Tecta (tectorin alpha) - Rat Genome Database

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Gene: Tecta (tectorin alpha) Mus musculus
Analyze
Symbol: Tecta
Name: tectorin alpha
RGD ID: 1320370
MGI Page MGI
Description: An extracellular matrix structural constituent. Acts upstream of or within auditory receptor cell stereocilium organization. Located in extracellular matrix. Is expressed in inner ear. Used to study autosomal dominant nonsyndromic deafness 12. Human ortholog(s) of this gene implicated in autosomal dominant nonsyndromic deafness 12; autosomal recessive nonsyndromic deafness 21; and sensorineural hearing loss. Orthologous to human TECTA (tectorin alpha).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: [a]-tectorin; alpha-tectorin; Tct; Tctna
RGD Orthologs
Human
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Related Pseudogenes: Gm21925  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39942,240,918 - 42,312,986 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl942,240,915 - 42,311,225 (-)EnsemblGRCm39 Ensembl
GRCm38942,329,622 - 42,401,690 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl942,329,619 - 42,399,929 (-)EnsemblGRCm38mm10GRCm38
MGSCv37942,137,705 - 42,208,012 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36942,080,617 - 42,150,924 (-)NCBIMGSCv36mm8
Celera939,577,992 - 39,648,032 (-)NCBICelera
Cytogenetic Map9A5.1NCBI
cM Map923.63NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. MGDs mouse GO annotations MGD data from the GO Consortium
2. MGD IEA MGD IEA
3. An alpha-tectorin gene defect causes a newly identified autosomal recessive form of sensorineural pre-lingual non-syndromic deafness, DFNB21. Mustapha M, etal., Hum Mol Genet. 1999 Mar;8(3):409-12.
4. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
5. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
6. Mouse MP Annotation Import Pipeline RGD automated import pipeline
7. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
8. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
9. Mutations in the human alpha-tectorin gene cause autosomal dominant non-syndromic hearing impairment. Verhoeven K, etal., Nat Genet. 1998 May;19(1):60-2.
Additional References at PubMed
PMID:9079715   PMID:9503015   PMID:10023815   PMID:10349636   PMID:11042159   PMID:11076861   PMID:11087000   PMID:11217851   PMID:11711860   PMID:11933161   PMID:11972037   PMID:12477932  
PMID:14523068   PMID:15995703   PMID:16141072   PMID:16141073   PMID:16141228   PMID:17220887   PMID:18452040   PMID:18516034   PMID:18849963   PMID:20142329   PMID:20803598   PMID:20856818  
PMID:21081075   PMID:21165971   PMID:21267068   PMID:21368133   PMID:21575588   PMID:21873635   PMID:22544735   PMID:22808246   PMID:23536097   PMID:23614009   PMID:24363064   PMID:24376553  
PMID:24655516   PMID:25080593   PMID:25624266   PMID:26806019   PMID:27488636   PMID:28935705   PMID:29874579   PMID:30627650   PMID:30801007   PMID:31776257   PMID:31807709   PMID:31913121  
PMID:32492250   PMID:35451126   PMID:36384119   PMID:37279265   PMID:37368868  


Genomics

Comparative Map Data
Tecta
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39942,240,918 - 42,312,986 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl942,240,915 - 42,311,225 (-)EnsemblGRCm39 Ensembl
GRCm38942,329,622 - 42,401,690 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl942,329,619 - 42,399,929 (-)EnsemblGRCm38mm10GRCm38
MGSCv37942,137,705 - 42,208,012 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36942,080,617 - 42,150,924 (-)NCBIMGSCv36mm8
Celera939,577,992 - 39,648,032 (-)NCBICelera
Cytogenetic Map9A5.1NCBI
cM Map923.63NCBI
TECTA
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3811121,101,243 - 121,191,490 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl11121,101,243 - 121,191,490 (+)EnsemblGRCh38hg38GRCh38
GRCh3711120,971,952 - 121,062,199 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3611120,478,585 - 120,566,725 (+)NCBINCBI36Build 36hg18NCBI36
Build 3411120,478,584 - 120,566,725NCBI
Celera11118,132,830 - 118,220,699 (+)NCBICelera
Cytogenetic Map11q23.3NCBI
HuRef11116,913,441 - 117,001,973 (+)NCBIHuRef
CHM1_111120,860,789 - 120,948,696 (+)NCBICHM1_1
T2T-CHM13v2.011121,124,974 - 121,216,595 (+)NCBIT2T-CHM13v2.0
Tecta
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8851,604,974 - 51,676,745 (-)NCBIGRCr8
mRatBN7.2842,707,962 - 42,779,726 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl842,707,962 - 42,779,707 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx848,201,774 - 48,273,754 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0846,480,455 - 46,552,429 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0844,348,035 - 44,420,015 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0846,603,728 - 46,675,658 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl846,603,728 - 46,675,544 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0845,076,279 - 45,150,292 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4845,306,930 - 45,383,590 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1845,315,694 - 45,392,191 (-)NCBI
Celera842,301,009 - 42,373,197 (-)NCBICelera
Cytogenetic Map8q22NCBI
Tecta
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541222,062,618 - 22,131,442 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541222,062,618 - 22,132,037 (+)NCBIChiLan1.0ChiLan1.0
TECTA
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1512,879,963 - 12,949,211 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl512,879,951 - 12,949,147 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha512,934,828 - 13,090,846 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0512,825,291 - 12,981,682 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl512,825,284 - 12,895,918 (-)EnsemblROS_Cfam_1.0 Ensembl
ROS_Cfam_1.0 Ensembl512,908,607 - 12,981,239 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1512,945,862 - 13,101,569 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0512,867,901 - 13,023,891 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0512,906,575 - 13,062,644 (-)NCBIUU_Cfam_GSD_1.0
LOC101975324
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947102,890,261 - 103,030,533 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365425,811,660 - 5,869,145 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0 EnsemblNW_0049365425,884,624 - 5,951,260 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365425,884,624 - 5,951,260 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TECTA
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl948,120,837 - 48,200,515 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1 Ensembl948,211,798 - 48,286,274 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1948,120,786 - 48,286,275 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2953,362,425 - 53,493,518 (+)NCBISscrofa10.2Sscrofa10.2susScr3
LOC103248666
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11112,520,859 - 112,611,756 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1112,450,183 - 112,511,647 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
ChlSab1.1 Ensembl1112,527,558 - 112,611,850 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604313,467,150 - 13,632,734 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tecta
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248804,041,020 - 4,122,377 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248804,040,402 - 4,122,377 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Tecta
2546 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:757
Count of miRNA genes:327
Interacting mature miRNAs:377
Transcripts:ENSMUST00000042190, ENSMUST00000159603, ENSMUST00000160940
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301782Chol11_mcholesterol 11 (mouse)Not determined92929292963293072Mouse
11532712Sluc39d_msusceptibility to lung cancer 39d (mouse)92558748559587581Mouse
12790986Pcho9_mplasma cholesterol 9 (mouse)93809957572099575Mouse
13504834Hdlq109_mHDL QTL 109 (mouse)91670964150709641Mouse
1357465Vtbt6_mvertebral trabecular bone trait 6 (mouse)Not determined91697884050978943Mouse
13504833Bglu19_mblood glucose level 19 (mouse)9991076843910768Mouse
12790993Adq1_maortic diameter QTL 1 (mouse)91574962749749627Mouse
12790992Arlsq1_maortic root lesion size QTL 1 (mouse)93809957572099575Mouse
10043917Obq37_mobesity QTL 37 (mouse)Not determined91339117547391175Mouse
12790997Adq2_maortic diameter QTL 2 (mouse)91574962749749627Mouse
1301252Etohc3_methanol consumption 3 (mouse)Not determined93503447869034599Mouse
1357709Si5lq3_mserum IGFBP-5 level QTL 3 (mouse)Not determined93311102567111140Mouse
12791002Arlsq2_maortic root lesion size QTL 2 (mouse)93809957572099575Mouse
1301007Pid2_mprion incubation determinant 2 (mouse)Not determined93715336244251323Mouse
1301045Sluc10_msusceptibility to lung cancer 10 (mouse)Not determined92030619754306370Mouse
1357746Vtbt7_mvertebral trabecular bone trait 7 (mouse)Not determined93073991564740021Mouse
1300532Tbs2_mtuberculosis severity 2 (mouse)Not determined91236997046370114Mouse
4141591Cq4_mcholesterol QTL 4 (mouse)Not determined91541175149411890Mouse
1301439Morph2_mmorphine antinociception 2 (mouse)Not determined92015336254153492Mouse
12738415Lfibq8_mliver fibrosis QTL 8 (mouse)94140216245343743Mouse
4142352Lmr17_mleishmaniasis resistance 17 (mouse)Not determined92030619754306370Mouse
12904939Edlmmq8_mextensor digitorum longus muscle mass QTL 8 (mouse)92085274054852740Mouse
1301692Hts_mhypothermia sensitivity (mouse)Not determined93251117266511421Mouse
1558968Tbdr1_mbody temperature response to dietary restriction, QTL 1 (mouse)Not determined93503447869034599Mouse
1300643Pvcan2_mprotection against vaginal candidiasis 2 (mouse)Not determined91994340653943525Mouse
4141071Ath29_matherosclerosis 29 (mouse)Not determined94041959474607925Mouse
4141323Ptnu3_mproteinuria 3 (mouse)Not determined93288970266889836Mouse
10045613Rapop7_mradiation-induced apoptosis 6 (mouse)Not determined93673624349420511Mouse
10043950Pbft5_mpercent body fat 5 (mouse)Not determined92030619754306370Mouse
11532696Sluc39c_msusceptibility to lung cancer 39c (mouse)92558748559587581Mouse
1302180Actd4_mactivity-distance traveled 4 (mouse)Not determined93243456366434857Mouse
4141447Cfmq2_mcystic fibrosis modifier QTL 2 (mouse)Not determined91541175149411890Mouse
11532695Sluc39b_msusceptibility to lung cancer 39b (mouse)92558748559587581Mouse
11532694Sluc39a_msusceptibility to lung cancer 39a (mouse)92558748559587581Mouse
13208563Bmiq8_mbody mass index QTL 8 (mouse)92491129668907282Mouse
11532693Sluc39_msusceptibility to lung cancer 39 (mouse)94064537448351476Mouse
1301421Lgth4_mbody length 4 (mouse)Not determined91541175149411890Mouse
10043867Mtbcq9_mmultiple trait body composition QTL 9 (mouse)Not determined92679642160796552Mouse
1558993Tdmq1_mtype 2 diabetes modifying QTL 1 (mouse)Not determined94041959451808670Mouse
1301972Cocrb8_mcocaine related behavior 8 (mouse)Not determined93503447869034599Mouse
10043987Stheal13_msoft tissue heal 13 (mouse)Not determined92679642160796552Mouse
1558872Ibdq1_minflammatory bowel disease QTL 1 (mouse)Not determined93397884073439255Mouse
1357637Si5lq2_mserum IGFBP-5 level QTL 2 (mouse)Not determined91541175149411890Mouse
12738449Spcq2_msperm count QTL 2 (mouse)93939988573399885Mouse
1301702Brm1_mbrachyury modifier 1 (mouse)Not determined94080504774805204Mouse
1300932Hdlq17_mHDL QTL 17 (mouse)Not determined92679642160796552Mouse
10043971Obq32_mobesity QTL 32 (mouse)Not determined93781952871819528Mouse
12880415V125Dq7_mvitamin D active form serum level QTL 7 (mouse)91601129650011296Mouse
10043847Hdlq89_mHDL QTL 89 (mouse)Not determined92929292963293072Mouse
4141148Cq5_mcholesterol QTL 5 (mouse)Not determined93245242166452546Mouse
12880416V125Dq8_mvitamin D active form serum level QTL 8 (mouse)91601129650011296Mouse
4142042Alpq3_malcohol preference QTL 3 (mouse)Not determined93730619798701707Mouse
1301365Ap5q_malcohol preference 5 QTL (mouse)Not determined93005316464053277Mouse
1357682Phdlc1_mplasma HDL cholesterol 1 (mouse)Not determined93410461942764866Mouse
1301883Skull12_mskull morphology 12 (mouse)Not determined92030619754306370Mouse
11354951Pdcc3_mplasmacytoid dentritic cell compartment 3 (mouse)91574962749749627Mouse
1301501Lmr2_mleishmaniasis resistance 2 (mouse)Not determined93694340650111140Mouse
10043878Adip20_madiposity 20 (mouse)Not determined92725119461251323Mouse

Markers in Region
Tecta  
Mouse AssemblyChrPosition (strand)SourceJBrowse
MGSCv37942,139,101 - 42,140,579UniSTSGRCm37
Celera939,579,388 - 39,580,866UniSTS
Cytogenetic Map9A5.1UniSTS
cM Map925.0UniSTS
UniSTS:495427  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38942,383,718 - 42,384,668UniSTSGRCm38
MGSCv37942,191,801 - 42,192,751UniSTSGRCm37
Celera939,631,842 - 39,632,792UniSTS
Cytogenetic Map9A5.1UniSTS
Tecta  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38942,331,018 - 42,332,496UniSTSGRCm38
MGSCv37942,139,101 - 42,140,579UniSTSGRCm37
Celera939,579,388 - 39,580,866UniSTS
Cytogenetic Map9A5.1UniSTS


Expression


Sequence


Ensembl Acc Id: ENSMUST00000042190   ⟹   ENSMUSP00000040262
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl942,240,918 - 42,311,225 (-)Ensembl
GRCm38.p6 Ensembl942,329,622 - 42,399,929 (-)Ensembl
Ensembl Acc Id: ENSMUST00000159603
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl942,240,915 - 42,255,290 (-)Ensembl
GRCm38.p6 Ensembl942,329,619 - 42,343,994 (-)Ensembl
Ensembl Acc Id: ENSMUST00000160940   ⟹   ENSMUSP00000125370
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl942,240,991 - 42,311,023 (-)Ensembl
GRCm38.p6 Ensembl942,329,695 - 42,399,727 (-)Ensembl
RefSeq Acc Id: NM_001324548   ⟹   NP_001311477
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39942,240,918 - 42,311,243 (-)NCBI
GRCm38942,329,622 - 42,399,947 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001378602   ⟹   NP_001365531
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39942,240,918 - 42,312,986 (-)NCBI
GRCm38942,329,622 - 42,401,690 (-)NCBI
Sequence:
RefSeq Acc Id: NM_009347   ⟹   NP_033373
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39942,240,918 - 42,311,243 (-)NCBI
GRCm38942,329,622 - 42,399,947 (-)NCBI
MGSCv37942,137,705 - 42,208,012 (-)RGD
Celera939,577,992 - 39,648,032 (-)RGD
cM Map9 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006510152   ⟹   XP_006510215
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39942,251,575 - 42,312,064 (-)NCBI
GRCm38942,340,279 - 42,400,174 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036154833   ⟹   XP_036010726
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39942,240,918 - 42,311,508 (-)NCBI
Sequence:
RefSeq Acc Id: XR_004935379
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39942,240,918 - 42,312,063 (-)NCBI
Sequence:
RefSeq Acc Id: NP_033373   ⟸   NM_009347
- Peptide Label: isoform 1 preproprotein
- UniProtKB: E9QNR3 (UniProtKB/Swiss-Prot),   O08523 (UniProtKB/Swiss-Prot),   B7ZWA6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006510215   ⟸   XM_006510152
- Peptide Label: isoform X2
- UniProtKB: B7ZWA6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001311477   ⟸   NM_001324548
- Peptide Label: isoform 2 preproprotein
- UniProtKB: B7ZWA6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001365531   ⟸   NM_001378602
- Peptide Label: isoform 1 prepreprotein precursor
- UniProtKB: O08523 (UniProtKB/Swiss-Prot),   E9QNR3 (UniProtKB/Swiss-Prot),   B7ZWA6 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSMUSP00000125370   ⟸   ENSMUST00000160940
Ensembl Acc Id: ENSMUSP00000040262   ⟸   ENSMUST00000042190
RefSeq Acc Id: XP_036010726   ⟸   XM_036154833
- Peptide Label: isoform X1
- UniProtKB: B7ZWA6 (UniProtKB/TrEMBL)
Protein Domains
NIDO   TIL   VWFC   VWFD   ZP

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-O08523-F1-model_v2 AlphaFold O08523 1-2155 view protein structure


Additional Information

Database Acc Id Source(s)
AGR Gene MGI:109575 AgrOrtholog
Ensembl Genes ENSMUSG00000037705 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000042190 ENTREZGENE
  ENSMUST00000042190.14 UniProtKB/Swiss-Prot
  ENSMUST00000160940 ENTREZGENE
  ENSMUST00000160940.2 UniProtKB/Swiss-Prot
Gene3D-CATH 2.60.40.4100 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Laminin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Zona pellucida, ZP-N domain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Alpha-tectorin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  NIDO_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ser_inhib-like_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TIL_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TILa_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Unchr_dom_Cys-rich UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  VWF_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  VWF_type-D UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZP-C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZP_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZP_dom_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:21683 UniProtKB/Swiss-Prot
MGD MGI:109575 ENTREZGENE
NCBI Gene 21683 ENTREZGENE
PANTHER ALPHA-TECTORIN-RELATED UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR46160:SF3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam NIDO UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PF08742 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TIL UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TILa UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  VWD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Zona_pellucida UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Tecta PhenoGen
PROSITE NIDO UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  VWFD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZP_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZP_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART NIDO UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SM00241 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SM00832 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  VWC_out UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  VWD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF57567 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt B7ZWA6 ENTREZGENE, UniProtKB/TrEMBL
  E9QNR3 ENTREZGENE
  O08523 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary E9QNR3 UniProtKB/Swiss-Prot