Pou4f3 (POU domain, class 4, transcription factor 3) - Rat Genome Database

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Gene: Pou4f3 (POU domain, class 4, transcription factor 3) Mus musculus
Analyze
Symbol: Pou4f3
Name: POU domain, class 4, transcription factor 3
RGD ID: 1321372
MGI Page MGI
Description: Enables DNA-binding transcription factor activity and sequence-specific DNA binding activity. Involved in positive regulation of transcription by RNA polymerase II. Acts upstream of or within several processes, including nervous system development; neuromuscular process controlling balance; and sensory perception of sound. Located in nucleus. Is expressed in several structures, including genitourinary system; nervous system; and sensory organ. Human ortholog(s) of this gene implicated in autosomal dominant nonsyndromic deafness 15. Orthologous to human POU4F3 (POU class 4 homeobox 3).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: brain-3C; brain-specific homeobox POU domain protein 3C; brain-specific homeobox/POU domain protein 3C; Brn; Brn-3; brn-3C; Brn3; Brn3.1; Brn3c; ddl; dreidel
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391842,527,662 - 42,529,158 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1842,527,604 - 42,530,314 (+)EnsemblGRCm39 Ensembl
GRCm381842,394,597 - 42,396,093 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1842,394,539 - 42,397,249 (+)EnsemblGRCm38mm10GRCm38
MGSCv371842,554,251 - 42,555,747 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361842,520,616 - 42,521,983 (+)NCBIMGSCv36mm8
Celera1843,756,095 - 43,757,583 (+)NCBICelera
Cytogenetic Map18B3NCBI
cM Map1822.58NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
abnormal autonomic nervous system physiology  (IAGP)
abnormal basilar membrane morphology  (IAGP)
abnormal body temperature homeostasis  (IAGP)
abnormal circadian temperature homeostasis  (IAGP)
abnormal cochlea morphology  (IAGP)
abnormal cochlear ganglion morphology  (IAGP)
abnormal cochlear hair cell development  (IAGP)
abnormal cochlear inner hair cell morphology  (IAGP)
abnormal cochlear outer hair cell morphology  (IAGP)
abnormal cochlear sensory epithelium morphology  (IAGP)
abnormal crista ampullaris neuroepithelium morphology  (IAGP)
abnormal cuticular plate morphology  (IAGP)
abnormal Deiters cell morphology  (IAGP)
abnormal distortion product otoacoustic emission  (IAGP)
abnormal energy expenditure  (IAGP)
abnormal gait  (IAGP)
abnormal inner ear vestibule morphology  (IAGP)
abnormal motor capabilities/coordination/movement  (IAGP)
abnormal motor coordination/balance  (IAGP)
abnormal organ of Corti morphology  (IAGP)
abnormal organ of Corti supporting cell differentiation  (IAGP)
abnormal outer hair cell stereociliary bundle morphology  (IAGP)
abnormal pillar cell differentiation  (IAGP)
abnormal retina ganglion cell morphology  (IAGP)
abnormal retina morphology  (IAGP)
abnormal retina nerve fiber layer morphology  (IAGP)
abnormal sensory neuron innervation pattern  (IAGP)
abnormal utricle morphology  (IAGP)
abnormal vestibular hair cell development  (IAGP)
abnormal vestibular hair cell morphology  (IAGP)
abnormal vestibular hair cell stereociliary bundle morphology  (IAGP)
abnormal vestibular system physiology  (IAGP)
abnormal vestibulocochlear ganglion morphology  (IAGP)
absent cochlear hair cell stereocilia  (IAGP)
absent cochlear hair cells  (IAGP)
absent cochlear inner hair cells  (IAGP)
absent cochlear outer hair cells  (IAGP)
absent Deiters cells  (IAGP)
absent inner hair cell stereocilia  (IAGP)
absent organ of Corti supporting cells  (IAGP)
absent outer hair cell stereocilia  (IAGP)
absent pillar cells  (IAGP)
absent pinna reflex  (IEA)
absent tunnel of Corti  (IAGP)
absent vestibular hair cell stereocilia  (IAGP)
absent vestibular hair cells  (IAGP)
circling  (IAGP)
cochlear ganglion degeneration  (IAGP)
cochlear hair cell degeneration  (IAGP)
cochlear inner hair cell degeneration  (IAGP)
cochlear outer hair cell degeneration  (IAGP)
conductive hearing loss  (IAGP)
deafness  (IAGP)
decreased body size  (IAGP)
decreased body weight  (IAGP)
decreased retina ganglion cell number  (IAGP)
decreased startle reflex  (IAGP)
decreased vestibular hair cell number  (IAGP)
degeneration of organ of Corti supporting cells  (IAGP)
head bobbing  (IAGP)
head tossing  (IAGP)
hyperactivity  (IAGP)
impaired balance  (IAGP)
impaired hearing  (IAGP)
impaired swimming  (IAGP)
increased amacrine cell number  (IAGP)
increased or absent threshold for auditory brainstem response  (IAGP)
mixed hearing loss  (IAGP)
no abnormal phenotype detected  (IEA)
organ of Corti degeneration  (IAGP)
pillar cell degeneration  (IAGP)
premature death  (IAGP)
reduced fertility  (IAGP)
sensorineural hearing loss  (IAGP)
small cochlear ganglion  (IAGP)
small Rosenthal canal  (IAGP)
small vestibular ganglion  (IAGP)
stria vascularis degeneration  (IAGP)
thin retina ganglion layer  (IAGP)
vestibular ganglion degeneration  (IAGP)
vestibular hair cell degeneration  (IAGP)
weight loss  (IAGP)
References

References - curated
# Reference Title Reference Citation
1. Mouse brain organization revealed through direct genome-scale TF expression analysis. Gray PA, etal., Science 2004 Dec 24;306(5705):2255-7.
2. MGDs mouse GO annotations MGD data from the GO Consortium
3. MGD IEA MGD IEA
4. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
5. Mouse MP Annotation Import Pipeline RGD automated import pipeline
6. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
8. Mutation in transcription factor POU4F3 associated with inherited progressive hearing loss in humans. Vahava O, etal., Science. 1998 Mar 20;279(5358):1950-4.
Additional References at PubMed
PMID:7623109   PMID:7935408   PMID:8162704   PMID:8248179   PMID:8290353   PMID:8632990   PMID:8637595   PMID:8876243   PMID:8955272   PMID:9256502   PMID:9321482   PMID:9547240  
PMID:9598366   PMID:9630743   PMID:9735355   PMID:9927480   PMID:10225993   PMID:10320095   PMID:10349636   PMID:10452377   PMID:10654596   PMID:11042159   PMID:11076861   PMID:11217851  
PMID:11807038   PMID:11889045   PMID:12441305   PMID:12466504   PMID:12466851   PMID:12477932   PMID:12585968   PMID:15254021   PMID:15465029   PMID:15652707   PMID:15653467   PMID:15846349  
PMID:16141072   PMID:16141073   PMID:16226339   PMID:16597514   PMID:16602821   PMID:16702404   PMID:17331196   PMID:18287559   PMID:19452222   PMID:19908278   PMID:20394804   PMID:20533399  
PMID:20661473   PMID:20826176   PMID:20932939   PMID:21267068   PMID:21360794   PMID:21402877   PMID:21677750   PMID:21771810   PMID:21858141   PMID:21873635   PMID:21935940   PMID:21958861  
PMID:22262898   PMID:22326227   PMID:22411557   PMID:22985730   PMID:22988430   PMID:23100430   PMID:23150788   PMID:23193000   PMID:23536072   PMID:23614009   PMID:24116103   PMID:24496619  
PMID:24643061   PMID:24952082   PMID:24952961   PMID:25372459   PMID:25714426   PMID:25849379   PMID:25904789   PMID:25954156   PMID:25995473   PMID:27210758   PMID:27259519   PMID:27403879  
PMID:27559308   PMID:27592349   PMID:27751776   PMID:28009286   PMID:28263708   PMID:28402854   PMID:29107558   PMID:29770538   PMID:30179675   PMID:30455179   PMID:30770379   PMID:30833597  
PMID:31260439   PMID:31286854   PMID:31609468   PMID:31915380   PMID:32012462   PMID:32375046   PMID:32970669   PMID:33135183   PMID:33244175   PMID:33285239   PMID:33293609   PMID:33382037  
PMID:33495483   PMID:33649316   PMID:33882317   PMID:34003106   PMID:34266958   PMID:34301830   PMID:34544869   PMID:35148175   PMID:36187289   PMID:36252002   PMID:36445327   PMID:36584686  
PMID:37305436   PMID:37585469   PMID:38047084   PMID:38344749   PMID:38483314  


Genomics

Comparative Map Data
Pou4f3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391842,527,662 - 42,529,158 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1842,527,604 - 42,530,314 (+)EnsemblGRCm39 Ensembl
GRCm381842,394,597 - 42,396,093 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1842,394,539 - 42,397,249 (+)EnsemblGRCm38mm10GRCm38
MGSCv371842,554,251 - 42,555,747 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361842,520,616 - 42,521,983 (+)NCBIMGSCv36mm8
Celera1843,756,095 - 43,757,583 (+)NCBICelera
Cytogenetic Map18B3NCBI
cM Map1822.58NCBI
POU4F3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385146,338,839 - 146,341,728 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5146,338,839 - 146,341,728 (+)EnsemblGRCh38hg38GRCh38
GRCh375145,718,402 - 145,721,291 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 365145,698,869 - 145,700,200 (+)NCBINCBI36Build 36hg18NCBI36
Build 345145,698,868 - 145,700,200NCBI
Celera5141,798,516 - 141,800,012 (+)NCBICelera
Cytogenetic Map5q32NCBI
HuRef5140,865,275 - 140,866,771 (+)NCBIHuRef
CHM1_15145,151,269 - 145,152,765 (+)NCBICHM1_1
T2T-CHM13v2.05146,874,404 - 146,877,293 (+)NCBIT2T-CHM13v2.0
Pou4f3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81834,641,191 - 34,643,783 (+)NCBIGRCr8
mRatBN7.21834,390,205 - 34,392,797 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1834,390,205 - 34,392,797 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1834,494,376 - 34,496,968 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01835,212,696 - 35,215,288 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01834,589,597 - 34,592,189 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01836,713,869 - 36,716,461 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1836,713,869 - 36,716,461 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01836,378,513 - 36,381,105 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41835,600,462 - 35,603,054 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11835,635,727 - 35,637,065 (+)NCBI
Celera1833,986,853 - 33,989,445 (+)NCBICelera
Cytogenetic Map18p11NCBI
Pou4f3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554157,777,114 - 7,778,622 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554157,777,296 - 7,778,622 (-)NCBIChiLan1.0ChiLan1.0
POU4F3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24141,590,020 - 141,593,050 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15139,729,571 - 139,732,601 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05141,786,048 - 141,789,078 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15147,800,924 - 147,802,420 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5147,800,924 - 147,802,420 (+)Ensemblpanpan1.1panPan2
POU4F3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1240,762,499 - 40,764,131 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl240,762,477 - 40,765,161 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha237,806,385 - 37,807,718 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0241,220,849 - 41,222,182 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl241,220,849 - 41,222,182 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1238,292,452 - 38,293,785 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0239,102,291 - 39,103,624 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0239,927,685 - 39,929,018 (+)NCBIUU_Cfam_GSD_1.0
Pou4f3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213146,774,487 - 146,777,274 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365048,348,398 - 8,351,804 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365048,348,460 - 8,351,246 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
POU4F3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl2147,692,751 - 147,695,346 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.12147,693,013 - 147,694,345 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.22154,124,728 - 154,126,059 (+)NCBISscrofa10.2Sscrofa10.2susScr3
POU4F3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12348,915,247 - 48,920,163 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2348,917,217 - 48,918,548 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603428,870,406 - 28,873,294 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Pou4f3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247745,821,024 - 5,822,351 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247745,821,024 - 5,822,351 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Pou4f3
32 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:422
Count of miRNA genes:299
Interacting mature miRNAs:355
Transcripts:ENSMUST00000025374
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
27226723Tibw9_mtibia width 9, proximal, 16 week (mouse)18320000060933072Mouse
1558849W3q15_mweight 3 weeks QTL 15 (mouse)Not determined18504111961272643Mouse
13504732Cath6_mcarotid atherosclerosis 6 (mouse)181363712647637126Mouse
1357603Mom3_mmodifier of Min 3 (mouse)Not determined181403002367098962Mouse
1300994Pvcan3_mprotection against vaginal candidiasis 3 (mouse)Not determined181619964050199776Mouse
1301307Phospq1_mphospholipid QTL 1 (mouse)Not determined181813970452139859Mouse
1300638Im7_mimmunoregulatory 7 (mouse)Not determined181901887453018992Mouse
1558743Kcal1_mkilocalorie 1 (mouse)Not determined181901887453018992Mouse
11532709Sluc41_msusceptibility to lung cancer 41 (mouse)182095369457590708Mouse
13463476Hctq8_mhematocrit QTL 8 (mouse)182121758055217727Mouse
1300877Adip8_madiposity 8 (mouse)Not determined182261991456620127Mouse
11532710Sluc41a_msusceptibility to lung cancer 41a (mouse)182261991456620127Mouse
11532715Sluc41b_msusceptibility to lung cancer 41b (mouse)182261991456620127Mouse
11532716Sluc41c_msusceptibility to lung cancer 41c (mouse)182261991456620127Mouse
1301570Sluc14_msusceptibility to lung cancer 14 (mouse)Not determined182261991456620127Mouse
4142031Moen1_mmodifier of engrailed QTL 1 (mouse)Not determined182411556058115730Mouse
25823173Hrsq12_mhost response to SARS QTL 12, hemorrhage (mouse)182489588178339555Mouse
12904950Smmq3_msoleus muscle mass QTL 3 (mouse)182605687560056875Mouse
25823167Hrsq5_mhost response to SARS QTL 5, D3% weight (mouse)182724111558827077Mouse
25823171Hrsq10_mhost response to SARS QTL 10, D4% weight (mouse)182724111558827077Mouse
25823174Hrsq11_mhost response to SARS QTL 11, log titer (mouse)182724111558827077Mouse
1301400Lmr13_mleishmaniasis resistance 13 (mouse)Not determined182810938062109518Mouse
4141857Mhysq5_mmale hybrid sterility QTL 5 (mouse)Not determined2813060462130739Mouse
1302163Bmd16_mbone mineral density 16 (mouse)Not determined182966791463668060Mouse
12880412V125Dq12_mvitamin D active form serum level QTL 12 (mouse)183023306764233067Mouse
1300685Scc5_mcolon tumor susceptibility 5 (mouse)Not determined183198848065988629Mouse
1357690Vtbt19_mvertebral trabecular bone trait 19 (mouse)Not determined183309104367091221Mouse
1301771Pcyts6_mplasmacytoma susceptibility 6 (mouse)Not determined183565863269658851Mouse
11041903Lmr27_mleishmaniasis resistance 27 (mouse)183618756745109518Mouse
4142366Chlq10_mcirculating hormone level QTL 10 (mouse)Not determined183629102270291180Mouse
15039381Ltgq8_mliver triglyceride QTL 8 (mouse)183820656972206569Mouse
15039383Mvlq5_mmicrovesicular liver lesion QTL 5 (mouse)183820656972206569Mouse
15039384Liviq1_mliver inflammation QTL 1 (mouse)183820656972206569Mouse
15039386Mvlq4_mmacrovesicular liver lesion QTL 4 (mouse)183820656972206569Mouse
12050070Nabq2_mnasal bone morphology QTL 2 (mouse)183910367773103793Mouse
1357639Obsty4_mobesity 4 (mouse)Not determined183961991484638778Mouse

Markers in Region
PMC125354P3  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381842,395,133 - 42,395,362UniSTSGRCm38
MGSCv371842,554,787 - 42,555,016UniSTSGRCm37
Celera1843,756,623 - 43,756,852UniSTS
Cytogenetic Map18B3-E1UniSTS
Pou4f3  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381842,394,690 - 42,395,592UniSTSGRCm38
MGSCv371842,554,344 - 42,555,246UniSTSGRCm37
Celera1843,756,188 - 43,757,082UniSTS
Cytogenetic Map18B3-E1UniSTS
cM Map1824.0UniSTS
UniSTS:491575  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381842,394,597 - 42,396,093UniSTSGRCm38
MGSCv371842,554,251 - 42,555,747UniSTSGRCm37
Celera1843,756,095 - 43,757,583UniSTS
Cytogenetic Map18B3-E1UniSTS


Expression


Sequence


RefSeq Acc Id: ENSMUST00000025374   ⟹   ENSMUSP00000025374
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1842,527,604 - 42,530,314 (+)Ensembl
GRCm38.p6 Ensembl1842,394,539 - 42,397,249 (+)Ensembl
RefSeq Acc Id: ENSMUST00000237247   ⟹   ENSMUSP00000158000
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1842,528,140 - 42,530,314 (+)Ensembl
GRCm38.p6 Ensembl1842,395,075 - 42,397,249 (+)Ensembl
RefSeq Acc Id: NM_138945   ⟹   NP_620395
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391842,527,662 - 42,529,158 (+)NCBI
GRCm381842,394,597 - 42,396,093 (+)ENTREZGENE
MGSCv371842,554,251 - 42,555,747 (+)RGD
Celera1843,756,095 - 43,757,583 (+)RGD
cM Map18 ENTREZGENE
Sequence:
Protein Sequences
Protein RefSeqs NP_620395 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAB30579 (Get FASTA)   NCBI Sequence Viewer  
  AAI45942 (Get FASTA)   NCBI Sequence Viewer  
  EDL10035 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000025374
  ENSMUSP00000025374.4
  ENSMUSP00000158000.2
GenBank Protein Q63955 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_620395   ⟸   NM_138945
- UniProtKB: A6H6N6 (UniProtKB/Swiss-Prot),   Q63955 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSMUSP00000158000   ⟸   ENSMUST00000237247
RefSeq Acc Id: ENSMUSP00000025374   ⟸   ENSMUST00000025374
Protein Domains
Homeobox   POU-specific

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q63955-F1-model_v2 AlphaFold Q63955 1-338 view protein structure

Promoters
RGD ID:13677680
Promoter ID:EPDNEW_M22989
Type:single initiation site
Name:Pou4f3_1
Description:Mus musculus POU domain, class 4, transcription factor 3 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381842,394,568 - 42,394,628EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:102523 AgrOrtholog
Ensembl Genes ENSMUSG00000024497 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000025374 ENTREZGENE
  ENSMUST00000025374.4 UniProtKB/Swiss-Prot
  ENSMUST00000237247.2 UniProtKB/TrEMBL
Gene3D-CATH 1.10.260.40 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Homeodomain-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Homeobox-like_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Homeobox_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Homeobox_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Lambda_DNA-bd_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  POU UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  POU_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:18998 UniProtKB/Swiss-Prot
MGD MGI:102523 ENTREZGENE
NCBI Gene 18998 ENTREZGENE
PANTHER POU DOMAIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR11636:SF43 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Homeodomain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Pou UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Pou4f3 PhenoGen
PRINTS POUDOMAIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE HOMEOBOX_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  HOMEOBOX_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  POU_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  POU_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  POU_3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART HOX UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  POU UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF46689 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF47413 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A494BAF0_MOUSE UniProtKB/TrEMBL
  A6H6N6 ENTREZGENE
  PO4F3_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
UniProt Secondary A6H6N6 UniProtKB/Swiss-Prot