Afg3l1 (AFG3-like AAA ATPase 1) - Rat Genome Database

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Gene: Afg3l1 (AFG3-like AAA ATPase 1) Mus musculus
Analyze
Symbol: Afg3l1
Name: AFG3-like AAA ATPase 1
RGD ID: 1320215
MGI Page MGI
Description: Predicted to enable metalloendopeptidase activity. Involved in protein processing. Acts upstream of or within cristae formation; mitochondrial fusion; and mitochondrial protein processing. Located in mitochondrial inner membrane. Part of m-AAA complex. Orthologous to human AFG3L1P (AFG3 like matrix AAA peptidase subunit 1, pseudogene).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 1700047G05Rik; 3110061K15Rik; AFG3(ATPase family gene 3)-like 1; AFG3-like protein 1; mitochondrial inner membrane m-AAA protease component AFG3L1
RGD Orthologs
Human
Alliance Orthologs
More Info more info ...
Related Pseudogenes: Gm18885  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm398124,204,601 - 124,230,655 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl8124,204,642 - 124,230,655 (+)EnsemblGRCm39 Ensembl
GRCm388123,477,862 - 123,503,916 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl8123,477,903 - 123,503,916 (+)EnsemblGRCm38mm10GRCm38
MGSCv378126,001,762 - 126,027,816 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv368126,363,993 - 126,390,006 (+)NCBIMGSCv36mm8
Celera8127,717,625 - 127,744,063 (+)NCBICelera
Cytogenetic Map8E1NCBI
cM Map872.1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. A collection of cDNAs enriched in upper cortical layers of the embryonic mouse brain. Garcia-Frigola C, etal., Brain Res Mol Brain Res 2004 Mar 30;122(2):133-50.
2. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
3. MGDs mouse GO annotations MGD data from the GO Consortium
4. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:7798170   PMID:8889548   PMID:10349636   PMID:11042159   PMID:11076861   PMID:11549317   PMID:12477932   PMID:14610273   PMID:14651853   PMID:15782199   PMID:16141072   PMID:16141073  
PMID:17101804   PMID:18614015   PMID:19656850   PMID:20038678   PMID:21873635   PMID:22544055   PMID:24856930   PMID:27911893   PMID:30989755  


Genomics

Comparative Map Data
Afg3l1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm398124,204,601 - 124,230,655 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl8124,204,642 - 124,230,655 (+)EnsemblGRCm39 Ensembl
GRCm388123,477,862 - 123,503,916 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl8123,477,903 - 123,503,916 (+)EnsemblGRCm38mm10GRCm38
MGSCv378126,001,762 - 126,027,816 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv368126,363,993 - 126,390,006 (+)NCBIMGSCv36mm8
Celera8127,717,625 - 127,744,063 (+)NCBICelera
Cytogenetic Map8E1NCBI
cM Map872.1NCBI
AFG3L1P
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381689,972,580 - 90,000,787 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1689,972,581 - 90,002,161 (+)EnsemblGRCh38hg38GRCh38
GRCh38.p14 Ensembl1689,972,631 - 90,000,668 (+)EnsemblGRCh38hg38GRCh38
GRCh371690,038,988 - 90,067,195 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361688,566,489 - 88,594,696 (+)NCBINCBI36Build 36hg18NCBI36
Build 341688,566,501 - 88,590,532NCBI
Celera1675,104,531 - 75,132,803 (+)NCBICelera
Cytogenetic Map16q24.3NCBI
HuRef1675,731,879 - 75,759,783 (+)NCBIHuRef
CHM1_11691,450,872 - 91,478,981 (+)NCBICHM1_1
T2T-CHM13v2.01696,058,822 - 96,087,077 (+)NCBIT2T-CHM13v2.0

Variants

.
Variants in Afg3l1
1214 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:2055
Count of miRNA genes:713
Interacting mature miRNAs:878
Transcripts:ENSMUST00000001520, ENSMUST00000098320, ENSMUST00000133606, ENSMUST00000146795, ENSMUST00000150872, ENSMUST00000152469
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357494Obsty2_mobesity 2 (mouse)Not determined896245241129745061Mouse
4141435Fbtq3_mfemoral bone trait QTL 3 (mouse)Not determined8100965309130127694Mouse
12904960Gmmq6_mgastrocnemius muscle mass QTL 6 (mouse)8111481497130127694Mouse
11252141Fdr2_mfat response to dietary restriction 2 (mouse)898390634130127694Mouse
1302105Im1_mImmunoregulatory 1 (mouse)Not determined899828531130127694Mouse
12880431Fgf23lq2_mFGF23 serum level QTL 2 (mouse)897626632130127694Mouse
1301080Sluc9_msusceptibility to lung cancer 9 (mouse)Not determined899828531130127694Mouse
10412274Leci1_mleukocyte endothelial cell interactions 1 (mouse)Not determined8110415083130127694Mouse
26884375Skwq2_mskull length QTL 2, 5 week (mouse)8120726739130027694Mouse
12904938Edlmmq7_mextensor digitorum longus muscle mass QTL 7 (mouse)8111481497130127694Mouse
10412273Fcd1_mfunctional capillary density 1 (mouse)Not determined8110415083130127694Mouse
27226796Scvln16_msacral vertebrae length 2, 16 week (mouse)889726628130027694Mouse
14746994Manh65_mmandible shape 65 (mouse)8106489629130127694Mouse
27095912Pglq14_mpelvic girdle length QTL 14, 16 week (mouse)874126628126826739Mouse
4141546Mrdq3_mmodifier of retinal degeneration QTL 3 (mouse)Not determined114439420126055880Mouse
1301316Dntcs1_mdental caries susceptibility 1 (mouse)Not determined8103443553127781786Mouse
1357708Orq1_movulation rate QTL 1 (mouse)Not determined871740461124622354Mouse
4142023W3q5_mweight 3 weeks QTL 5 (mouse)Not determined71740461124622354Mouse
1301481Lith11_mlithogenic gene 11 (mouse)Not determined898563635130127694Mouse
11532692Sluc38a_msusceptibility to lung cancer 38a (mouse)8105033977130127694Mouse
11532691Sluc38_msusceptibility to lung cancer 38 (mouse)8105033977130127694Mouse

Markers in Region
UniSTS:236038  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm388123,502,751 - 123,502,974UniSTSGRCm38
MGSCv378126,026,651 - 126,026,874UniSTSGRCm37
Celera8127,742,897 - 127,743,121UniSTS
Cytogenetic Map8E1-E2UniSTS
D10Mit157.2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map6D1UniSTS
Cytogenetic Map16B4UniSTS
Cytogenetic Map18E2UniSTS
Cytogenetic Map4C3UniSTS
Cytogenetic Map7B2UniSTS
Cytogenetic Map4D2.3UniSTS
Cytogenetic Map11E1UniSTS
Cytogenetic Map14E2.2UniSTS
Cytogenetic Map4C7UniSTS
Cytogenetic Map2H4UniSTS
Cytogenetic Map1FUniSTS
Cytogenetic Map6C3UniSTS
Cytogenetic Map11DUniSTS
Cytogenetic Map3G2UniSTS
Cytogenetic Map17A1UniSTS
Cytogenetic Map9F2UniSTS
Cytogenetic Map12F1UniSTS
Cytogenetic Map19C2UniSTS
Cytogenetic Map3BUniSTS
Cytogenetic Map8C1UniSTS
Cytogenetic Map18A2UniSTS
Cytogenetic Map3F2UniSTS
Cytogenetic Map14C3UniSTS
Cytogenetic Map8E1UniSTS
Cytogenetic Map8E2UniSTS
Cytogenetic Map5B1UniSTS
Cytogenetic Map18B1UniSTS
Cytogenetic Map9CUniSTS
Cytogenetic Map14C2UniSTS
Cytogenetic Map6A1UniSTS
Cytogenetic Map10B4UniSTS
Cytogenetic Map13D2.1UniSTS
Cytogenetic Map5E5UniSTS
Cytogenetic Map11B1.3UniSTS
Cytogenetic Map4D1UniSTS
Cytogenetic Map9A5.2UniSTS
Cytogenetic Map3F1UniSTS
Cytogenetic Map17E3UniSTS
Cytogenetic Map11B3UniSTS
Cytogenetic Map1H4UniSTS
Cytogenetic Map6A3UniSTS
Cytogenetic Map5E4-E5UniSTS
Cytogenetic Map15E1UniSTS
Cytogenetic Map13DUniSTS
Cytogenetic Map14BUniSTS
Cytogenetic Map14D1UniSTS
Cytogenetic Map7B4UniSTS
Cytogenetic Map8D3UniSTS
Cytogenetic MapXDUniSTS
Cytogenetic Map17A3.3UniSTS
Cytogenetic Map7E2UniSTS
Cytogenetic Map1H2.3UniSTS
Cytogenetic Map7A2UniSTS
Cytogenetic Map7F3UniSTS
Cytogenetic Map9F1UniSTS
Cytogenetic Map10C1UniSTS
Cytogenetic Map4E2UniSTS
Cytogenetic Map16A1UniSTS
Cytogenetic Map8B3.3UniSTS
Cytogenetic Map8D2UniSTS
Cytogenetic Map3DUniSTS
Cytogenetic Map15D2UniSTS
Cytogenetic Map17B1UniSTS
Cytogenetic Map7A3UniSTS
Cytogenetic Map15F1UniSTS
Cytogenetic Map16B2UniSTS
Cytogenetic Map7CUniSTS
Cytogenetic Map3F2.1UniSTS
Cytogenetic Map6F3UniSTS
Cytogenetic Map1C4UniSTS
Cytogenetic Map11E2UniSTS
Cytogenetic Map11B5UniSTS
Cytogenetic Map9F3UniSTS
Cytogenetic Map2BUniSTS
Cytogenetic Map13B3UniSTS
Cytogenetic Map9A4UniSTS
Cytogenetic Map5A3UniSTS
Cytogenetic Map2H1UniSTS
Cytogenetic Map16B1UniSTS
Cytogenetic Map1A5UniSTS
Cytogenetic Map11CUniSTS
Cytogenetic Map9E1UniSTS
Cytogenetic Map6G1UniSTS
Cytogenetic MapXA2UniSTS
Cytogenetic Map13B1UniSTS
Cytogenetic Map5E2UniSTS
Cytogenetic Map12C1UniSTS
Cytogenetic Map5FUniSTS
Cytogenetic Map4D3UniSTS
Cytogenetic Map10C2UniSTS
Cytogenetic Map9BUniSTS
Cytogenetic Map5G2UniSTS
Cytogenetic Map7F1UniSTS
Cytogenetic Map12C3UniSTS
Cytogenetic Map10A4UniSTS
Cytogenetic Map8A2UniSTS
Cytogenetic Map18A1UniSTS
Cytogenetic Map12A1.1UniSTS
Cytogenetic Map1C2UniSTS
Cytogenetic Map11B2UniSTS
Cytogenetic Map6E3UniSTS
Cytogenetic Map5C3.3UniSTS
Cytogenetic Map1BUniSTS
Cytogenetic Map17A3.1UniSTS
Cytogenetic Map7A1UniSTS
Cytogenetic Map2E5UniSTS
Cytogenetic Map11A1UniSTS
Cytogenetic Map4B1UniSTS
Cytogenetic Map15A2UniSTS
Cytogenetic Map8C3UniSTS
Cytogenetic Map2A3UniSTS
Cytogenetic Map5G3UniSTS
Cytogenetic Map4A3UniSTS
Cytogenetic Map2H3UniSTS
Cytogenetic Map8A1UniSTS
Cytogenetic Map8A1.1UniSTS
Cytogenetic Map16A3UniSTS
Cytogenetic Map10B1UniSTS
Cytogenetic Map19AUniSTS
Cytogenetic Map10A1UniSTS
Cytogenetic Map13D1UniSTS
Cytogenetic Map4A1UniSTS
Cytogenetic Map9A3UniSTS
Cytogenetic Map17CUniSTS
Cytogenetic Map1DUniSTS
Cytogenetic Map5E3UniSTS
Cytogenetic Map15D3UniSTS
Cytogenetic Map2H2UniSTS
Cytogenetic Map7D3UniSTS
Cytogenetic Map2A1UniSTS
Cytogenetic Map14C1UniSTS
Cytogenetic Map14E5UniSTS
Cytogenetic Map10CUniSTS
Cytogenetic Map18B2UniSTS
Cytogenetic Map2F1UniSTS
Cytogenetic Map10D3UniSTS
Cytogenetic Map17A2UniSTS
Cytogenetic Map2C3UniSTS
Cytogenetic Map1C3UniSTS
Cytogenetic Map17B2UniSTS
Cytogenetic Map5B2UniSTS
Cytogenetic Map5G1UniSTS
Cytogenetic Map4C6UniSTS
Cytogenetic Map13C3UniSTS
Cytogenetic Map2E1UniSTS
Cytogenetic Map17A3.2-A3.3UniSTS
Cytogenetic Map19C3UniSTS
Cytogenetic Map7E3UniSTS
Cytogenetic Map13C1UniSTS
Cytogenetic Map9E3.1UniSTS
Cytogenetic Map15E3UniSTS
Cytogenetic Map6B1UniSTS
Cytogenetic MapXE3UniSTS
Cytogenetic Map4C4UniSTS
Cytogenetic Map3E3UniSTS
Cytogenetic Map11A4UniSTS
Cytogenetic Map4C5UniSTS
Cytogenetic Map18B3UniSTS
Cytogenetic Map9A2UniSTS
Cytogenetic Map7E1UniSTS
Cytogenetic Map5D-E1UniSTS
Cytogenetic Map5B3UniSTS
Cytogenetic Map13A2-A3UniSTS
Cytogenetic Map5A2UniSTS
Cytogenetic Map4B3UniSTS
Cytogenetic Map1E4UniSTS
Cytogenetic Map17E4UniSTS
Cytogenetic Map1G2UniSTS
Cytogenetic Map15B3.1UniSTS
Cytogenetic Map12EUniSTS
Cytogenetic MapXA5UniSTS
Cytogenetic Map6A3.3UniSTS
Cytogenetic Map6G3UniSTS
Cytogenetic Map6F2UniSTS
Cytogenetic Map5C1UniSTS
Cytogenetic Map4D2.1UniSTS
Cytogenetic Map4A5UniSTS
Cytogenetic Map3F2.2UniSTS
Cytogenetic Map1E3-E4UniSTS
Cytogenetic Map9F1-F3UniSTS
Cytogenetic Map1C1.1UniSTS
Cytogenetic Map14D2UniSTS
Cytogenetic Map12A2UniSTS
Cytogenetic Map17A3-BUniSTS
Cytogenetic Map7F5UniSTS
Cytogenetic Map14A3UniSTS
Cytogenetic Map5G1.1UniSTS
Cytogenetic MapXF2-F4UniSTS
Cytogenetic Map7D2UniSTS
Cytogenetic Map2F3UniSTS
Cytogenetic Map10A3UniSTS
Cytogenetic MapXA7.3UniSTS
Cytogenetic Map9F1-F2UniSTS
Cytogenetic Map13A3.2UniSTS
Cytogenetic Map10A2UniSTS
Cytogenetic Map1C1UniSTS
Cytogenetic Map1A1UniSTS
Cytogenetic Map12D3UniSTS
Cytogenetic Map1A3-A5UniSTS
Cytogenetic Map2A2UniSTS
Cytogenetic Map3A1UniSTS
Cytogenetic MapXA3.3UniSTS
Cytogenetic Map16A-B1UniSTS
Cytogenetic Map1D2.3UniSTS
Cytogenetic Map6B2.3UniSTS
Cytogenetic Map2G3UniSTS
Cytogenetic MapXA2-A3.1UniSTS
Cytogenetic Map9A5.3UniSTS
Cytogenetic Map14A2-BUniSTS
Cytogenetic Map8E1-E2UniSTS
Cytogenetic Map8A3UniSTS
Cytogenetic Map1G3-H1UniSTS
Cytogenetic Map8B3-C1UniSTS
Cytogenetic Map19C1UniSTS
Cytogenetic Map8C5UniSTS
Cytogenetic Map8A4UniSTS
Cytogenetic Map15F3UniSTS
Cytogenetic Map14E4UniSTS
Cytogenetic Map4D2.2UniSTS
Cytogenetic MapXF5UniSTS
cM Map1040.0UniSTS
Whitehead Genetic1033.9UniSTS


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_054070 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_028260 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011248276 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC158362 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF329695 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK006708 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK012394 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK014232 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK032369 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK088172 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK159647 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK167964 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK168244 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK186901 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK213495 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK214915 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK218541 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC043320 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC056978 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC060064 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466525 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000001520   ⟹   ENSMUSP00000001520
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl8124,204,642 - 124,230,655 (+)Ensembl
GRCm38.p6 Ensembl8123,477,903 - 123,503,916 (+)Ensembl
Ensembl Acc Id: ENSMUST00000098320   ⟹   ENSMUSP00000095924
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl8124,204,642 - 124,230,655 (+)Ensembl
GRCm38.p6 Ensembl8123,477,903 - 123,503,916 (+)Ensembl
Ensembl Acc Id: ENSMUST00000133606
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl8124,204,679 - 124,208,032 (+)Ensembl
GRCm38.p6 Ensembl8123,477,940 - 123,481,293 (+)Ensembl
Ensembl Acc Id: ENSMUST00000146795
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl8124,227,825 - 124,228,354 (+)Ensembl
GRCm38.p6 Ensembl8123,501,086 - 123,501,615 (+)Ensembl
Ensembl Acc Id: ENSMUST00000150872
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl8124,207,105 - 124,216,677 (+)Ensembl
GRCm38.p6 Ensembl8123,480,366 - 123,489,938 (+)Ensembl
Ensembl Acc Id: ENSMUST00000152469
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl8124,219,700 - 124,225,672 (+)Ensembl
GRCm38.p6 Ensembl8123,492,961 - 123,498,933 (+)Ensembl
RefSeq Acc Id: NM_054070   ⟹   NP_473411
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm398124,204,601 - 124,230,655 (+)NCBI
GRCm388123,477,862 - 123,503,916 (+)ENTREZGENE
MGSCv378126,001,762 - 126,027,816 (+)RGD
Celera8127,717,625 - 127,744,063 (+)RGD
cM Map8 ENTREZGENE
Sequence:
RefSeq Acc Id: NR_028260
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm398124,204,601 - 124,230,655 (+)NCBI
GRCm388123,477,862 - 123,503,916 (+)ENTREZGENE
MGSCv378126,001,762 - 126,027,816 (+)RGD
Celera8127,717,625 - 127,744,063 (+)RGD
cM Map8 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_011248276   ⟹   XP_011246578
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm398124,207,815 - 124,228,917 (+)NCBI
GRCm388123,481,128 - 123,502,178 (+)NCBI
Sequence:
RefSeq Acc Id: NP_473411   ⟸   NM_054070
- UniProtKB: Q6PGJ7 (UniProtKB/Swiss-Prot),   Q3THK2 (UniProtKB/Swiss-Prot),   Q9CZN2 (UniProtKB/Swiss-Prot),   Q920A7 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_011246578   ⟸   XM_011248276
- Peptide Label: isoform X1
- UniProtKB: Q920A7 (UniProtKB/Swiss-Prot)
- Sequence:
Ensembl Acc Id: ENSMUSP00000001520   ⟸   ENSMUST00000001520
Ensembl Acc Id: ENSMUSP00000095924   ⟸   ENSMUST00000098320

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q920A7-F1-model_v2 AlphaFold Q920A7 1-789 view protein structure

Promoters
RGD ID:8668587
Promoter ID:EPDNEW_M12324
Type:multiple initiation site
Name:Afg3l1_1
Description:Mus musculus AFG3-like AAA ATPase 1 , transcript variant 2, non-codingRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm388123,477,888 - 123,477,948EPDNEW
RGD ID:6842705
Promoter ID:MM_KWN:56083
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:OTTMUST00000076944,   OTTMUST00000076945,   UC009NWC.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv368126,000,871 - 126,002,197 (+)MPROMDB
RGD ID:6842707
Promoter ID:MM_KWN:56087
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Spleen
Transcripts:ENSMUST00000098319,   UC009NWG.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv368126,025,136 - 126,025,636 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1928277 AgrOrtholog
Ensembl Genes ENSMUSG00000031967 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000001520 ENTREZGENE
  ENSMUST00000001520.13 UniProtKB/Swiss-Prot
  ENSMUST00000098320 ENTREZGENE
  ENSMUST00000098320.6 UniProtKB/Swiss-Prot
Gene3D-CATH 1.10.8.60 UniProtKB/Swiss-Prot
  1.20.58.760 UniProtKB/Swiss-Prot
  3.40.1690.20 UniProtKB/Swiss-Prot
  3.40.50.300 UniProtKB/Swiss-Prot
InterPro AAA+_ATPase UniProtKB/Swiss-Prot
  AAA_lid_3 UniProtKB/Swiss-Prot
  ATP-dep_Zn_Metalloprotease UniProtKB/Swiss-Prot
  ATPase_AAA_core UniProtKB/Swiss-Prot
  ATPase_AAA_CS UniProtKB/Swiss-Prot
  FtsH UniProtKB/Swiss-Prot
  P-loop_NTPase UniProtKB/Swiss-Prot
  Pept_M41_FtsH_extracell UniProtKB/Swiss-Prot
  Peptidase_M41 UniProtKB/Swiss-Prot
  Peptidase_M41-like UniProtKB/Swiss-Prot
KEGG Report mmu:114896 UniProtKB/Swiss-Prot
MGD MGI:1928277 ENTREZGENE
NCBI Gene 114896 ENTREZGENE
PANTHER AFG3-LIKE PROTEIN 1 UniProtKB/Swiss-Prot
  ATP-DEPENDENT PROTEASE UniProtKB/Swiss-Prot
Pfam AAA UniProtKB/Swiss-Prot
  AAA_lid_3 UniProtKB/Swiss-Prot
  FtsH_ext UniProtKB/Swiss-Prot
  Peptidase_M41 UniProtKB/Swiss-Prot
PhenoGen Afg3l1 PhenoGen
PROSITE AAA UniProtKB/Swiss-Prot
SMART AAA UniProtKB/Swiss-Prot
Superfamily-SCOP SSF140990 UniProtKB/Swiss-Prot
  SSF52540 UniProtKB/Swiss-Prot
UniProt AFG31_MOUSE UniProtKB/Swiss-Prot
  Q3THK2 ENTREZGENE
  Q6PGJ7 ENTREZGENE
  Q920A7 ENTREZGENE
  Q9CZN2 ENTREZGENE
UniProt Secondary Q3THK2 UniProtKB/Swiss-Prot
  Q6PGJ7 UniProtKB/Swiss-Prot
  Q9CZN2 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2014-06-10 Afg3l1  AFG3-like AAA ATPase 1    AFG3(ATPase family gene 3)-like 1 (yeast)  Symbol and/or name change 5135510 APPROVED