Rpl27a (ribosomal protein L27A) - Rat Genome Database

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Gene: Rpl27a (ribosomal protein L27A) Mus musculus
Analyze
Symbol: Rpl27a
Name: ribosomal protein L27A
RGD ID: 1320287
MGI Page MGI
Description: A structural constituent of ribosome. Acts upstream of or within translation. Located in cytosolic ribosome. Part of cytosolic large ribosomal subunit. Is active in synapse. Is expressed in endolymphatic appendage and head. Orthologous to human RPL27A (ribosomal protein L27a).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 60S ribosomal protein L27a; L2; L27; L27'; L27A; L29; large ribosomal subunit protein uL15; MGC107695; MGC66730; ribosomal protein L29 homolog; snoRNA MBI-28
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Related Pseudogenes: Gm11243   Gm14044   Gm14407   Gm15798   Gm17741   Gm19353   Gm46076   Gm6378   Gm7536   Rpl27a-ps1   Rpl27a-ps2   Rpl27a-ps3  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm397109,118,354 - 109,121,967 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl7109,118,354 - 109,121,574 (+)EnsemblGRCm39 Ensembl
GRCm387109,519,195 - 109,522,369 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl7109,519,147 - 109,522,367 (+)EnsemblGRCm38mm10GRCm38
MGSCv377116,662,709 - 116,665,883 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv367109,310,374 - 109,313,532 (+)NCBIMGSCv36mm8
Celera7109,493,120 - 109,496,304 (+)NCBICelera
Cytogenetic Map7E3NCBI
cM Map757.26NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-epigallocatechin 3-gallate  (ISO)
(1->4)-beta-D-glucan  (EXP)
1,2-dichloroethane  (EXP)
1,2-dimethylhydrazine  (EXP)
1-chloro-2,4-dinitrobenzene  (ISO)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-(ethoxymethylene)-2-phenyloxazol-5-one  (ISO)
6-propyl-2-thiouracil  (ISO)
acrolein  (ISO)
alpha-pinene  (ISO)
ammonium chloride  (ISO)
aristolochic acid A  (ISO)
Aroclor 1254  (EXP)
arsenite(3-)  (ISO)
benzo[a]pyrene  (EXP,ISO)
benzo[a]pyrene diol epoxide I  (ISO)
bis(2-chloroethyl) sulfide  (ISO)
bisphenol A  (EXP,ISO)
Bisphenol B  (ISO)
bromobenzene  (ISO)
cadmium dichloride  (ISO)
caffeine  (ISO)
carbon nanotube  (EXP)
CGP 52608  (ISO)
chloropicrin  (ISO)
choline  (EXP)
chromium(6+)  (EXP,ISO)
clofibrate  (EXP)
cobalt dichloride  (ISO)
cyclosporin A  (ISO)
cylindrospermopsin  (EXP)
deoxynivalenol  (ISO)
diuron  (ISO)
dorsomorphin  (ISO)
enzyme inhibitor  (ISO)
ethanol  (EXP)
eugenol  (ISO)
folic acid  (EXP)
gentamycin  (ISO)
hydrogen peroxide  (ISO)
isoprenaline  (EXP)
ivermectin  (ISO)
L-methionine  (EXP)
melphalan  (ISO)
menadione  (ISO)
Mesaconitine  (ISO)
methidathion  (EXP)
methylparaben  (ISO)
methylseleninic acid  (ISO)
miconazole  (EXP)
N-ethyl-N-nitrosourea  (EXP)
N-nitrosodiethylamine  (EXP)
ozone  (ISO)
paracetamol  (EXP)
perfluorodecanoic acid  (ISO)
perfluorononanoic acid  (ISO)
perfluorooctane-1-sulfonic acid  (EXP)
perfluorooctanoic acid  (ISO)
phenanthrene  (ISO)
phenobarbital  (EXP)
phenylmercury acetate  (ISO)
PhIP  (ISO)
potassium chromate  (ISO)
pregnenolone 16alpha-carbonitrile  (EXP)
progesterone  (ISO)
quercetin  (ISO)
rotenone  (ISO)
SB 431542  (ISO)
silicon dioxide  (ISO)
sodium arsenite  (ISO)
tert-butyl hydroperoxide  (ISO)
thapsigargin  (ISO)
thioacetamide  (ISO)
thiram  (ISO)
titanium dioxide  (EXP)
Tributyltin oxide  (ISO)
trichloroethene  (EXP)
triphenyl phosphate  (ISO)
tungsten  (EXP)
valproic acid  (EXP,ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
abnormal bone marrow cell physiology  (IAGP)
abnormal cerebellar granule layer morphology  (IAGP)
abnormal cerebellar layer morphology  (IAGP)
abnormal cerebellum external granule cell layer morphology  (IAGP)
abnormal epidermal melanocyte morphology  (IAGP)
abnormal hematopoietic system morphology/development  (IAGP)
abnormal Purkinje cell morphology  (IAGP)
abnormal tumor incidence  (IAGP)
anemia  (IAGP)
ataxia  (IAGP)
decreased body weight  (IAGP)
decreased bone marrow cell number  (IAGP)
decreased cerebellar granule cell number  (IAGP)
decreased erythrocyte cell number  (IAGP)
decreased hematopoietic cell number  (IAGP)
decreased hematopoietic stem cell number  (IAGP)
decreased leukocyte cell number  (IAGP)
decreased lymphoma incidence  (IAGP)
ectopic Purkinje cell  (IAGP)
embryonic lethality, complete penetrance  (IAGP)
hyperpigmentation  (IAGP)
impaired coordination  (IAGP)
increased ear pigmentation  (IAGP)
increased foot pad pigmentation  (IAGP)
increased hematopoietic stem cell proliferation  (IAGP)
increased metastatic potential  (IAGP)
increased mortality induced by gamma-irradiation  (IAGP)
increased tail pigmentation  (IAGP)
increased tumor latency  (IAGP)
increased tumor-free survival time  (IAGP)
no abnormal phenotype detected  (IAGP)
pancytopenia  (IAGP)
postnatal growth retardation  (IAGP)
postnatal lethality, incomplete penetrance  (IAGP)
prenatal lethality, complete penetrance  (IAGP)
small cerebellum  (IAGP)
small spleen  (IAGP)
small thymus  (IAGP)
thin external granule cell layer  (IAGP)
thrombocytopenia  (IAGP)
References

References - curated
# Reference Title Reference Citation
1. Structures of the human and Drosophila 80S ribosome. Anger AM, etal., Nature. 2013 May 2;497(7447):80-5. doi: 10.1038/nature12104.
2. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
3. MGDs mouse GO annotations MGD data from the GO Consortium
4. Identification and analysis of genes from the mouse otic vesicle and their association with developmental subprocesses through in situ hybridization. Powles N, etal., Dev Biol 2004 Apr 1;268(1):24-38.
5. Mouse MP Annotation Import Pipeline RGD automated import pipeline
6. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:2434927   PMID:2643099   PMID:9507200   PMID:10349636   PMID:10449908   PMID:10512203   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11387227   PMID:11514592   PMID:11528126  
PMID:11528127   PMID:11812828   PMID:12466851   PMID:12477932   PMID:12955145   PMID:14610273   PMID:15782199   PMID:15840001   PMID:16141072   PMID:16141073   PMID:18799693   PMID:21267068  
PMID:21529712   PMID:21674502   PMID:21677750   PMID:21873635   PMID:22354994   PMID:24457600   PMID:25211037   PMID:25901680   PMID:27113764   PMID:28378742   PMID:30457570   PMID:30550785  
PMID:32325033   PMID:32434143   PMID:32554809   PMID:36114006   PMID:36417873   PMID:36517592  


Genomics

Comparative Map Data
Rpl27a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm397109,118,354 - 109,121,967 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl7109,118,354 - 109,121,574 (+)EnsemblGRCm39 Ensembl
GRCm387109,519,195 - 109,522,369 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl7109,519,147 - 109,522,367 (+)EnsemblGRCm38mm10GRCm38
MGSCv377116,662,709 - 116,665,883 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv367109,310,374 - 109,313,532 (+)NCBIMGSCv36mm8
Celera7109,493,120 - 109,496,304 (+)NCBICelera
Cytogenetic Map7E3NCBI
cM Map757.26NCBI
RPL27A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38118,682,792 - 8,689,872 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl118,682,788 - 8,714,759 (+)EnsemblGRCh38hg38GRCh38
GRCh37118,704,339 - 8,711,419 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36118,660,571 - 8,667,995 (+)NCBINCBI36Build 36hg18NCBI36
Build 34118,660,914 - 8,663,969NCBI
Celera118,821,627 - 8,829,051 (+)NCBICelera
Cytogenetic Map11p15.4NCBI
HuRef118,371,987 - 8,379,412 (+)NCBIHuRef
CHM1_1118,702,911 - 8,710,345 (+)NCBICHM1_1
T2T-CHM13v2.0118,764,546 - 8,771,626 (+)NCBIT2T-CHM13v2.0
Rpl27a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81172,971,957 - 172,977,591 (+)NCBIGRCr8
mRatBN7.21163,539,732 - 163,542,771 (+)NCBImRatBN7.2mRatBN7.2
UTH_Rnor_SHR_Utx1171,878,344 - 171,881,270 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01179,064,391 - 179,067,317 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01171,747,016 - 171,749,942 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01174,132,798 - 174,135,816 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1174,132,798 - 174,135,816 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01181,121,468 - 181,124,486 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41167,115,389 - 167,118,407 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11167,225,785 - 167,228,530 (+)NCBI
Celera1161,441,403 - 161,444,421 (+)NCBICelera
Cytogenetic Map1q33NCBI
Rpl27a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495541424,461,997 - 24,464,828 (+)NCBIChiLan1.0ChiLan1.0
RPL27A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2911,113,295 - 11,116,519 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11111,072,026 - 11,075,190 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0118,807,139 - 8,810,192 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1118,549,367 - 8,552,844 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl118,549,367 - 8,552,845 (+)Ensemblpanpan1.1panPan2
RPL27A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12132,099,792 - 32,102,761 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2132,099,792 - 32,102,754 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2131,668,361 - 31,671,323 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02132,973,385 - 32,976,355 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2132,973,395 - 32,977,033 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12132,242,588 - 32,245,549 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02132,408,715 - 32,411,677 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02132,702,260 - 32,705,221 (+)NCBIUU_Cfam_GSD_1.0
Rpl27a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494753,309,640 - 53,314,976 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365289,346,592 - 9,348,482 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365289,343,620 - 9,348,935 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RPL27A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl9707,693 - 711,219 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.19708,531 - 712,410 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.29777,352 - 781,221 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RPL27A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1156,112,593 - 56,115,615 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl156,112,635 - 56,115,639 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666038153,801,569 - 153,805,824 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rpl27a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624766833,503 - 836,185 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624766833,422 - 836,185 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:847
Count of miRNA genes:495
Interacting mature miRNAs:583
Transcripts:ENSMUST00000053298, ENSMUST00000132877, ENSMUST00000143107, ENSMUST00000149143, ENSMUST00000156921, ENSMUST00000174303
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357460Vtbt4_mvertebral trabecular bone trait 4 (mouse)Not determined7101693381135693530Mouse
25314307Mlh1fc2_mMLH1 foci count 2 (mouse)76502999133501729Mouse
27226781Tibl3_mtibia length 3, 5 week (mouse)774849748122199223Mouse
27226778Femd11_mfemur midshaft diameter 11, 16 week (mouse)756949748134001729Mouse
1301781Capsq3_mcapsaicin sensitivity related QTL 3 (mouse)Not determined787143137119485380Mouse
14746989Manh62_mmandible shape 62 (mouse)775742528109742528Mouse
11039524Tbbr3_mTrypanosoma brucei brucei response 3 (mouse)7100750722134750843Mouse
27226769Tibl12_mtibia length 12, 10 week (mouse)787249208126499172Mouse
25394573Skmw62_mskeletal muscle weight 62, gastroc (mouse)7106893715110612309Mouse
10043926Bw1n_mbody weight 1 in NSY (mouse)Not determined745161966118693530Mouse
27226765Tibl18_mtibia length 18, 16 week (mouse)781849748126499172Mouse
27226763Feml20_mfemur length 20, 16 week (mouse)785049208124199223Mouse
4142500Morq1_mmodifier of Rs1 QTL 1 (mouse)Not determined80551681114551791Mouse
1301647Elpt_melevated leptin (mouse)Not determined786500186120500329Mouse
13208555Lgth10_mbody length 10 (mouse)751649748125599172Mouse
26884408Bzwq13_mbi-zygomatic width QTL 13, 16 week (mouse)761749748121399223Mouse
1301937Skull10_mskull morphology 10 (mouse)Not determined791482996125483156Mouse
1300528Ssial3_msusceptibility to sialadenitis 3 (mouse)Not determined793391848127392041Mouse
5491192Mobq1_mmultigenic obesity QTL 1 (mouse)Not determined7105250663139250811Mouse
1301566Adip3_madiposity 3 (mouse)Not determined775394215109394346Mouse
26884398Humsd6_mhumerus midshaft diameter 6, 16 week (mouse)778649748136901729Mouse
1301158Eae4_msusceptibility to experimental allergic encephalomyelitis 4 (mouse)Not determined719147398141919804Mouse
10412199Sst2_msusceptibility to tuberculosis 2 (mouse)Not determined718728794119485380Mouse
27226790Feml15_mfemur length 15, 10 week (mouse)787249208126499172Mouse
13524852Asrq7a_macoustic startle response 7a (mouse)7105350008139350008Mouse
13524850Asrq7_macoustic startle response 7 (mouse)798394974132394974Mouse
1302062Stheal6_msoft tissue heal 6 (mouse)Not determined787043932121044066Mouse
4141056Lskcn2_mLSK cell number 2 (mouse)Not determined108482996118693530Mouse
26884440Sklq4_mskull length QTL 4, 5 week (mouse)765249748126499172Mouse
27095903Scvln10_msacral vertebrae length 2, 10 week (mouse)781449748126499172Mouse
27226715Metcl3_mmetatarsal-calcaneal length 3, 5 week (mouse)767849748119499223Mouse
26884444Sklq8_mskull length QTL 8, 10 week (mouse)767849748124199223Mouse
25823170Hrsq7_mhost response to SARS QTL 7, log titer (mouse)754819589116822815Mouse
1301082Bbaa16_mB.burgdorferi-associated arthritis 16 (mouse)Not determined736280015116416877Mouse
10412110Cctq1_mcentral corneal thickness QTL 1 (mouse)Not determined780551681114551791Mouse
12792978Fbmd3_mfemoral bone mineral density 3, females only (mouse)77050288142367832Mouse
1301447Fembm3_mfemoral bone morphometry 3 (mouse)Not determined7100993261134993342Mouse
10412104Tons2_mtongue size 2 (mouse)Not determined799837716133837716Mouse
1301188Heal6_mwound healing/regeneration 6 (mouse)Not determined787043932121044066Mouse
4142312Nilac4_mnicotine induced locomotor activity 4 (mouse)Not determined7102485219136485380Mouse
27226751Femd5_mfemur midshaft diameter 5, 10 week (mouse)753249748143153737Mouse
27095933Ulnl3_mulna length 3, 5 week (mouse)773149748143153737Mouse
1301105Cfld4_mcystic fibrosis lung disease 4 (mouse)Not determined7101693381135693530Mouse
1300721Cfbw3_mcystic fibrosis body weight 3 (mouse)Not determined7101693381135693530Mouse
13524524Bodwtq6_mbody wweight QTL 6 (mouse)7107245693113055693Mouse
27226745Metcl9_mmetatarsal-calcaneal length 9, 10 week (mouse)774849748122199223Mouse
27095930Ulnl10_mulna length 10, 16 week (mouse)780849748126699172Mouse
27095923Pglq3_mpelvic girdle length QTL 3, 5 week (mouse)781249748124199223Mouse
27095916Scvln15_msacral vertebrae length 2, 16 week (mouse)761749748123699223Mouse
1357664Nba3_mNew Zealand Black autoimmunity 3 (mouse)Not determined791482996125483156Mouse
1301478Eae26_msusceptibility to experimental allergic encephalomyelitis 26 (mouse)Not determined798164922132165010Mouse
26884451Sklq14_mskull length QTL 14, 16 week (mouse)767849748124999172Mouse
27095910Pglq13_mpelvic girdle length QTL 13, 16 week (mouse)773049748125699172Mouse
13463473Hbbcq4_mhemoglobin concentration QTL 4 (mouse)787043932121044066Mouse
25394559Skmw63_mskeletal muscle weight 63, TA (mouse)7108791458110612309Mouse
27095907Scvln4_msacral vertebrae length 2, 5 week (mouse)769949748120499223Mouse
1301997Cia7_mcollagen induced arthritis QTL 7 (mouse)Not determined785365595112533819Mouse
25394557Skmw64_mskeletal muscle weight 64, soleus (mouse)7108715780114592736Mouse
35673311Ari6_mantibody response to influenza 6, day 15, IgG2b (mouse)7108699207115099235Mouse
25394556Skmw65_mskeletal muscle weight 65, EDL (mouse)7109059337110612309Mouse


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_011975 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AA253983 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB020237 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC124457 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ307670 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK007837 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK008531 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK010286 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK011361 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK138110 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK150907 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK167792 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK167915 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK213005 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BB734594 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC056958 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC081430 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC086939 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466531 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CJ072009 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X05021 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSMUST00000053298
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7109,118,420 - 109,120,973 (+)Ensembl
GRCm38.p6 Ensembl7109,519,213 - 109,521,766 (+)Ensembl
RefSeq Acc Id: ENSMUST00000132877
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7109,118,403 - 109,120,360 (+)Ensembl
GRCm38.p6 Ensembl7109,519,196 - 109,521,153 (+)Ensembl
RefSeq Acc Id: ENSMUST00000143107   ⟹   ENSMUSP00000123410
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7109,118,354 - 109,121,574 (+)Ensembl
GRCm38.p6 Ensembl7109,519,147 - 109,522,367 (+)Ensembl
RefSeq Acc Id: ENSMUST00000149143
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7109,118,406 - 109,119,386 (+)Ensembl
GRCm38.p6 Ensembl7109,519,199 - 109,520,179 (+)Ensembl
RefSeq Acc Id: ENSMUST00000156921   ⟹   ENSMUSP00000134650
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7109,118,427 - 109,119,804 (+)Ensembl
GRCm38.p6 Ensembl7109,519,220 - 109,520,597 (+)Ensembl
RefSeq Acc Id: ENSMUST00000174303
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7109,118,477 - 109,119,145 (+)Ensembl
GRCm38.p6 Ensembl7109,519,270 - 109,519,938 (+)Ensembl
RefSeq Acc Id: NM_011975   ⟹   NP_036105
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397109,118,354 - 109,121,967 (+)NCBI
GRCm387109,519,195 - 109,522,369 (+)ENTREZGENE
MGSCv377116,662,709 - 116,665,883 (+)RGD
Celera7109,493,120 - 109,496,304 (+)RGD
cM Map7 ENTREZGENE
Sequence:
RefSeq Acc Id: NP_036105   ⟸   NM_011975
- UniProtKB: Q9CQ16 (UniProtKB/Swiss-Prot),   Q9R1X6 (UniProtKB/Swiss-Prot),   P14115 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSMUSP00000123410   ⟸   ENSMUST00000143107
RefSeq Acc Id: ENSMUSP00000134650   ⟸   ENSMUST00000156921

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P14115-F1-model_v2 AlphaFold P14115 1-148 view protein structure

Promoters
RGD ID:8665187
Promoter ID:EPDNEW_M10625
Type:initiation region
Name:Rpl27a_1
Description:Mus musculus ribosomal protein L27A , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm387109,519,198 - 109,519,258EPDNEW
RGD ID:6841946
Promoter ID:MM_KWN:52245
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:OTTMUST00000054734,   OTTMUST00000054735,   OTTMUST00000054736,   OTTMUST00000054737,   OTTMUST00000054738
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv367116,661,681 - 116,662,827 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1347076 AgrOrtholog
Ensembl Genes ENSMUSG00000046364 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000143107 ENTREZGENE
  ENSMUST00000143107.2 UniProtKB/Swiss-Prot
  ENSMUST00000156921.2 UniProtKB/TrEMBL
Gene3D-CATH 3.100.10.10 UniProtKB/Swiss-Prot
  4.10.990.10 UniProtKB/Swiss-Prot
InterPro L18e/L15P_sf UniProtKB/Swiss-Prot
  Rbsml_prot_L15/27a_N UniProtKB/Swiss-Prot
  Ribosomal_L15 UniProtKB/Swiss-Prot
  Ribosomal_L15_CS UniProtKB/Swiss-Prot
  Ribosomal_L18e/L15P UniProtKB/Swiss-Prot
KEGG Report mmu:26451 UniProtKB/Swiss-Prot
MGD MGI:1347076 ENTREZGENE
NCBI Gene 26451 ENTREZGENE
PANTHER 60S RIBOSOMAL PROTEIN L27A UniProtKB/Swiss-Prot
  60S RIBOSOMAL PROTEIN L27A UniProtKB/Swiss-Prot
Pfam Ribosomal_L27A UniProtKB/Swiss-Prot
PhenoGen Rpl27a PhenoGen
PROSITE RIBOSOMAL_L15 UniProtKB/Swiss-Prot
Superfamily-SCOP SSF52080 UniProtKB/Swiss-Prot
UniProt G3UZV5_MOUSE UniProtKB/TrEMBL
  P14115 ENTREZGENE
  Q9CQ16 ENTREZGENE
  Q9R1X6 ENTREZGENE
  RL27A_MOUSE UniProtKB/Swiss-Prot
UniProt Secondary Q9CQ16 UniProtKB/Swiss-Prot
  Q9R1X6 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2012-10-16 Rpl27a  ribosomal protein L27A    ribosomal protein L27a  Symbol and/or name change 5135510 APPROVED