Atp6v0a2 (ATPase, H+ transporting, lysosomal V0 subunit A2) - Rat Genome Database

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Gene: Atp6v0a2 (ATPase, H+ transporting, lysosomal V0 subunit A2) Mus musculus
Analyze
Symbol: Atp6v0a2
Name: ATPase, H+ transporting, lysosomal V0 subunit A2
RGD ID: 1320850
MGI Page MGI
Description: Predicted to enable ATPase binding activity. Predicted to be involved in cellular response to increased oxygen levels; intracellular iron ion homeostasis; and vacuolar acidification. Located in acrosomal vesicle and perinuclear region of cytoplasm. Part of proton-transporting V-type ATPase, V0 domain. Is expressed in several structures, including genitourinary system; hemolymphoid system gland; integumental system; sensory organ; and skeleton. Human ortholog(s) of this gene implicated in autosomal recessive cutis laxa type IIA and wrinkly skin syndrome. Orthologous to human ATP6V0A2 (ATPase H+ transporting V0 subunit a2).
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: 8430408C20Rik; AI385560; ATP; ATP6a2; Atp6n1d; Atp6n2; ATPase, H+ transporting, lysosomal (vacuolar proton pump) non-catalytic accessory protein 2 (38kD); ATPase, H+ transporting, lysosomal V0 subunit a; AW489264; C76904; immune suppressor factor J6B7; ISF; J6B7; lysosomal H(+)-transporting ATPase V0 subunit a 2; lysosomal H(+)-transporting ATPase V0 subunit a2; MGC124341; MGC124342; SHIF; Stv1; T-cell expressing clone j6; Tj6; TJ6M; TJ6s; V-ATPase 116 kDa; V-ATPase 116 kDa subunit a 2; V-ATPase 116 kDa subunit a2; V-ATPase a2; V-type proton ATPase 116 kDa subunit a; V-type proton ATPase 116 kDa subunit a 2; V-type proton ATPase 116 kDa subunit a isoform 2; V-type proton ATPase 116 kDa subunit a2; vacuolar proton translocating ATPase 116 kDa subunit a
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395124,767,117 - 124,801,519 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5124,766,641 - 124,801,519 (+)EnsemblGRCm39 Ensembl
GRCm385124,629,052 - 124,724,455 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5124,628,576 - 124,724,455 (+)EnsemblGRCm38mm10GRCm38
MGSCv375125,079,648 - 125,097,437 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv375125,192,573 - 125,202,524 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365125,001,189 - 125,011,627 (+)NCBIMGSCv36mm8
Celera5121,704,480 - 121,735,509 (+)NCBICelera
Cytogenetic Map5FNCBI
cM Map563.7NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2. Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Ko MS, etal., Development 2000 Apr;127(8):1737-49.
3. MGDs mouse GO annotations MGD data from the GO Consortium
4. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
5. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
6. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
7. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
8. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
9. Three subunit a isoforms of mouse vacuolar H(+)-ATPase. Preferential expression of the a3 isoform during osteoclast differentiation. Toyomura T, etal., J Biol Chem 2000 Mar 24;275(12):8760-5.
Additional References at PubMed
PMID:2247090   PMID:7619235   PMID:7671812   PMID:8739451   PMID:8889548   PMID:9325490   PMID:10349636   PMID:10702241   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11375395  
PMID:11544199   PMID:11872743   PMID:12477932   PMID:12672822   PMID:12963731   PMID:14681479   PMID:15489334   PMID:15747579   PMID:15782199   PMID:16141072   PMID:16141073   PMID:16343424  
PMID:16415858   PMID:16964442   PMID:17497178   PMID:17595521   PMID:19549681   PMID:20153292   PMID:20178780   PMID:20711468   PMID:21267068   PMID:21593477   PMID:21873635   PMID:22221850  
PMID:22454532   PMID:22794259   PMID:23288846   PMID:24623332   PMID:26226211   PMID:27809299   PMID:29178186   PMID:30237863   PMID:31456807   PMID:35948619  


Genomics

Comparative Map Data
Atp6v0a2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395124,767,117 - 124,801,519 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5124,766,641 - 124,801,519 (+)EnsemblGRCm39 Ensembl
GRCm385124,629,052 - 124,724,455 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5124,628,576 - 124,724,455 (+)EnsemblGRCm38mm10GRCm38
MGSCv375125,079,648 - 125,097,437 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv375125,192,573 - 125,202,524 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365125,001,189 - 125,011,627 (+)NCBIMGSCv36mm8
Celera5121,704,480 - 121,735,509 (+)NCBICelera
Cytogenetic Map5FNCBI
cM Map563.7NCBI
ATP6V0A2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3812123,712,353 - 123,761,755 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl12123,712,353 - 123,761,755 (+)EnsemblGRCh38hg38GRCh38
GRCh3712124,196,900 - 124,246,302 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3612122,762,818 - 122,810,394 (+)NCBINCBI36Build 36hg18NCBI36
Build 3412122,721,744 - 122,769,321NCBI
Celera12123,793,121 - 123,842,693 (+)NCBICelera
Cytogenetic Map12q24.31NCBI
HuRef12121,158,054 - 121,207,491 (+)NCBIHuRef
CHM1_112124,017,815 - 124,067,195 (+)NCBICHM1_1
T2T-CHM13v2.012123,711,219 - 123,760,679 (+)NCBIT2T-CHM13v2.0
Atp6v0a2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81237,608,211 - 37,640,860 (-)NCBIGRCr8
mRatBN7.21231,947,220 - 31,979,875 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1231,822,733 - 32,007,069 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1233,129,001 - 33,158,515 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01233,740,320 - 33,769,838 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01232,792,188 - 32,821,709 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01237,368,321 - 37,398,233 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1237,363,906 - 37,425,596 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01239,238,423 - 39,269,298 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41233,061,611 - 33,092,421 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11232,941,066 - 32,949,116 (-)NCBI
Celera1233,639,711 - 33,670,024 (-)NCBICelera
Cytogenetic Map12q15NCBI
Atp6v0a2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554825,311,434 - 5,337,697 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554825,311,434 - 5,337,684 (-)NCBIChiLan1.0ChiLan1.0
ATP6V0A2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v210131,787,497 - 131,834,937 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan112131,783,904 - 131,831,213 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v012121,297,959 - 121,343,294 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.112125,522,886 - 125,569,858 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl12125,522,886 - 125,569,858 (+)Ensemblpanpan1.1panPan2
ATP6V0A2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1265,911,319 - 5,952,773 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl265,912,887 - 5,952,306 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha266,074,169 - 6,115,619 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0266,161,361 - 6,202,794 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl266,162,010 - 6,229,946 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1266,094,884 - 6,136,318 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0266,187,243 - 6,228,453 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0266,140,432 - 6,181,874 (-)NCBIUU_Cfam_GSD_1.0
Atp6v0a2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118158,344,853 - 158,374,799 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365581,103,135 - 1,134,573 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365581,104,627 - 1,138,487 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ATP6V0A2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1429,250,405 - 29,297,683 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11429,250,400 - 29,297,697 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21430,944,213 - 30,989,982 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ATP6V0A2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.111119,042,465 - 119,095,380 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl11119,042,525 - 119,097,450 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037126,179,187 - 126,233,498 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Atp6v0a2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474723,471,403 - 23,504,576 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474723,471,697 - 23,501,018 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Atp6v0a2
1698 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:110
Count of miRNA genes:88
Interacting mature miRNAs:103
Transcripts:ENSMUST00000037865
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
27226719Tibw6_mtibia width 6, proximal, 16 week (mouse)572857343139985755Mouse
10412191Bbaa24_mB.burgdorferi-associated arthritis 24 (mouse)Not determined5119945037141700466Mouse
1301974Chab7_mcholesterol absorption 7 (mouse)Not determined595233214129233330Mouse
11528552Scram1_mspinal cord resistance to astrocytoma modifier 1 (mouse)5121455402151758149Mouse
1300827Cora1_mcorrelation in cytokine production 1 (mouse)Not determined5115156883149157015Mouse
25314315Mlh1fc4_mMLH1 foci count 4 (mouse)574460661132528839Mouse
1357662Lprq4_mlipoprotein QTL 4 (mouse)Not determined5114021753129632606Mouse
14746986Manh58_mmandible shape 58 (mouse)5102446283136446283Mouse
4142064Tmc1m4_mTmc1 modifier 4 (mouse)Not determined554500177127001072Mouse
10412239Alpq7_malcohol preference QTL 7 (mouse)Not determined5104705939138705939Mouse
9587780Afw16_mabdominal fat weight QTL 16 (mouse)Not determined592830166126830285Mouse
1357644Egrd1_mearly growth rate, direct effect 1 (mouse)Not determined595434580129434786Mouse
12859290Criq2_mCitrobacter rodentium infection QTL 2 (mouse)5101332579135332579Mouse
1300940Actd3_mactivity-distance traveled 3 (mouse)Not determined596320385130320533Mouse
1300659Pcd8ts1_mp-glycoprotein positive CD8 T cell subset 1 (mouse)Not determined597021753131021986Mouse
1301362Prnr1_mprion resistance 1 (mouse)Not determined589418876146787935Mouse
1558774Lith17_mlithogenic gene 17 (mouse)Not determined595465549129465722Mouse
1300913Bwefm_mbody weight females and males day 10 (mouse)Not determined5109439348143439459Mouse
4141081Nidd7k_mNidd7 on KK-A (mouse)Not determined119945037149347326Mouse
10402486Dipa1_mdrug induced psychomotor activation 1 (mouse)Not determined595465549129465722Mouse
1301624Aevm2_mautoimmune extremity vasculitis in MRL mice 2 (mouse)Not determined5101863832135864028Mouse
10043890Trigq4_mtriglyceride QTL 4 (mouse)Not determined5107906299141906412Mouse
4141139Hmtb4_mhemostasis and thrombosis rebleeding time 4 (mouse)Not determined108762509126882944Mouse
1302079Lbw3_mlupus NZB x NZW 3 (mouse)Not determined5124700335151758149Mouse
11532736Sluc33b_msusceptibility to lung cancer 33b (mouse)5102945037136945196Mouse
4141519Hmtb5_mhemostasis and thrombosis bleeding time 5 (mouse)Not determined99949422126882944Mouse
26884395Humsd2_mhumerus midshaft diameter 2, 10 week (mouse)570057343132528839Mouse
1301858Smdq1_msegregation of mitochondrial DNA QTL 1 (mouse)Not determined597021753131021986Mouse
1301986Bpq4_mblood pressure QTL 4 (mouse)Not determined5121555236151758149Mouse
1301857Bglq14_mbody growth late QTL 14 (mouse)Not determined5118948964151758149Mouse
10412202Bbaa26_mB.burgdorferi-associated arthritis 26 (mouse)Not determined5104583688138555455Mouse
1301543Hypch_mhypercholesterolemia (mouse)Not determined5109238624139118905Mouse
12904945Tammq2_mtibialis anterior muscle mass QTL 2 (mouse)5100665965134665965Mouse
4142473Chlq11_mcirculating hormone level QTL 11 (mouse)Not determined5107906299141906412Mouse
13464251Ahl21_mage related hearing loss, early onset 21 (mouse)5109167240143167381Mouse
11341716Rvfs3_mRift Valley fever susceptibility 3 (mouse)526441234138455402Mouse
13464244Ahl19_mage related hearing loss, early onset 19 (mouse)595465549129465722Mouse
1301226Bbaa2_mB.burgdorferi-associated arthritis 2 (mouse)Not determined5115156883149157015Mouse
12904959Smmq1_msoleus muscle mass QTL 1 (mouse)5100665965134665965Mouse
10412197Bbaa25_mB.burgdorferi-associated arthritis 25 (mouse)Not determined5109167240143167381Mouse
1301102Cia14_mcollagen induced arthritis 14 (mouse)Not determined5113320385138555455Mouse
13506928Recrq8_mrecombination rate in male meiosis QTL 8 (mouse)574460661132528839Mouse
13464243Ahl20_mage related hearing loss, early onset 20 (mouse)5107906299141906412Mouse

Markers in Region
Atp6v0a2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm385124,721,733 - 124,722,103UniSTSGRCm38
MGSCv375125,202,104 - 125,202,474UniSTSGRCm37
Celera5121,735,089 - 121,735,459UniSTS
Cytogenetic Map5FUniSTS
cM Map5 UniSTS
UniSTS:235322  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm385124,723,676 - 124,723,779UniSTSGRCm38
MGSCv375125,204,046 - 125,204,149UniSTSGRCm37
Celera5121,737,031 - 121,737,134UniSTS
Cytogenetic Map5FUniSTS
RH126054  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm385124,724,242 - 124,724,441UniSTSGRCm38
MGSCv375125,204,612 - 125,204,811UniSTSGRCm37
Celera5121,737,597 - 121,737,796UniSTS
Cytogenetic Map5FUniSTS
Whitehead/MRC_RH51527.8UniSTS
AW489264  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm385124,721,874 - 124,722,009UniSTSGRCm38
MGSCv375125,202,245 - 125,202,380UniSTSGRCm37
Celera5121,735,230 - 121,735,365UniSTS
Cytogenetic Map5FUniSTS
Whitehead/MRC_RH51525.42UniSTS
Whitehead/MRC_RH51525.83UniSTS
AI385560  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm385124,722,417 - 124,722,509UniSTSGRCm38
MGSCv375125,202,788 - 125,202,880UniSTSGRCm37
Celera5121,735,773 - 121,735,865UniSTS
Cytogenetic Map5FUniSTS
Whitehead/MRC_RH51525.83UniSTS


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_011596 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB022323 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC242457 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF218252 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF388674 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK017467 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK032909 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK155055 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK160318 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK170122 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK179435 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK182205 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK182287 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK184273 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK186441 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK186556 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK187495 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK189492 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK190936 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK193082 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK195507 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK195863 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK196625 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK199650 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK201484 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK213223 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK215731 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK219190 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC013056 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC018369 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC108991 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC108992 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC112905 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BP764071 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466529 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CJ076040 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M31226 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  MG954274 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X55184 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000037865   ⟹   ENSMUSP00000039737
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5124,767,117 - 124,801,519 (+)Ensembl
GRCm38.p6 Ensembl5124,629,052 - 124,724,455 (+)Ensembl
Ensembl Acc Id: ENSMUST00000197087
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5124,792,769 - 124,800,665 (+)Ensembl
GRCm38.p6 Ensembl5124,715,705 - 124,723,601 (+)Ensembl
Ensembl Acc Id: ENSMUST00000197161   ⟹   ENSMUSP00000143461
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5124,795,260 - 124,798,880 (+)Ensembl
GRCm38.p6 Ensembl5124,718,196 - 124,721,816 (+)Ensembl
Ensembl Acc Id: ENSMUST00000197931
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5124,767,234 - 124,779,544 (+)Ensembl
GRCm38.p6 Ensembl5124,629,169 - 124,641,606 (+)Ensembl
Ensembl Acc Id: ENSMUST00000198382   ⟹   ENSMUSP00000143284
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5124,767,130 - 124,799,203 (+)Ensembl
GRCm38.p6 Ensembl5124,629,065 - 124,722,139 (+)Ensembl
Ensembl Acc Id: ENSMUST00000199526
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5124,791,206 - 124,794,956 (+)Ensembl
GRCm38.p6 Ensembl5124,714,142 - 124,717,892 (+)Ensembl
Ensembl Acc Id: ENSMUST00000200292
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5124,766,641 - 124,775,478 (+)Ensembl
GRCm38.p6 Ensembl5124,628,576 - 124,637,540 (+)Ensembl
RefSeq Acc Id: NM_011596   ⟹   NP_035726
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395124,767,117 - 124,801,519 (+)NCBI
GRCm385124,629,052 - 124,724,455 (+)NCBI
MGSCv375125,079,648 - 125,097,437 (+)RGD
Celera5121,704,465 - 121,737,810 (+)NCBI
cM Map5 ENTREZGENE
Sequence:
RefSeq Acc Id: NP_035726   ⟸   NM_011596
- UniProtKB: Q8VHU0 (UniProtKB/Swiss-Prot),   Q3U2X3 (UniProtKB/Swiss-Prot),   A4FU82 (UniProtKB/Swiss-Prot),   Q9JHJ2 (UniProtKB/Swiss-Prot),   P15920 (UniProtKB/Swiss-Prot)
- Sequence:
Ensembl Acc Id: ENSMUSP00000143284   ⟸   ENSMUST00000198382
Ensembl Acc Id: ENSMUSP00000143461   ⟸   ENSMUST00000197161
Ensembl Acc Id: ENSMUSP00000039737   ⟸   ENSMUST00000037865

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P15920-F1-model_v2 AlphaFold P15920 1-856 view protein structure

Promoters
RGD ID:6888116
Promoter ID:EPDNEW_M7509
Type:multiple initiation site
Name:Atp6v0a2_1
Description:Mus musculus ATPase, H+ transporting, lysosomal V0 subunit A2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm385124,629,076 - 124,629,136EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:104855 AgrOrtholog
Ensembl Genes ENSMUSG00000038023 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000037865 ENTREZGENE
  ENSMUST00000037865.13 UniProtKB/Swiss-Prot
  ENSMUST00000197161.2 UniProtKB/TrEMBL
  ENSMUST00000198382.5 UniProtKB/TrEMBL
InterPro V-ATPase_116kDa_su UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  V-type_ATPase_116kDa_su_euka UniProtKB/Swiss-Prot
KEGG Report mmu:21871 UniProtKB/Swiss-Prot
MGD MGI:104855 ENTREZGENE
NCBI Gene 21871 ENTREZGENE
PANTHER PTHR11629 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  V-TYPE PROTON ATPASE 116 KDA SUBUNIT A2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam V_ATPase_I UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Atp6v0a2 PhenoGen
PIRSF ATP6V0A1 UniProtKB/Swiss-Prot
UniProt A0A0G2JFS2_MOUSE UniProtKB/TrEMBL
  A0A0G2JG81_MOUSE UniProtKB/TrEMBL
  A4FU82 ENTREZGENE
  P15920 ENTREZGENE
  Q3U2X3 ENTREZGENE
  Q8VHU0 ENTREZGENE
  Q9JHJ2 ENTREZGENE
  VPP2_MOUSE UniProtKB/Swiss-Prot
UniProt Secondary A4FU82 UniProtKB/Swiss-Prot
  Q3U2X3 UniProtKB/Swiss-Prot
  Q8VHU0 UniProtKB/Swiss-Prot
  Q9JHJ2 UniProtKB/Swiss-Prot