Cfap206 (cilia and flagella associated protein 206) - Rat Genome Database

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Gene: Cfap206 (cilia and flagella associated protein 206) Mus musculus
Analyze
Symbol: Cfap206
Name: cilia and flagella associated protein 206
RGD ID: 1321666
MGI Page MGI
Description: Involved in regulation of cilium beat frequency; regulation of flagellated sperm motility; and sperm axoneme assembly. Located in axoneme and ciliary basal body. Is expressed in several structures, including brain; nasal cavity; pharynx; reproductive system; and respiratory system. Orthologous to human CFAP206 (cilia and flagella associated protein 206).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 1700003M02Rik; AU024269; cilia- and flagella-associated protein 206; hypothetical protein LOC69329; RP23-76M15.3; UPF0704 protein C6orf165 homolog
RGD Orthologs
Human
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39434,688,574 - 34,730,263 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl434,688,559 - 34,730,206 (-)EnsemblGRCm39 Ensembl
GRCm38434,688,574 - 34,730,263 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl434,688,559 - 34,730,206 (-)EnsemblGRCm38mm10GRCm38
MGSCv37434,658,581 - 34,677,455 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36434,900,219 - 34,919,065 (-)NCBIMGSCv36mm8
Celera434,439,106 - 34,458,598 (-)NCBICelera
Cytogenetic Map4A5NCBI
cM Map416.86NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:10725249   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:14610273   PMID:16141072   PMID:16141073   PMID:17971504  
PMID:21267068   PMID:21873635   PMID:32376681   PMID:34255152   PMID:38355793  


Genomics

Comparative Map Data
Cfap206
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39434,688,574 - 34,730,263 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl434,688,559 - 34,730,206 (-)EnsemblGRCm39 Ensembl
GRCm38434,688,574 - 34,730,263 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl434,688,559 - 34,730,206 (-)EnsemblGRCm38mm10GRCm38
MGSCv37434,658,581 - 34,677,455 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36434,900,219 - 34,919,065 (-)NCBIMGSCv36mm8
Celera434,439,106 - 34,458,598 (-)NCBICelera
Cytogenetic Map4A5NCBI
cM Map416.86NCBI
CFAP206
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38687,407,972 - 87,464,465 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl687,407,972 - 87,464,465 (+)EnsemblGRCh38hg38GRCh38
GRCh37688,117,690 - 88,174,183 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36688,174,440 - 88,230,901 (+)NCBINCBI36Build 36hg18NCBI36
Build 34688,174,449 - 88,202,494NCBI
Celera688,536,482 - 88,592,999 (+)NCBICelera
Cytogenetic Map6q15NCBI
HuRef685,333,838 - 85,390,242 (+)NCBIHuRef
CHM1_1688,215,197 - 88,271,617 (+)NCBICHM1_1
T2T-CHM13v2.0688,616,818 - 88,673,229 (+)NCBIT2T-CHM13v2.0
Cfap206
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8554,050,697 - 54,095,438 (-)NCBIGRCr8
mRatBN7.2549,254,399 - 49,299,145 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl549,254,408 - 49,299,090 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx551,447,663 - 51,492,376 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0553,047,889 - 53,092,602 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0552,966,672 - 53,004,497 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0550,148,685 - 50,193,580 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl550,148,658 - 50,193,571 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0554,717,639 - 54,762,527 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4551,301,617 - 51,349,062 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1551,302,004 - 51,349,232 (-)NCBI
Celera548,004,836 - 48,045,836 (-)NCBICelera
Cytogenetic Map5q21NCBI
CFAP206
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v25107,454,646 - 107,546,000 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan16105,349,044 - 105,439,856 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0685,252,905 - 85,341,418 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1688,561,499 - 88,615,960 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl688,561,373 - 88,615,960 (+)Ensemblpanpan1.1panPan2
CFAP206
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11246,898,734 - 46,961,603 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1246,898,937 - 46,961,562 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1246,707,089 - 46,769,674 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01247,735,177 - 47,767,611 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.11246,996,612 - 47,059,545 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01246,923,922 - 46,986,961 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01247,113,364 - 47,176,235 (+)NCBIUU_Cfam_GSD_1.0
Cfap206
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494682,050,207 - 82,088,041 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365104,375,888 - 4,420,650 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365104,382,826 - 4,420,650 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CFAP206
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl155,821,542 - 55,854,014 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1155,821,511 - 55,854,203 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2162,514,805 - 62,546,074 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CFAP206
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11311,885,121 - 11,948,315 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1311,894,651 - 11,948,310 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666040188,149,433 - 188,203,722 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cfap206
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247996,833,791 - 6,923,918 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247996,833,797 - 6,923,650 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Cfap206
1763 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:759
Count of miRNA genes:497
Interacting mature miRNAs:575
Transcripts:ENSMUST00000029971, ENSMUST00000108136, ENSMUST00000135563, ENSMUST00000137514, ENSMUST00000160209, ENSMUST00000162495
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301203Alcp8_malcohol preference locus 8 (mouse)Not determined41739516051395290Mouse
1301586Stheal3_msoft tissue heal 3 (mouse)Not determined42865844262658566Mouse
10401115Pgia35_mproteoglycan induced arthritis 35 (mouse)Not determined41256237746562509Mouse
39128211Lwq22_mliver weight QTL 22 (mouse)41789261688982216Mouse
1558992Ses8_msalmonella enteritidis susceptibility 8 (mouse)Not determined4868324042683429Mouse
4141302Ssrq5_mstress response QTL 5 (mouse)Not determined868324042683430Mouse
4141555Nbwa2_mNZB and NZW autoimmunity 2 (mouse)Not determined41789251551892635Mouse
1300574Im2_mimmunoregulatory 2 (mouse)Not determined42807768262077816Mouse
12880405Jcdq1_mjoint cartilage degeneration QTL 1 (mouse)41256237746562509Mouse
4142318Lyr2_mlymphoma resistance 2 (mouse)Not determined1401045763283678Mouse
1301697Sluc18_msusceptibility to lung cancer 18 (mouse)Not determined42237344856373612Mouse
1357453Kidq4_mkidney weight QTL 4 (mouse)Not determined41789261688982216Mouse
4142047Mvwf3_mmodifier of von Willebrand factor 3 (mouse)Not determined14010457117072206Mouse
11567249Elorr3_methanol induced loss of righting response 3 (mouse)43722677156268235Mouse
1357877Synch1_msynechia 1 (mouse)Not determined42870992562710107Mouse
25440481Moaq1_mmodifier of alien QTL 1 (mouse)41950000046000000Mouse
1301237Alcp7_malcohol preference locus 7 (mouse)Not determined41739516051395290Mouse
4141911W6q15_mweight 6 weeks QTL 15 (mouse)Not determined1789261688982216Mouse
1302075Bdln6_mbody length 6 (mouse)Not determined42237344856373612Mouse
1302010Wta1_mweight adult 1 (mouse)Not determined4868324042683429Mouse
4142290Ssrq9_mstress response QTL 9 (mouse)Not determined3439516046332776Mouse
1301437Scon1_msucrose consumption 1 (mouse)Not determined42237344856373612Mouse
10401905Sicd3_mseizure-induced cell death 3 (mouse)Not determined4939552543760862Mouse
1301473Triglq1_mtriglyceride QTL 1 (mouse)Not determined4868324042683429Mouse
1300769Pcyts2_mplasmacytoma susceptibility 2 (mouse)Not determined42211194456112145Mouse
1301990Arvm1_mautoimmune renal vasculitis 1 (mouse)Not determined42933264663332776Mouse
1302058Hrtfm3_mheart failure modifier 3 (mouse)Not determined42211194456112145Mouse
1302184Aaom1_mautoimmune aoritis in MRL mice 1 (mouse)Not determined42432229946332776Mouse
1302125Lxw1_mlupus BXSB x NZW 1 (mouse)Not determined4868324042683429Mouse

Markers in Region
AU024269  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38434,688,761 - 34,688,841UniSTSGRCm38
MGSCv37434,636,010 - 34,636,090UniSTSGRCm37
Celera434,416,591 - 34,416,671UniSTS
Cytogenetic Map4A5UniSTS
Whitehead/MRC_RH4582.04UniSTS


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSMUST00000029971   ⟹   ENSMUSP00000029971
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl434,688,559 - 34,730,206 (-)Ensembl
GRCm38.p6 Ensembl434,688,559 - 34,730,206 (-)Ensembl
Ensembl Acc Id: ENSMUST00000108136   ⟹   ENSMUSP00000103771
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl434,711,332 - 34,730,178 (-)Ensembl
GRCm38.p6 Ensembl434,711,332 - 34,730,178 (-)Ensembl
Ensembl Acc Id: ENSMUST00000135563
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl434,688,961 - 34,719,609 (-)Ensembl
GRCm38.p6 Ensembl434,688,961 - 34,719,609 (-)Ensembl
Ensembl Acc Id: ENSMUST00000137514   ⟹   ENSMUSP00000116947
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl434,721,416 - 34,730,195 (-)Ensembl
GRCm38.p6 Ensembl434,721,416 - 34,730,195 (-)Ensembl
Ensembl Acc Id: ENSMUST00000160209
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl434,723,560 - 34,730,195 (-)Ensembl
GRCm38.p6 Ensembl434,723,560 - 34,730,195 (-)Ensembl
Ensembl Acc Id: ENSMUST00000162495   ⟹   ENSMUSP00000124760
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl434,721,385 - 34,730,195 (-)Ensembl
GRCm38.p6 Ensembl434,721,385 - 34,730,195 (-)Ensembl
RefSeq Acc Id: NM_001347062   ⟹   NP_001333991
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39434,688,574 - 34,730,206 (-)NCBI
GRCm38434,688,574 - 34,730,206 (-)NCBI
Sequence:
RefSeq Acc Id: NM_027041   ⟹   NP_081317
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39434,711,332 - 34,730,206 (-)NCBI
GRCm38434,711,332 - 34,730,206 (-)NCBI
MGSCv37434,658,581 - 34,677,455 (-)RGD
Celera434,439,106 - 34,458,598 (-)RGD
cM Map4 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006538232   ⟹   XP_006538295
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39434,688,574 - 34,730,263 (-)NCBI
GRCm38434,688,574 - 34,730,263 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006538233   ⟹   XP_006538296
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39434,688,574 - 34,730,237 (-)NCBI
GRCm38434,688,574 - 34,730,236 (-)NCBI
Sequence:
RefSeq Acc Id: NP_081317   ⟸   NM_027041
- Peptide Label: isoform 2
- UniProtKB: Q6PE87 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006538296   ⟸   XM_006538233
- Peptide Label: isoform X1
- UniProtKB: A2AT47 (UniProtKB/Swiss-Prot),   A2AT46 (UniProtKB/Swiss-Prot),   A2AT45 (UniProtKB/Swiss-Prot),   Q9DAP6 (UniProtKB/Swiss-Prot),   Q6PE87 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006538295   ⟸   XM_006538232
- Peptide Label: isoform X1
- UniProtKB: A2AT47 (UniProtKB/Swiss-Prot),   A2AT46 (UniProtKB/Swiss-Prot),   A2AT45 (UniProtKB/Swiss-Prot),   Q9DAP6 (UniProtKB/Swiss-Prot),   Q6PE87 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001333991   ⟸   NM_001347062
- Peptide Label: isoform 1
- UniProtKB: A2AT47 (UniProtKB/Swiss-Prot),   A2AT46 (UniProtKB/Swiss-Prot),   A2AT45 (UniProtKB/Swiss-Prot),   Q9DAP6 (UniProtKB/Swiss-Prot),   Q6PE87 (UniProtKB/Swiss-Prot)
Ensembl Acc Id: ENSMUSP00000029971   ⟸   ENSMUST00000029971
Ensembl Acc Id: ENSMUSP00000103771   ⟸   ENSMUST00000108136
Ensembl Acc Id: ENSMUSP00000116947   ⟸   ENSMUST00000137514
Ensembl Acc Id: ENSMUSP00000124760   ⟸   ENSMUST00000162495

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q6PE87-F1-model_v2 AlphaFold Q6PE87 1-622 view protein structure

Promoters
RGD ID:6883008
Promoter ID:EPDNEW_M4955
Type:initiation region
Name:Cfap206_1
Description:Mus musculus cilia and flagella associated protein 206 , transcriptvariant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38434,730,206 - 34,730,266EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1916579 AgrOrtholog
Ensembl Genes ENSMUSG00000028294 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000029971 ENTREZGENE
  ENSMUST00000029971.12 UniProtKB/Swiss-Prot
  ENSMUST00000108136 ENTREZGENE
  ENSMUST00000108136.8 UniProtKB/Swiss-Prot
  ENSMUST00000137514.3 UniProtKB/TrEMBL
  ENSMUST00000162495.8 UniProtKB/TrEMBL
InterPro FAP206 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:69329 UniProtKB/Swiss-Prot
MGD MGI:1916579 ENTREZGENE
NCBI Gene 69329 ENTREZGENE
PANTHER CILIA- AND FLAGELLA-ASSOCIATED PROTEIN 206 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR21442 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam FAP206 UniProtKB/Swiss-Prot
PhenoGen Cfap206 PhenoGen
UniProt A2AT45 ENTREZGENE
  A2AT46 ENTREZGENE
  A2AT47 ENTREZGENE
  CF206_MOUSE UniProtKB/Swiss-Prot
  E0CXC1_MOUSE UniProtKB/TrEMBL
  Q6PE87 ENTREZGENE
  Q9DAP6 ENTREZGENE
  Z4YM47_MOUSE UniProtKB/TrEMBL
UniProt Secondary A2AT45 UniProtKB/Swiss-Prot
  A2AT46 UniProtKB/Swiss-Prot
  A2AT47 UniProtKB/Swiss-Prot
  Q9DAP6 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-11-17 Cfap206  cilia and flagella associated protein 206  1700003M02Rik  RIKEN cDNA 1700003M02 gene  Symbol and/or name change 5135510 APPROVED