3110002L15Rik (RIKEN cDNA 3110002L15 gene) - Rat Genome Database

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Gene: 3110002L15Rik (RIKEN cDNA 3110002L15 gene) Mus musculus
Analyze
Symbol: 3110002L15Rik (Ensembl: Cep57)
Name: RIKEN cDNA 3110002L15 gene (Ensembl:centrosomal protein 57)
RGD ID: 1320468
MGI Page MGI
Description: Enables microtubule binding activity. Involved in protein homooligomerization and spermatid development. Located in centrosome; cytoplasm; and nucleus. Is expressed in midbrain ventricular layer and telencephalon ventricular layer. Human ortholog(s) of this gene implicated in mosaic variegated aneuploidy syndrome 2. Orthologous to human CEP57 (centrosomal protein 57); INTERACTS WITH 1,2-dimethylhydrazine; 2,3,7,8-tetrachlorodibenzodioxine; 3,4-methylenedioxymethamphetamine.
Type: protein-coding
Previously known as: 4921510P06Rik; 4931428M20Rik; AI467480; centrosomal protein 57; centrosomal protein of 57 kDa; Cep57; mKIAA0092; testis-specific protein 57; translokin; Tsp; Tsp57
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39913,717,979 - 13,738,698 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl913,719,088 - 13,738,403 (-)EnsemblGRCm39 Ensembl
GRCm38913,807,783 - 13,827,407 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl913,807,792 - 13,827,107 (-)EnsemblGRCm38mm10GRCm38
MGSCv37913,612,232 - 13,631,537 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36913,558,192 - 13,577,449 (-)NCBIMGSCv36mm8
Celera911,086,224 - 11,105,529 (-)NCBICelera
Cytogenetic Map9A1NCBI
cM Map93.49NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dimethylhydrazine  (EXP)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-dinitrotoluene  (ISO)
3,4-methylenedioxymethamphetamine  (EXP)
4,4'-sulfonyldiphenol  (EXP,ISO)
5-aza-2'-deoxycytidine  (ISO)
acrolein  (ISO)
aflatoxin B1  (EXP,ISO)
all-trans-retinoic acid  (ISO)
alpha-pinene  (ISO)
antimycin A  (ISO)
aristolochic acid A  (ISO)
arsenous acid  (ISO)
azoxystrobin  (ISO)
benzo[a]pyrene  (EXP)
benzo[a]pyrene diol epoxide I  (ISO)
bisphenol A  (EXP,ISO)
cadmium dichloride  (ISO)
carbamazepine  (ISO)
CGP 52608  (ISO)
cisplatin  (ISO)
cobalt dichloride  (ISO)
coumestrol  (ISO)
cyclosporin A  (ISO)
diarsenic trioxide  (ISO)
diazinon  (ISO)
Dibutyl phosphate  (ISO)
dibutyl phthalate  (EXP)
dicrotophos  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
elemental selenium  (ISO)
Enterolactone  (ISO)
ethanol  (EXP)
ethyl methanesulfonate  (ISO)
folic acid  (EXP)
FR900359  (ISO)
fulvestrant  (ISO)
hydrogen peroxide  (ISO)
lead(0)  (ISO)
methotrexate  (ISO)
methyl methanesulfonate  (ISO)
methylparaben  (ISO)
mitomycin C  (ISO)
oxaliplatin  (ISO)
ozone  (EXP,ISO)
paracetamol  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
phenobarbital  (EXP)
phenytoin  (ISO)
picoxystrobin  (ISO)
potassium chromate  (ISO)
progesterone  (ISO)
resveratrol  (ISO)
rotenone  (ISO)
SB 431542  (ISO)
selenium atom  (ISO)
silicon dioxide  (ISO)
sodium arsenite  (ISO)
sunitinib  (ISO)
tert-butyl hydroperoxide  (ISO)
testosterone enanthate  (ISO)
topotecan  (ISO)
trichostatin A  (ISO)
triphenyl phosphate  (ISO)
triptonide  (EXP)
valproic acid  (ISO)
vitamin E  (ISO)
zoledronic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
centriolar satellite  (ISO)
centrosome  (IBA,IDA,ISO)
cytoplasm  (IDA)
cytoskeleton  (IEA)
cytosol  (ISO)
Golgi apparatus  (ISO)
microtubule  (ISO,ISS)
nucleus  (IDA)

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2. MGDs mouse GO annotations MGD data from the GO Consortium
3. Prediction of the coding sequences of mouse homologues of KIAA gene: III. the complete nucleotide sequences of 500 mouse KIAA-homologous cDNAs identified by screening of terminal sequences of cDNA clones randomly sampled from size-fractionated libraries. Okazaki N, etal., DNA Res 2003 Aug 31;10(4):167-80.
4. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
5. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
6. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:16141072   PMID:16141073  


Genomics

Comparative Map Data
3110002L15Rik
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39913,717,979 - 13,738,698 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl913,719,088 - 13,738,403 (-)EnsemblGRCm39 Ensembl
GRCm38913,807,783 - 13,827,407 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl913,807,792 - 13,827,107 (-)EnsemblGRCm38mm10GRCm38
MGSCv37913,612,232 - 13,631,537 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36913,558,192 - 13,577,449 (-)NCBIMGSCv36mm8
Celera911,086,224 - 11,105,529 (-)NCBICelera
Cytogenetic Map9A1NCBI
cM Map93.49NCBI
CEP57
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381195,790,498 - 95,832,693 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1195,789,965 - 95,832,693 (+)EnsemblGRCh38hg38GRCh38
GRCh371195,523,662 - 95,565,857 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361195,163,290 - 95,205,502 (+)NCBINCBI36Build 36hg18NCBI36
Celera1192,822,024 - 92,864,242 (+)NCBICelera
Cytogenetic Map11q21NCBI
HuRef1191,589,397 - 91,631,656 (+)NCBIHuRef
CHM1_11195,406,634 - 95,448,873 (+)NCBICHM1_1
T2T-CHM13v2.01195,797,891 - 95,840,118 (+)NCBIT2T-CHM13v2.0
Cep57
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8818,951,179 - 18,971,205 (-)NCBIGRCr8
mRatBN7.2810,669,588 - 10,689,257 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl810,669,590 - 10,689,249 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx814,656,395 - 14,676,043 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0812,954,121 - 12,973,769 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0810,930,498 - 10,950,158 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0812,335,430 - 12,355,425 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl812,335,432 - 12,355,091 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0812,285,706 - 12,305,716 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4810,608,688 - 10,627,914 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1810,608,258 - 10,628,586 (-)NCBI
Celera812,170,101 - 12,189,763 (-)NCBICelera
Cytogenetic Map8q12NCBI
Cep57
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_004955412638,718 - 693,837 (+)NCBIChiLan1.0ChiLan1.0
CEP57
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2996,635,265 - 96,796,834 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11197,727,216 - 97,888,280 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01190,795,277 - 90,838,166 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11194,322,862 - 94,365,643 (+)NCBIpanpan1.1PanPan1.1panPan2
CEP57
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1215,314,290 - 5,360,474 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl215,314,449 - 5,361,154 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha215,306,946 - 5,372,017 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0215,470,572 - 5,535,631 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl215,489,231 - 5,535,379 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1215,265,268 - 5,330,343 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0215,326,888 - 5,391,987 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0215,374,577 - 5,439,676 (-)NCBIUU_Cfam_GSD_1.0
Cep57
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494780,630,996 - 80,670,623 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367001,875,795 - 1,915,003 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367001,874,509 - 1,914,688 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CEP57
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl927,812,929 - 27,859,568 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1927,812,944 - 27,858,293 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2931,728,611 - 31,738,258 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CEP57
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1187,046,915 - 87,088,999 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl187,046,639 - 87,093,786 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604338,725,753 - 38,769,778 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cep57
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462473540,647,104 - 40,670,640 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in 3110002L15Rik
377 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:2059
Count of miRNA genes:580
Interacting mature miRNAs:698
Transcripts:ENSMUST00000034398, ENSMUST00000124524, ENSMUST00000124883, ENSMUST00000131425, ENSMUST00000134746, ENSMUST00000142494, ENSMUST00000144484, ENSMUST00000147115, ENSMUST00000148086, ENSMUST00000148904, ENSMUST00000150893, ENSMUST00000151878
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300899Chol6_mcholesterol 6 (mouse)Not determined9129902913Mouse
35673312Ari7_mantibody response to influenza 7, day 45, IgG3 (mouse)9780000122211296Mouse
1300849Sles4_msystemic lupus erythmatosus suppressor 4 (mouse)Not determined9910756237306370Mouse
10043917Obq37_mobesity QTL 37 (mouse)Not determined91339117547391175Mouse
13434920Dcollq1_mdifferential colonization level QTL 1 (mouse)9130341840Mouse
1300532Tbs2_mtuberculosis severity 2 (mouse)Not determined91236997046370114Mouse
4142326Tgq19_mtriglyceride QTL 19 (mouse)Not determined121060750Mouse
13504833Bglu19_mblood glucose level 19 (mouse)9991076843910768Mouse

Markers in Region
AI467480  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38913,807,929 - 13,808,178UniSTSGRCm38
MGSCv37913,612,373 - 13,612,622UniSTSGRCm37
Celera911,086,365 - 11,086,614UniSTS
Cytogenetic Map9A2UniSTS
Whitehead/MRC_RH9218.42UniSTS


Expression


Sequence


Ensembl Acc Id: ENSMUST00000034398   ⟹   ENSMUSP00000034398
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl913,719,090 - 13,738,403 (-)Ensembl
GRCm38.p6 Ensembl913,807,794 - 13,827,107 (-)Ensembl
Ensembl Acc Id: ENSMUST00000124524
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl913,724,743 - 13,727,693 (-)Ensembl
GRCm38.p6 Ensembl913,813,447 - 13,816,397 (-)Ensembl
Ensembl Acc Id: ENSMUST00000124883   ⟹   ENSMUSP00000119081
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl913,719,480 - 13,729,982 (-)Ensembl
GRCm38.p6 Ensembl913,808,184 - 13,818,686 (-)Ensembl
Ensembl Acc Id: ENSMUST00000131425
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl913,720,043 - 13,721,710 (-)Ensembl
GRCm38.p6 Ensembl913,808,747 - 13,810,414 (-)Ensembl
Ensembl Acc Id: ENSMUST00000134746   ⟹   ENSMUSP00000116713
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl913,719,845 - 13,738,321 (-)Ensembl
GRCm38.p6 Ensembl913,808,549 - 13,827,025 (-)Ensembl
Ensembl Acc Id: ENSMUST00000142494   ⟹   ENSMUSP00000114749
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl913,719,088 - 13,738,287 (-)Ensembl
GRCm38.p6 Ensembl913,807,792 - 13,826,991 (-)Ensembl
Ensembl Acc Id: ENSMUST00000144484   ⟹   ENSMUSP00000114940
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl913,724,728 - 13,738,349 (-)Ensembl
GRCm38.p6 Ensembl913,813,432 - 13,827,053 (-)Ensembl
Ensembl Acc Id: ENSMUST00000147115   ⟹   ENSMUSP00000116931
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl913,719,121 - 13,738,251 (-)Ensembl
GRCm38.p6 Ensembl913,807,825 - 13,826,955 (-)Ensembl
Ensembl Acc Id: ENSMUST00000148086   ⟹   ENSMUSP00000114665
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl913,719,091 - 13,738,348 (-)Ensembl
GRCm38.p6 Ensembl913,807,795 - 13,827,052 (-)Ensembl
Ensembl Acc Id: ENSMUST00000148904
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl913,724,352 - 13,730,241 (-)Ensembl
GRCm38.p6 Ensembl913,813,056 - 13,818,945 (-)Ensembl
Ensembl Acc Id: ENSMUST00000150893   ⟹   ENSMUSP00000115338
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl913,720,112 - 13,729,961 (-)Ensembl
GRCm38.p6 Ensembl913,808,816 - 13,818,665 (-)Ensembl
Ensembl Acc Id: ENSMUST00000151878   ⟹   ENSMUSP00000116847
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl913,722,016 - 13,730,205 (-)Ensembl
GRCm38.p6 Ensembl913,810,720 - 13,818,909 (-)Ensembl
RefSeq Acc Id: NM_001310721   ⟹   NP_001297650
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39913,719,079 - 13,738,403 (-)NCBI
GRCm38913,807,783 - 13,827,107 (-)NCBI
Sequence:
RefSeq Acc Id: NM_026665   ⟹   NP_080941
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39913,719,084 - 13,738,403 (-)NCBI
GRCm38913,807,788 - 13,827,107 (-)NCBI
MGSCv37913,612,232 - 13,631,537 (-)RGD
Celera911,086,224 - 11,105,543 (-)ENTREZGENE
cM Map9 ENTREZGENE
Sequence:
RefSeq Acc Id: NR_037622
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39913,719,084 - 13,738,349 (-)NCBI
GRCm38913,807,788 - 13,827,053 (-)NCBI
Celera911,086,224 - 11,105,543 (-)ENTREZGENE
cM Map9 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006510649   ⟹   XP_006510712
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39913,717,979 - 13,738,628 (-)NCBI
GRCm38913,807,791 - 13,827,232 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017313667   ⟹   XP_017169156
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39913,719,087 - 13,738,373 (-)NCBI
GRCm38913,807,791 - 13,826,931 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030244681   ⟹   XP_030100541
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39913,717,979 - 13,737,928 (-)NCBI
GRCm38913,807,791 - 13,826,632 (-)NCBI
Sequence:
RefSeq Acc Id: XR_001779042
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39913,719,087 - 13,738,698 (-)NCBI
GRCm38913,807,802 - 13,827,407 (-)NCBI
Sequence:
RefSeq Acc Id: NP_080941   ⟸   NM_026665
- Peptide Label: isoform 1
- Sequence:
RefSeq Acc Id: XP_006510712   ⟸   XM_006510649
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: NP_001297650   ⟸   NM_001310721
- Peptide Label: isoform 2
- Sequence:
RefSeq Acc Id: XP_017169156   ⟸   XM_017313667
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_030100541   ⟸   XM_030244681
- Peptide Label: isoform X2
Ensembl Acc Id: ENSMUSP00000115338   ⟸   ENSMUST00000150893
Ensembl Acc Id: ENSMUSP00000114940   ⟸   ENSMUST00000144484
Ensembl Acc Id: ENSMUSP00000119081   ⟸   ENSMUST00000124883
Ensembl Acc Id: ENSMUSP00000116931   ⟸   ENSMUST00000147115
Ensembl Acc Id: ENSMUSP00000034398   ⟸   ENSMUST00000034398
Ensembl Acc Id: ENSMUSP00000116847   ⟸   ENSMUST00000151878
Ensembl Acc Id: ENSMUSP00000114665   ⟸   ENSMUST00000148086
Ensembl Acc Id: ENSMUSP00000116713   ⟸   ENSMUST00000134746
Ensembl Acc Id: ENSMUSP00000114749   ⟸   ENSMUST00000142494
Protein Domains
Cep57 centrosome localisation   Cep57 centrosome microtubule-binding

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8CEE0-F1-model_v2 AlphaFold Q8CEE0 1-500 view protein structure

Promoters
RGD ID:6844315
Promoter ID:MM_KWN:56373
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   Brain
Transcripts:OTTMUST00000083921
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36913,615,166 - 13,615,666 (-)MPROMDB
RGD ID:6844316
Promoter ID:MM_KWN:56374
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   Kidney
Transcripts:UC009OEA.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36913,617,556 - 13,618,342 (-)MPROMDB
RGD ID:6844314
Promoter ID:MM_KWN:56375
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour
Transcripts:OTTMUST00000083917
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36913,621,291 - 13,621,791 (-)MPROMDB
RGD ID:6844317
Promoter ID:MM_KWN:56378
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   ES_Cell,   MEF_B4,   MEF_B6
Transcripts:OTTMUST00000083911,   OTTMUST00000083912,   OTTMUST00000083913,   OTTMUST00000083914,   OTTMUST00000083920,   OTTMUST00000083922,   UC009OED.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36913,631,291 - 13,632,537 (-)MPROMDB
RGD ID:8668798
Promoter ID:EPDNEW_M12430
Type:initiation region
Name:Cep57_1
Description:Mus musculus centrosomal protein 57 , transcript variant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38913,826,994 - 13,827,054EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1915551 AgrOrtholog
Ensembl Genes ENSMUSG00000031922 Ensembl, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000034398.12 UniProtKB/Swiss-Prot
  ENSMUST00000124883.8 UniProtKB/Swiss-Prot
  ENSMUST00000134746.8 UniProtKB/TrEMBL
  ENSMUST00000142494.8 UniProtKB/TrEMBL
  ENSMUST00000144484.2 UniProtKB/TrEMBL
  ENSMUST00000147115.8 UniProtKB/TrEMBL
  ENSMUST00000148086.8 UniProtKB/Swiss-Prot
  ENSMUST00000150893.8 UniProtKB/TrEMBL
  ENSMUST00000151878.2 UniProtKB/TrEMBL
Gene3D-CATH 1.20.58.90 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Centrosomal_MT-associated UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Cep57_CLD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Cep57_MT-bd_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:74360 UniProtKB/Swiss-Prot
MGD MGI:1915551 ENTREZGENE
NCBI Gene 3110002L15Rik ENTREZGENE
PANTHER PTHR19336:SF11 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  UNCHARACTERIZED DUF1167 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Cep57_CLD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Cep57_MT_bd UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen 3110002L15Rik PhenoGen
UniProt A0PJD7_MOUSE UniProtKB/TrEMBL
  B8JJE7_MOUSE UniProtKB/TrEMBL
  B8JJF0_MOUSE UniProtKB/TrEMBL
  CEP57_MOUSE UniProtKB/Swiss-Prot
  D6RDE1_MOUSE UniProtKB/TrEMBL
  D6RDR1_MOUSE UniProtKB/TrEMBL
  D6RH89_MOUSE UniProtKB/TrEMBL
  F7BGJ9_MOUSE UniProtKB/TrEMBL
UniProt Secondary B8JJE6 UniProtKB/Swiss-Prot
  Q6ZQJ3 UniProtKB/Swiss-Prot
  Q7TN18 UniProtKB/Swiss-Prot
  Q80X65 UniProtKB/Swiss-Prot
  Q810F2 UniProtKB/Swiss-Prot
  Q9D4J4 UniProtKB/Swiss-Prot
  Q9D5S4 UniProtKB/Swiss-Prot
  Q9D5W5 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2024-08-21 3110002L15Rik  RIKEN cDNA 3110002L15 gene  Cep57  centrosomal protein 57  Symbol and/or name change 5135510 APPROVED