 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01012,929,471 - 12,939,439 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1012,929,471 - 12,939,435 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01012,750,768 - 12,760,736 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41012,867,725 - 12,877,689 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11012,868,546 - 12,877,529 (+)NCBI
Celera1012,332,764 - 12,342,728 (+)NCBICelera
Cytogenetic Map10q12NCBI
Zscan10
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495544214,270,056 - 14,280,877 (+)NCBIChiLan1.0ChiLan1.0
ZSCAN10
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2183,633,405 - 3,643,829 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1167,418,253 - 7,428,680 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0162,030,450 - 2,040,879 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1163,210,420 - 3,220,380 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl163,210,420 - 3,220,381 (-)Ensemblpanpan1.1panPan2
ZSCAN10
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1638,111,436 - 38,115,722 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl638,111,507 - 38,115,367 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha639,353,019 - 39,357,680 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0638,422,895 - 38,427,203 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl638,423,023 - 38,426,881 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1638,109,105 - 38,113,762 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0638,081,503 - 38,085,810 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0638,557,210 - 38,562,014 (+)NCBIUU_Cfam_GSD_1.0
Zscan10
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344105,602,247 - 105,612,118 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366941,100,190 - 1,107,010 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366941,100,190 - 1,107,114 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZSCAN10
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl339,113,402 - 39,118,779 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1339,113,307 - 39,119,033 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2340,581,662 - 40,587,752 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ZSCAN10
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.152,813,067 - 2,836,732 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl52,813,268 - 2,817,107 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606828,006,358 - 28,014,514 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Zscan10
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624824814,537 - 819,806 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624824814,332 - 820,032 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in ZSCAN10
88 total Variants

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 16p13.3(chr16:2326840-3487106)x3 copy number gain See cases [RCV000052394] Chr16:2326840..3487106 [GRCh38]
Chr16:2376841..3537106 [GRCh37]
Chr16:2316842..3477107 [NCBI36]
Chr16:16p13.3		 pathogenic
GRCh38/hg38 16p13.3(chr16:2717952-4041020)x3 copy number gain See cases [RCV000052395] Chr16:2717952..4041020 [GRCh38]
Chr16:2767953..4091021 [GRCh37]
Chr16:2707954..4031022 [NCBI36]
Chr16:16p13.3		 pathogenic
GRCh38/hg38 16p13.3-13.13(chr16:23141-11296695)x3 copy number gain See cases [RCV000052367] Chr16:23141..11296695 [GRCh38]
Chr16:73141..11390552 [GRCh37]
Chr16:13141..11298053 [NCBI36]
Chr16:16p13.3-13.13		 pathogenic
GRCh38/hg38 16p13.3(chr16:46766-3214623)x3 copy number gain See cases [RCV000052370] Chr16:46766..3214623 [GRCh38]
Chr16:96766..3264623 [GRCh37]
Chr16:36766..3204624 [NCBI36]
Chr16:16p13.3		 pathogenic
GRCh38/hg38 16p13.3(chr16:2494804-3246579)x1 copy number loss See cases [RCV000053269] Chr16:2494804..3246579 [GRCh38]
Chr16:2544805..3296579 [GRCh37]
Chr16:2484806..3236580 [NCBI36]
Chr16:16p13.3		 pathogenic
GRCh38/hg38 16p13.3(chr16:2850734-7110697)x1 copy number loss See cases [RCV000053270] Chr16:2850734..7110697 [GRCh38]
Chr16:2900735..7160698 [GRCh37]
Chr16:2840736..7100699 [NCBI36]
Chr16:16p13.3		 pathogenic
GRCh38/hg38 16p13.3-13.13(chr16:46766-11525516)x3 copy number gain See cases [RCV000133780] Chr16:46766..11525516 [GRCh38]
Chr16:96766..11619372 [GRCh37]
Chr16:36766..11526873 [NCBI36]
Chr16:16p13.3-13.13		 pathogenic
GRCh38/hg38 16p13.3(chr16:46766-4247185)x3 copy number gain See cases [RCV000136687] Chr16:46766..4247185 [GRCh38]
Chr16:96766..4297186 [GRCh37]
Chr16:36766..4237187 [NCBI36]
Chr16:16p13.3		 pathogenic
GRCh38/hg38 16p13.3-13.12(chr16:43732-13326806)x3 copy number gain See cases [RCV000139166] Chr16:43732..13326806 [GRCh38]
Chr16:93732..13420663 [GRCh37]
Chr16:33732..13328164 [NCBI36]
Chr16:16p13.3-13.12		 pathogenic
GRCh38/hg38 16p13.3(chr16:3061267-3666094)x3 copy number gain See cases [RCV000139806] Chr16:3061267..3666094 [GRCh38]
Chr16:3111268..3716095 [GRCh37]
Chr16:3051269..3656096 [NCBI36]
Chr16:16p13.3		 uncertain significance
GRCh38/hg38 16p13.3-13.11(chr16:666662-15743104)x3 copy number gain See cases [RCV000143710] Chr16:666662..15743104 [GRCh38]
Chr16:716662..15836961 [GRCh37]
Chr16:656663..15744462 [NCBI36]
Chr16:16p13.3-13.11		 pathogenic
GRCh37/hg19 16p13.3-11.2(chr16:102839-28327676)x3 copy number gain See cases [RCV000203445] Chr16:102839..28327676 [GRCh37]
Chr16:16p13.3-11.2		 pathogenic
GRCh37/hg19 16p13.3-11.2(chr16:1279324-31926800)x3 copy number gain Breast ductal adenocarcinoma [RCV000207053] Chr16:1279324..31926800 [GRCh37]
Chr16:16p13.3-11.2		 uncertain significance
GRCh37/hg19 16p13.3-12.3(chr16:1274615-19073133)x3 copy number gain Breast ductal adenocarcinoma [RCV000207326] Chr16:1274615..19073133 [GRCh37]
Chr16:16p13.3-12.3		 uncertain significance
GRCh37/hg19 16p13.3(chr16:3104050-3722491)x3 copy number gain See cases [RCV000240036] Chr16:3104050..3722491 [GRCh37]
Chr16:16p13.3		 uncertain significance
GRCh37/hg19 16p13.3(chr16:2867891-3942436)x3 copy number gain See cases [RCV000240318] Chr16:2867891..3942436 [GRCh37]
Chr16:16p13.3		 pathogenic
GRCh37/hg19 16p13.3(chr16:2980929-3398023)x3 copy number gain See cases [RCV000446345] Chr16:2980929..3398023 [GRCh37]
Chr16:16p13.3		 uncertain significance
GRCh37/hg19 16p13.3-q24.3(chr16:69193-90274381)x3 copy number gain See cases [RCV000446684] Chr16:69193..90274381 [GRCh37]
Chr16:16p13.3-q24.3		 pathogenic
GRCh37/hg19 16p13.3-13.2(chr16:78801-9169448) copy number gain See cases [RCV000446555] Chr16:78801..9169448 [GRCh37]
Chr16:16p13.3-13.2		 pathogenic
GRCh37/hg19 16p13.3(chr16:97133-5122974)x3 copy number gain See cases [RCV000445663] Chr16:97133..5122974 [GRCh37]
Chr16:16p13.3		 pathogenic
maternal UPD(16p) complex Hemimegalencephaly [RCV000494707] Chr16:1280042..33710558 [GRCh37]
Chr16:16p13.3-11.2		 pathogenic
GRCh37/hg19 16p13.3-q24.3(chr16:85881-90155062) copy number gain See cases [RCV000511296] Chr16:85881..90155062 [GRCh37]
Chr16:16p13.3-q24.3		 pathogenic
GRCh37/hg19 16p13.3-q24.3(chr16:85881-90155062)x3 copy number gain See cases [RCV000512138] Chr16:85881..90155062 [GRCh37]
Chr16:16p13.3-q24.3		 pathogenic
NM_032805.3(ZSCAN10):c.413C>T (p.Ala138Val) single nucleotide variant not specified [RCV004294474] Chr16:3092300 [GRCh38]
Chr16:3142301 [GRCh37]
Chr16:16p13.3		 uncertain significance
GRCh37/hg19 16p13.3-13.2(chr16:85880-9883129)x3 copy number gain See cases [RCV000510698] Chr16:85880..9883129 [GRCh37]
Chr16:16p13.3-13.2		 pathogenic
GRCh37/hg19 16p13.3-12.3(chr16:85880-19806921)x3 copy number gain See cases [RCV000512194] Chr16:85880..19806921 [GRCh37]
Chr16:16p13.3-12.3		 pathogenic
GRCh37/hg19 16p13.3-12.2(chr16:85880-22442007)x3 copy number gain See cases [RCV000511360] Chr16:85880..22442007 [GRCh37]
Chr16:16p13.3-12.2		 pathogenic
GRCh37/hg19 16p13.3(chr16:2891391-4440397)x3 copy number gain See cases [RCV000511502] Chr16:2891391..4440397 [GRCh37]
Chr16:16p13.3		 uncertain significance
GRCh37/hg19 16p13.3(chr16:2606710-3382546)x3 copy number gain See cases [RCV000512346] Chr16:2606710..3382546 [GRCh37]
Chr16:16p13.3		 uncertain significance
NM_032805.3(ZSCAN10):c.1531G>A (p.Gly511Ser) single nucleotide variant not specified [RCV004302544] Chr16:3089903 [GRCh38]
Chr16:3139904 [GRCh37]
Chr16:16p13.3		 uncertain significance
GRCh37/hg19 16p13.3(chr16:1505184-4415346)x3 copy number gain not provided [RCV000683745] Chr16:1505184..4415346 [GRCh37]
Chr16:16p13.3		 pathogenic
GRCh37/hg19 16p13.3(chr16:2651354-4460114)x3 copy number gain not provided [RCV000683747] Chr16:2651354..4460114 [GRCh37]
Chr16:16p13.3		 pathogenic
GRCh37/hg19 16p13.3(chr16:85880-3216551)x3 copy number gain not provided [RCV000683742] Chr16:85880..3216551 [GRCh37]
Chr16:16p13.3		 pathogenic
GRCh37/hg19 16p13.3-13.13(chr16:85880-11209288)x3 copy number gain not provided [RCV000683743] Chr16:85880..11209288 [GRCh37]
Chr16:16p13.3-13.13		 pathogenic
GRCh37/hg19 16p13.3-q24.3(chr16:88165-90163275)x3 copy number gain not provided [RCV000738917] Chr16:88165..90163275 [GRCh37]
Chr16:16p13.3-q24.3		 pathogenic
GRCh37/hg19 16p13.3-q24.3(chr16:88165-90274695)x3 copy number gain not provided [RCV000738918] Chr16:88165..90274695 [GRCh37]
Chr16:16p13.3-q24.3		 pathogenic
GRCh37/hg19 16p13.3-q24.3(chr16:61451-90294632)x3 copy number gain not provided [RCV000738915] Chr16:61451..90294632 [GRCh37]
Chr16:16p13.3-q24.3		 pathogenic
GRCh37/hg19 16p13.3(chr16:3139190-3194830)x3 copy number gain not provided [RCV000751544] Chr16:3139190..3194830 [GRCh37]
Chr16:16p13.3		 benign
NM_032805.3(ZSCAN10):c.2088T>C (p.Gly696=) single nucleotide variant not provided [RCV000896994] Chr16:3089346 [GRCh38]
Chr16:3139347 [GRCh37]
Chr16:16p13.3		 likely benign
GRCh37/hg19 16p13.3(chr16:3100528-3305985)x3 copy number gain not provided [RCV000762721] Chr16:3100528..3305985 [GRCh37]
Chr16:16p13.3		 likely benign
NM_032805.3(ZSCAN10):c.920C>T (p.Ser307Leu) single nucleotide variant not specified [RCV004295402] Chr16:3090514 [GRCh38]
Chr16:3140515 [GRCh37]
Chr16:16p13.3		 uncertain significance
NM_032805.3(ZSCAN10):c.768G>A (p.Ala256=) single nucleotide variant not provided [RCV000950247] Chr16:3091559 [GRCh38]
Chr16:3141560 [GRCh37]
Chr16:16p13.3		 benign|likely benign
NM_032805.3(ZSCAN10):c.1436C>A (p.Ser479Tyr) single nucleotide variant not provided [RCV000963798] Chr16:3089998 [GRCh38]
Chr16:3139999 [GRCh37]
Chr16:16p13.3		 benign|likely benign
NM_032805.3(ZSCAN10):c.120C>G (p.Pro40=) single nucleotide variant not provided [RCV000960071] Chr16:3092818 [GRCh38]
Chr16:3142819 [GRCh37]
Chr16:16p13.3		 benign
NM_032805.3(ZSCAN10):c.28G>C (p.Val10Leu) single nucleotide variant not provided [RCV000947665] Chr16:3092910 [GRCh38]
Chr16:3142911 [GRCh37]
Chr16:16p13.3		 benign
NM_032805.3(ZSCAN10):c.1556G>A (p.Arg519Gln) single nucleotide variant not specified [RCV004288288] Chr16:3089878 [GRCh38]
Chr16:3139879 [GRCh37]
Chr16:16p13.3		 uncertain significance
GRCh37/hg19 16p13.3(chr16:109978-4316797) copy number gain Chromosome 16p13.3 duplication syndrome [RCV000767731] Chr16:109978..4316797 [GRCh37]
Chr16:16p13.3		 pathogenic
GRCh37/hg19 16p13.3(chr16:3112024-3738078)x3 copy number gain not provided [RCV000849936] Chr16:3112024..3738078 [GRCh37]
Chr16:16p13.3		 uncertain significance
NM_032805.3(ZSCAN10):c.834G>A (p.Glu278=) single nucleotide variant not provided [RCV000955127] Chr16:3090600 [GRCh38]
Chr16:3140601 [GRCh37]
Chr16:16p13.3		 benign
NM_032805.3(ZSCAN10):c.270G>A (p.Glu90=) single nucleotide variant not provided [RCV000961023] Chr16:3092668 [GRCh38]
Chr16:3142669 [GRCh37]
Chr16:16p13.3		 benign
GRCh37/hg19 16p13.3(chr16:2651354-4614965)x3 copy number gain not provided [RCV001006745] Chr16:2651354..4614965 [GRCh37]
Chr16:16p13.3		 pathogenic
GRCh37/hg19 16p13.3(chr16:84485-5251013)x3 copy number gain not provided [RCV001537890] Chr16:84485..5251013 [GRCh37]
Chr16:16p13.3		 pathogenic
GRCh37/hg19 16p13.3(chr16:85880-5249457)x3 copy number gain not provided [RCV001259749] Chr16:85880..5249457 [GRCh37]
Chr16:16p13.3		 pathogenic
GRCh37/hg19 16p13.3-11.2(chr16:2959279-30190593)x3 copy number gain See cases [RCV001263169] Chr16:2959279..30190593 [GRCh37]
Chr16:16p13.3-11.2		 pathogenic|likely pathogenic
NC_000016.9:g.(?_256302)_(5971108_?)dup duplication Familial Mediterranean fever [RCV001877532]|Fanconi anemia [RCV001877533]|not provided [RCV001877531] Chr16:256302..5971108 [GRCh37]
Chr16:16p13.3		 uncertain significance
NC_000016.9:g.(?_256302)_(4852572_?)dup duplication Epilepsy [RCV003113403]|Idiopathic generalized epilepsy [RCV003109446]|Saldino-Mainzer syndrome [RCV003113404] Chr16:256302..4852572 [GRCh37]
Chr16:16p13.3		 uncertain significance
NM_032805.3(ZSCAN10):c.1250C>A (p.Ser417Ter) single nucleotide variant Otofacial neurodevelopmental syndrome [RCV004690268]|Sensorineural hearing loss disorder [RCV002286872] Chr16:3090184 [GRCh38]
Chr16:3140185 [GRCh37]
Chr16:16p13.3		 pathogenic
NM_032805.3(ZSCAN10):c.2050del (p.His684fs) deletion Otofacial neurodevelopmental syndrome [RCV004690267]|Sensorineural hearing loss disorder [RCV002286871] Chr16:3089384 [GRCh38]
Chr16:3139385 [GRCh37]
Chr16:16p13.3		 pathogenic
GRCh37/hg19 16p13.3(chr16:111043-6627459)x3 copy number gain See cases [RCV002292215] Chr16:111043..6627459 [GRCh37]
Chr16:16p13.3		 pathogenic
NM_032805.3(ZSCAN10):c.1817A>C (p.His606Pro) single nucleotide variant not specified [RCV004325669] Chr16:3089617 [GRCh38]
Chr16:3139618 [GRCh37]
Chr16:16p13.3		 uncertain significance
NM_032805.3(ZSCAN10):c.176G>A (p.Arg59Gln) single nucleotide variant not specified [RCV004170256] Chr16:3092762 [GRCh38]
Chr16:3142763 [GRCh37]
Chr16:16p13.3		 uncertain significance
NM_032805.3(ZSCAN10):c.1033T>A (p.Leu345Met) single nucleotide variant not specified [RCV004130886] Chr16:3090401 [GRCh38]
Chr16:3140402 [GRCh37]
Chr16:16p13.3		 uncertain significance
NM_032805.3(ZSCAN10):c.2242G>C (p.Gly748Arg) single nucleotide variant not specified [RCV004195009] Chr16:3089192 [GRCh38]
Chr16:3139193 [GRCh37]
Chr16:16p13.3		 uncertain significance
NM_032805.3(ZSCAN10):c.197G>A (p.Arg66Gln) single nucleotide variant not specified [RCV004130885] Chr16:3092741 [GRCh38]
Chr16:3142742 [GRCh37]
Chr16:16p13.3		 uncertain significance
NM_032805.3(ZSCAN10):c.2106C>A (p.Asn702Lys) single nucleotide variant not specified [RCV004230000] Chr16:3089328 [GRCh38]
Chr16:3139329 [GRCh37]
Chr16:16p13.3		 uncertain significance
NM_032805.3(ZSCAN10):c.533C>T (p.Ser178Leu) single nucleotide variant not specified [RCV004195158] Chr16:3092180 [GRCh38]
Chr16:3142181 [GRCh37]
Chr16:16p13.3		 uncertain significance
NM_032805.3(ZSCAN10):c.976A>T (p.Ser326Cys) single nucleotide variant not specified [RCV004136704] Chr16:3090458 [GRCh38]
Chr16:3140459 [GRCh37]
Chr16:16p13.3		 uncertain significance
NM_032805.3(ZSCAN10):c.839A>G (p.Lys280Arg) single nucleotide variant not specified [RCV004099785] Chr16:3090595 [GRCh38]
Chr16:3140596 [GRCh37]
Chr16:16p13.3		 uncertain significance
NM_032805.3(ZSCAN10):c.439G>A (p.Val147Ile) single nucleotide variant not specified [RCV004220332] Chr16:3092274 [GRCh38]
Chr16:3142275 [GRCh37]
Chr16:16p13.3		 likely benign
NM_032805.3(ZSCAN10):c.1458G>T (p.Gln486His) single nucleotide variant not specified [RCV004169012] Chr16:3089976 [GRCh38]
Chr16:3139977 [GRCh37]
Chr16:16p13.3		 uncertain significance
NM_032805.3(ZSCAN10):c.1670G>A (p.Arg557His) single nucleotide variant not specified [RCV004204790] Chr16:3089764 [GRCh38]
Chr16:3139765 [GRCh37]
Chr16:16p13.3		 uncertain significance
NM_032805.3(ZSCAN10):c.1567G>A (p.Val523Met) single nucleotide variant not specified [RCV004140808] Chr16:3089867 [GRCh38]
Chr16:3139868 [GRCh37]
Chr16:16p13.3		 uncertain significance
NM_032805.3(ZSCAN10):c.1883A>G (p.His628Arg) single nucleotide variant not specified [RCV004126206] Chr16:3089551 [GRCh38]
Chr16:3139552 [GRCh37]
Chr16:16p13.3		 uncertain significance
NM_032805.3(ZSCAN10):c.1090G>A (p.Ala364Thr) single nucleotide variant not specified [RCV004240997] Chr16:3090344 [GRCh38]
Chr16:3140345 [GRCh37]
Chr16:16p13.3		 uncertain significance
NM_032805.3(ZSCAN10):c.688C>T (p.Pro230Ser) single nucleotide variant not specified [RCV004217588] Chr16:3091805 [GRCh38]
Chr16:3141806 [GRCh37]
Chr16:16p13.3		 uncertain significance
NM_032805.3(ZSCAN10):c.1001T>C (p.Val334Ala) single nucleotide variant not specified [RCV004239430] Chr16:3090433 [GRCh38]
Chr16:3140434 [GRCh37]
Chr16:16p13.3		 uncertain significance
NM_032805.3(ZSCAN10):c.371G>A (p.Arg124Gln) single nucleotide variant not specified [RCV004193258] Chr16:3092567 [GRCh38]
Chr16:3142568 [GRCh37]
Chr16:16p13.3		 uncertain significance
NM_032805.3(ZSCAN10):c.485G>A (p.Ser162Asn) single nucleotide variant not specified [RCV004120088] Chr16:3092228 [GRCh38]
Chr16:3142229 [GRCh37]
Chr16:16p13.3		 uncertain significance
NM_032805.3(ZSCAN10):c.1268T>A (p.Leu423Gln) single nucleotide variant not specified [RCV004099173] Chr16:3090166 [GRCh38]
Chr16:3140167 [GRCh37]
Chr16:16p13.3		 uncertain significance
NM_032805.3(ZSCAN10):c.685T>C (p.Trp229Arg) single nucleotide variant not specified [RCV004119135] Chr16:3091808 [GRCh38]
Chr16:3141809 [GRCh37]
Chr16:16p13.3		 uncertain significance
NM_032805.3(ZSCAN10):c.2045G>A (p.Arg682His) single nucleotide variant not specified [RCV004173640] Chr16:3089389 [GRCh38]
Chr16:3139390 [GRCh37]
Chr16:16p13.3		 uncertain significance
NM_032805.3(ZSCAN10):c.1403C>T (p.Ala468Val) single nucleotide variant not specified [RCV004152863] Chr16:3090031 [GRCh38]
Chr16:3140032 [GRCh37]
Chr16:16p13.3		 uncertain significance
NM_032805.3(ZSCAN10):c.929G>A (p.Arg310Gln) single nucleotide variant not specified [RCV004078177] Chr16:3090505 [GRCh38]
Chr16:3140506 [GRCh37]
Chr16:16p13.3		 likely benign
NM_032805.3(ZSCAN10):c.841G>A (p.Gly281Arg) single nucleotide variant not specified [RCV004216740] Chr16:3090593 [GRCh38]
Chr16:3140594 [GRCh37]
Chr16:16p13.3		 uncertain significance
NM_032805.3(ZSCAN10):c.1631A>C (p.His544Pro) single nucleotide variant not specified [RCV004314818] Chr16:3089803 [GRCh38]
Chr16:3139804 [GRCh37]
Chr16:16p13.3		 uncertain significance
NM_032805.3(ZSCAN10):c.2195G>C (p.Ser732Thr) single nucleotide variant not specified [RCV004270195] Chr16:3089239 [GRCh38]
Chr16:3139240 [GRCh37]
Chr16:16p13.3		 uncertain significance
NM_032805.3(ZSCAN10):c.557C>T (p.Pro186Leu) single nucleotide variant not specified [RCV004286994] Chr16:3092156 [GRCh38]
Chr16:3142157 [GRCh37]
Chr16:16p13.3		 uncertain significance
NM_032805.3(ZSCAN10):c.1923G>C (p.Glu641Asp) single nucleotide variant not specified [RCV004249476] Chr16:3089511 [GRCh38]
Chr16:3139512 [GRCh37]
Chr16:16p13.3		 uncertain significance
NM_032805.3(ZSCAN10):c.2146G>C (p.Gly716Arg) single nucleotide variant not specified [RCV004251187] Chr16:3089288 [GRCh38]
Chr16:3139289 [GRCh37]
Chr16:16p13.3		 uncertain significance
NM_032805.3(ZSCAN10):c.895G>C (p.Val299Leu) single nucleotide variant not specified [RCV004258561] Chr16:3090539 [GRCh38]
Chr16:3140540 [GRCh37]
Chr16:16p13.3		 uncertain significance
NM_032805.3(ZSCAN10):c.190C>T (p.Arg64Trp) single nucleotide variant not specified [RCV004365909] Chr16:3092748 [GRCh38]
Chr16:3142749 [GRCh37]
Chr16:16p13.3		 uncertain significance
NM_032805.3(ZSCAN10):c.2164C>A (p.Pro722Thr) single nucleotide variant not specified [RCV004363837] Chr16:3089270 [GRCh38]
Chr16:3139271 [GRCh37]
Chr16:16p13.3		 uncertain significance
GRCh37/hg19 16p13.3(chr16:2606711-3935836)x3 copy number gain not provided [RCV003485082] Chr16:2606711..3935836 [GRCh37]
Chr16:16p13.3		 pathogenic
GRCh37/hg19 16p13.3(chr16:2643569-3716657)x3 copy number gain not provided [RCV003485084] Chr16:2643569..3716657 [GRCh37]
Chr16:16p13.3		 uncertain significance
NM_032805.3(ZSCAN10):c.2245G>T (p.Ala749Ser) single nucleotide variant not provided [RCV003417602] Chr16:3089189 [GRCh38]
Chr16:3139190 [GRCh37]
Chr16:16p13.3		 likely benign
NM_032805.3(ZSCAN10):c.2151G>A (p.Gln717=) single nucleotide variant not provided [RCV003417603] Chr16:3089283 [GRCh38]
Chr16:3139284 [GRCh37]
Chr16:16p13.3		 likely benign
GRCh37/hg19 16p13.3(chr16:3112024-3506789)x3 copy number gain not specified [RCV003987138] Chr16:3112024..3506789 [GRCh37]
Chr16:16p13.3		 uncertain significance
NM_032805.3(ZSCAN10):c.1234C>T (p.Arg412Cys) single nucleotide variant not specified [RCV004487654] Chr16:3090200 [GRCh38]
Chr16:3140201 [GRCh37]
Chr16:16p13.3		 uncertain significance
NM_032805.3(ZSCAN10):c.307C>T (p.Arg103Cys) single nucleotide variant not specified [RCV004487656] Chr16:3092631 [GRCh38]
Chr16:3142632 [GRCh37]
Chr16:16p13.3		 uncertain significance
NM_032805.3(ZSCAN10):c.1595G>A (p.Arg532Gln) single nucleotide variant not specified [RCV004487657] Chr16:3089839 [GRCh38]
Chr16:3139840 [GRCh37]
Chr16:16p13.3		 uncertain significance
NM_032805.3(ZSCAN10):c.1810C>T (p.Arg604Trp) single nucleotide variant not specified [RCV004487659] Chr16:3089624 [GRCh38]
Chr16:3139625 [GRCh37]
Chr16:16p13.3		 uncertain significance
NM_032805.3(ZSCAN10):c.581C>T (p.Pro194Leu) single nucleotide variant not specified [RCV004487664] Chr16:3092132 [GRCh38]
Chr16:3142133 [GRCh37]
Chr16:16p13.3		 likely benign
NM_032805.3(ZSCAN10):c.689C>T (p.Pro230Leu) single nucleotide variant not specified [RCV004487665] Chr16:3091804 [GRCh38]
Chr16:3141805 [GRCh37]
Chr16:16p13.3		 likely benign
NM_032805.3(ZSCAN10):c.757G>C (p.Glu253Gln) single nucleotide variant not specified [RCV004487667] Chr16:3091570 [GRCh38]
Chr16:3141571 [GRCh37]
Chr16:16p13.3		 uncertain significance
NM_032805.3(ZSCAN10):c.803C>A (p.Thr268Asn) single nucleotide variant not specified [RCV004487669] Chr16:3090631 [GRCh38]
Chr16:3140632 [GRCh37]
Chr16:16p13.3		 uncertain significance
NM_032805.3(ZSCAN10):c.862A>G (p.Ile288Val) single nucleotide variant not specified [RCV004487670] Chr16:3090572 [GRCh38]
Chr16:3140573 [GRCh37]
Chr16:16p13.3		 likely benign
NM_032805.3(ZSCAN10):c.179C>T (p.Ala60Val) single nucleotide variant not specified [RCV004487658] Chr16:3092759 [GRCh38]
Chr16:3142760 [GRCh37]
Chr16:16p13.3		 uncertain significance
NM_032805.3(ZSCAN10):c.2168C>T (p.Pro723Leu) single nucleotide variant not specified [RCV004487661] Chr16:3089266 [GRCh38]
Chr16:3139267 [GRCh37]
Chr16:16p13.3		 uncertain significance
NM_032805.3(ZSCAN10):c.1501G>T (p.Asp501Tyr) single nucleotide variant not specified [RCV004487655] Chr16:3089933 [GRCh38]
Chr16:3139934 [GRCh37]
Chr16:16p13.3		 uncertain significance
NM_032805.3(ZSCAN10):c.704G>A (p.Arg235Gln) single nucleotide variant not specified [RCV004487666] Chr16:3091789 [GRCh38]
Chr16:3141790 [GRCh37]
Chr16:16p13.3		 uncertain significance
NM_032805.3(ZSCAN10):c.1117G>T (p.Gly373Trp) single nucleotide variant not specified [RCV004487671] Chr16:3090317 [GRCh38]
Chr16:3140318 [GRCh37]
Chr16:16p13.3		 uncertain significance
NM_032805.3(ZSCAN10):c.2120G>A (p.Arg707Gln) single nucleotide variant not specified [RCV004487660] Chr16:3089314 [GRCh38]
Chr16:3139315 [GRCh37]
Chr16:16p13.3		 uncertain significance
NM_032805.3(ZSCAN10):c.461G>A (p.Cys154Tyr) single nucleotide variant not specified [RCV004487663] Chr16:3092252 [GRCh38]
Chr16:3142253 [GRCh37]
Chr16:16p13.3		 uncertain significance
GRCh37/hg19 16p13.3(chr16:2990033-4837646)x1 copy number loss not provided [RCV003885471] Chr16:2990033..4837646 [GRCh37]
Chr16:16p13.3		 pathogenic
GRCh37/hg19 16p13.3(chr16:2979687-3220680)x3 copy number gain not provided [RCV003885470] Chr16:2979687..3220680 [GRCh37]
Chr16:16p13.3		 uncertain significance
NM_032805.3(ZSCAN10):c.2326C>A (p.Arg776Ser) single nucleotide variant not specified [RCV004487662] Chr16:3089108 [GRCh38]
Chr16:3139109 [GRCh37]
Chr16:16p13.3		 uncertain significance
NM_032805.3(ZSCAN10):c.767C>T (p.Ala256Val) single nucleotide variant not specified [RCV004487668] Chr16:3091560 [GRCh38]
Chr16:3141561 [GRCh37]
Chr16:16p13.3		 uncertain significance
NC_000016.9:g.(?_2550259)_(3154076_?)del deletion Developmental and epileptic encephalopathy, 1 [RCV004582752] Chr16:2550259..3154076 [GRCh37]
Chr16:16p13.3		 pathogenic
NM_032805.3(ZSCAN10):c.1112del (p.Pro371fs) deletion Otofacial neurodevelopmental syndrome [RCV004690522] Chr16:3090322 [GRCh38]
Chr16:3140323 [GRCh37]
Chr16:16p13.3		 pathogenic
NC_000016.9:g.(?_339420)_(3767509_?)dup duplication Epilepsy [RCV004581460]|Idiopathic generalized epilepsy [RCV004581461] Chr16:339420..3767509 [GRCh37]
Chr16:16p13.3		 uncertain significance
NM_032805.3(ZSCAN10):c.913G>A (p.Ala305Thr) single nucleotide variant not specified [RCV004603821] Chr16:3090521 [GRCh38]
Chr16:3140522 [GRCh37]
Chr16:16p13.3		 uncertain significance
NM_032805.3(ZSCAN10):c.895G>A (p.Val299Met) single nucleotide variant not specified [RCV004603823] Chr16:3090539 [GRCh38]
Chr16:3140540 [GRCh37]
Chr16:16p13.3		 uncertain significance
NM_032805.3(ZSCAN10):c.233A>T (p.His78Leu) single nucleotide variant not specified [RCV004603824] Chr16:3092705 [GRCh38]
Chr16:3142706 [GRCh37]
Chr16:16p13.3		 uncertain significance
NM_032805.3(ZSCAN10):c.1642C>T (p.Arg548Trp) single nucleotide variant not specified [RCV004603822] Chr16:3089792 [GRCh38]
Chr16:3139793 [GRCh37]
Chr16:16p13.3		 uncertain significance
NM_032805.3(ZSCAN10):c.1456C>T (p.Gln486Ter) single nucleotide variant Otofacial neurodevelopmental syndrome [RCV004690521] Chr16:3089978 [GRCh38]
Chr16:3139979 [GRCh37]
Chr16:16p13.3		 pathogenic
GRCh37/hg19 16p13.3-13.13(chr16:85881-12268399)x3 copy number gain not provided [RCV004819312] Chr16:85881..12268399 [GRCh37]
Chr16:16p13.3-13.13		 pathogenic
NM_032805.3(ZSCAN10):c.598_602del (p.Pro200fs) deletion Otofacial neurodevelopmental syndrome [RCV004821051] Chr16:3092111..3092115 [GRCh38]
Chr16:3142112..3142116 [GRCh37]
Chr16:16p13.3		 pathogenic
GRCh37/hg19 16p13.3(chr16:513767-5555136)x3 copy number gain not provided [RCV004819313] Chr16:513767..5555136 [GRCh37]
Chr16:16p13.3		 pathogenic
NM_032805.3(ZSCAN10):c.1768C>T (p.Arg590Trp) single nucleotide variant not specified [RCV004892123] Chr16:3089666 [GRCh38]
Chr16:3139667 [GRCh37]
Chr16:16p13.3		 uncertain significance
NM_032805.3(ZSCAN10):c.323C>T (p.Pro108Leu) single nucleotide variant not specified [RCV004892124] Chr16:3092615 [GRCh38]
Chr16:3142616 [GRCh37]
Chr16:16p13.3		 uncertain significance
NM_032805.3(ZSCAN10):c.1645C>T (p.Pro549Ser) single nucleotide variant not specified [RCV004892128] Chr16:3089789 [GRCh38]
Chr16:3139790 [GRCh37]
Chr16:16p13.3		 uncertain significance
NM_032805.3(ZSCAN10):c.1159C>T (p.Arg387Cys) single nucleotide variant not specified [RCV004892117] Chr16:3090275 [GRCh38]
Chr16:3140276 [GRCh37]
Chr16:16p13.3		 uncertain significance
NM_032805.3(ZSCAN10):c.1589C>A (p.Ala530Asp) single nucleotide variant not specified [RCV004892120] Chr16:3089845 [GRCh38]
Chr16:3139846 [GRCh37]
Chr16:16p13.3		 uncertain significance
NM_032805.3(ZSCAN10):c.2146G>A (p.Gly716Arg) single nucleotide variant not specified [RCV004892121] Chr16:3089288 [GRCh38]
Chr16:3139289 [GRCh37]
Chr16:16p13.3		 uncertain significance
NM_032805.3(ZSCAN10):c.2189G>C (p.Gly730Ala) single nucleotide variant not specified [RCV004892122] Chr16:3089245 [GRCh38]
Chr16:3139246 [GRCh37]
Chr16:16p13.3		 uncertain significance
NM_032805.3(ZSCAN10):c.923T>C (p.Leu308Pro) single nucleotide variant not specified [RCV004892125] Chr16:3090511 [GRCh38]
Chr16:3140512 [GRCh37]
Chr16:16p13.3		 uncertain significance
NM_032805.3(ZSCAN10):c.323C>G (p.Pro108Arg) single nucleotide variant not specified [RCV004892126] Chr16:3092615 [GRCh38]
Chr16:3142616 [GRCh37]
Chr16:16p13.3		 uncertain significance
NM_032805.3(ZSCAN10):c.1637G>T (p.Gly546Val) single nucleotide variant not specified [RCV004892127] Chr16:3089797 [GRCh38]
Chr16:3139798 [GRCh37]
Chr16:16p13.3		 uncertain significance
NM_032805.3(ZSCAN10):c.1087A>C (p.Lys363Gln) single nucleotide variant not specified [RCV004892115] Chr16:3090347 [GRCh38]
Chr16:3140348 [GRCh37]
Chr16:16p13.3		 uncertain significance
NM_032805.3(ZSCAN10):c.1987G>T (p.Ala663Ser) single nucleotide variant not specified [RCV004892116] Chr16:3089447 [GRCh38]
Chr16:3139448 [GRCh37]
Chr16:16p13.3		 uncertain significance
NM_032805.3(ZSCAN10):c.719C>T (p.Ala240Val) single nucleotide variant not specified [RCV004892118] Chr16:3091774 [GRCh38]
Chr16:3141775 [GRCh37]
Chr16:16p13.3		 uncertain significance
NM_032805.3(ZSCAN10):c.872A>G (p.Glu291Gly) single nucleotide variant not specified [RCV004892119] Chr16:3090562 [GRCh38]
Chr16:3140563 [GRCh37]
Chr16:16p13.3		 uncertain significance
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:3247
Count of miRNA genes:818
Interacting mature miRNAs:965
Transcripts:ENST00000252463, ENST00000538082, ENST00000571903, ENST00000572431, ENST00000572548, ENST00000573931, ENST00000575108, ENST00000576483, ENST00000576985, ENST00000577059
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
406986559GWAS635535_Hmean corpuscular hemoglobin concentration QTL GWAS635535 (human)2e-10mean corpuscular hemoglobin concentrationmean corpuscular hemoglobin concentration (CMO:0000291)1630976733097674Human
597280006GWAS1376080_Hglycerate measurement QTL GWAS1376080 (human)4e-08glycerate measurement1630950473095048Human

Markers in Region
RH91869  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37163,138,963 - 3,139,099UniSTSGRCh37
Build 36163,078,964 - 3,079,100RGDNCBI36
Celera163,344,433 - 3,344,569RGD
Cytogenetic Map16p13.3UniSTS
HuRef163,110,487 - 3,110,623UniSTS
GeneMap99-GB4 RH Map1657.66UniSTS


Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
entire extraembryonic component
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
895 1454 2192 1389 3998 1117 1496 2 298 1292 159 1821 4493 4220 24 3010 416 1353 1151 141

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001282415 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001282416 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001365272 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001365273 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_032805 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017023791 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017023792 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC108134 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK027455 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK074736 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC111367 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC114452 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471112 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CN366927 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068262 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CQ782664 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CX781288 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DA729263 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  MK764728 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENST00000252463   ⟹   ENSP00000252463
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl163,088,894 - 3,092,860 (-)Ensembl
Ensembl Acc Id: ENST00000538082   ⟹   ENSP00000440047
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl163,088,989 - 3,099,295 (-)Ensembl
Ensembl Acc Id: ENST00000571903
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl163,090,232 - 3,093,236 (-)Ensembl
Ensembl Acc Id: ENST00000572431   ⟹   ENSP00000460473
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl163,090,234 - 3,099,228 (-)Ensembl
Ensembl Acc Id: ENST00000572548   ⟹   ENSP00000461871
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl163,090,552 - 3,099,261 (-)Ensembl
Ensembl Acc Id: ENST00000573931
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl163,096,450 - 3,099,292 (-)Ensembl
Ensembl Acc Id: ENST00000575108   ⟹   ENSP00000459520
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl163,088,894 - 3,099,292 (-)Ensembl
Ensembl Acc Id: ENST00000576483   ⟹   ENSP00000458260
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl163,092,229 - 3,099,294 (-)Ensembl
Ensembl Acc Id: ENST00000576985   ⟹   ENSP00000458879
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl163,088,890 - 3,099,294 (-)Ensembl
Ensembl Acc Id: ENST00000577059
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl163,092,451 - 3,099,270 (-)Ensembl
RefSeq Acc Id: NM_001282415   ⟹   NP_001269344
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38163,088,890 - 3,099,294 (-)NCBI
HuRef163,110,415 - 3,120,845 (-)NCBI
CHM1_1163,138,765 - 3,149,192 (-)NCBI
T2T-CHM13v2.0163,115,369 - 3,125,775 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001282416   ⟹   NP_001269345
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38163,088,890 - 3,099,294 (-)NCBI
HuRef163,110,415 - 3,120,845 (-)NCBI
CHM1_1163,138,765 - 3,149,192 (-)NCBI
T2T-CHM13v2.0163,115,369 - 3,125,775 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001365272   ⟹   NP_001352201
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38163,088,890 - 3,099,294 (-)NCBI
T2T-CHM13v2.0163,115,369 - 3,125,775 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001365273   ⟹   NP_001352202
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38163,088,890 - 3,099,294 (-)NCBI
T2T-CHM13v2.0163,115,369 - 3,125,775 (-)NCBI
Sequence:
RefSeq Acc Id: NM_032805   ⟹   NP_116194
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38163,088,890 - 3,099,294 (-)NCBI
GRCh37163,138,895 - 3,149,293 (-)NCBI
Build 36163,078,896 - 3,082,862 (-)NCBI Archive
Celera163,344,365 - 3,348,331 (-)RGD
HuRef163,110,415 - 3,120,845 (-)NCBI
CHM1_1163,138,765 - 3,149,192 (-)NCBI
T2T-CHM13v2.0163,115,369 - 3,125,775 (-)NCBI
Sequence:
RefSeq Acc Id: NP_116194   ⟸   NM_032805
- Peptide Label: isoform 1
- UniProtKB: I3L1J3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001269344   ⟸   NM_001282415
- Peptide Label: isoform 2
- UniProtKB: A0A5P9VN71 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001269345   ⟸   NM_001282416
- Peptide Label: isoform 3
- UniProtKB: Q96SZ4 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001352202   ⟸   NM_001365273
- Peptide Label: isoform 2
- UniProtKB: A0A5P9VN71 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001352201   ⟸   NM_001365272
- Peptide Label: isoform 4
Ensembl Acc Id: ENSP00000252463   ⟸   ENST00000252463
Ensembl Acc Id: ENSP00000461871   ⟸   ENST00000572548
Ensembl Acc Id: ENSP00000460473   ⟸   ENST00000572431
Ensembl Acc Id: ENSP00000459520   ⟸   ENST00000575108
Ensembl Acc Id: ENSP00000458260   ⟸   ENST00000576483
Ensembl Acc Id: ENSP00000458879   ⟸   ENST00000576985
Ensembl Acc Id: ENSP00000440047   ⟸   ENST00000538082
Protein Domains
C2H2-type   SCAN box

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q96SZ4-F1-model_v2 AlphaFold Q96SZ4 1-725 view protein structure

Promoters
RGD ID:6793653
Promoter ID:HG_KWN:22866
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell_12Hour,   K562,   Lymphoblastoid,   NB4
Transcripts:UC002CTY.1
Position:
Human AssemblyChrPosition (strand)Source
Build 36163,089,941 - 3,090,441 (-)MPROMDB
RGD ID:7231133
Promoter ID:EPDNEW_H21311
Type:initiation region
Name:ZSCAN10_1
Description:zinc finger and SCAN domain containing 10
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.; Paired-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh38163,099,292 - 3,099,352EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:12997 AgrOrtholog
COSMIC ZSCAN10 COSMIC
Ensembl Genes ENSG00000130182 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENST00000252463.6 UniProtKB/Swiss-Prot
  ENST00000538082 ENTREZGENE
  ENST00000538082.5 UniProtKB/Swiss-Prot
  ENST00000572548.1 UniProtKB/TrEMBL
  ENST00000575108 ENTREZGENE
  ENST00000575108.5 UniProtKB/Swiss-Prot
  ENST00000576483.1 UniProtKB/TrEMBL
  ENST00000576985 ENTREZGENE
  ENST00000576985.6 UniProtKB/TrEMBL
Gene3D-CATH 1.10.4020.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Classic Zinc Finger UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
GTEx ENSG00000130182 GTEx
HGNC ID HGNC:12997 ENTREZGENE
Human Proteome Map ZSCAN10 Human Proteome Map
InterPro SCAN-C2H2_zinc_finger UniProtKB/TrEMBL
  SCAN_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SCAN_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_C2H2_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_C2H2_type UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report hsa:84891 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
NCBI Gene ZSCAN10 ENTREZGENE
OMIM 618365 OMIM
PANTHER C2H2-TYPE DOMAIN-CONTAINING PROTEIN UniProtKB/TrEMBL
  FI01424P UniProtKB/TrEMBL
  MYELOID ZINC FINGER 1 UniProtKB/TrEMBL
  PROTEIN ZBED8-RELATED UniProtKB/TrEMBL
  SCAN DOMAIN-CONTAINING PROTEIN 3 UniProtKB/TrEMBL
  TRANSCRIPTIONAL REPRESSOR PROTEIN YY UniProtKB/Swiss-Prot
  ZINC FINGER AND SCAN DOMAIN-CONTAINING UniProtKB/TrEMBL
  ZINC FINGER PROTEIN UniProtKB/TrEMBL
  ZINC FINGER PROTEIN 143 UniProtKB/Swiss-Prot
Pfam SCAN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  zf-C2H2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB PA162410957 PharmGKB
PROSITE SCAN_BOX UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART SCAN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZnF_C2H2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP Retrovirus capsid dimerization domain-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF57667 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A5P9VN71 ENTREZGENE, UniProtKB/TrEMBL
  I3L0Q3_HUMAN UniProtKB/TrEMBL
  I3L1J3 ENTREZGENE, UniProtKB/TrEMBL
  I3NI43_HUMAN UniProtKB/TrEMBL
  Q96SZ4 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary B3KQD3 UniProtKB/Swiss-Prot
  H0YFS6 UniProtKB/Swiss-Prot
  Q1WWM2 UniProtKB/Swiss-Prot