Nectin3 (nectin cell adhesion molecule 3) - Rat Genome Database

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Gene: Nectin3 (nectin cell adhesion molecule 3) Mus musculus
Analyze
Symbol: Nectin3
Name: nectin cell adhesion molecule 3
RGD ID: 1319898
MGI Page MGI
Description: Enables protein homodimerization activity. Involved in establishment of protein localization to plasma membrane and homophilic cell adhesion via plasma membrane adhesion molecules. Acts upstream of or within several processes, including camera-type eye morphogenesis; fertilization; and protein localization to cell junction. Located in several cellular components, including adherens junction; apical junction complex; and cell-cell contact zone. Is active in hippocampal mossy fiber to CA3 synapse and postsynaptic density membrane. Is expressed in several structures, including metanephros; nervous system; sensory organ; skeletal musculature; and tooth. Orthologous to human NECTIN3 (nectin cell adhesion molecule 3).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 2610301B19Rik; 3000002N23Rik; 4921513D19Rik; AA407785; AU016832; AW538082; CD113; necti; nectin-3; P; poliovirus receptor-related 3; poliovirus receptor-related protein 3; Pvrl3
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391646,208,028 - 46,318,898 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1646,208,069 - 46,318,888 (-)EnsemblGRCm39 Ensembl
GRCm381646,387,665 - 46,498,535 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1646,387,706 - 46,498,525 (-)EnsemblGRCm38mm10GRCm38
MGSCv371646,395,118 - 46,497,080 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361646,314,342 - 46,416,301 (-)NCBIMGSCv36mm8
Celera1646,777,549 - 46,846,805 (-)NCBICelera
Cytogenetic Map16B5NCBI
cM Map1630.48NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,1-dichloroethene  (EXP)
1,2-dichloroethane  (EXP)
1,2-dimethylhydrazine  (EXP)
1,3-dinitrobenzene  (ISO)
17alpha-ethynylestradiol  (EXP)
17beta-estradiol  (EXP,ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
4-hydroxyphenyl retinamide  (EXP)
6-propyl-2-thiouracil  (ISO)
8-Br-cAMP  (ISO)
acetamide  (ISO)
acrylamide  (ISO)
aflatoxin B1  (ISO)
antirheumatic drug  (ISO)
aristolochic acid A  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenous acid  (ISO)
benzo[a]pyrene  (EXP,ISO)
benzo[a]pyrene diol epoxide I  (ISO)
benzo[b]fluoranthene  (EXP)
beta-naphthoflavone  (ISO)
bisphenol A  (EXP,ISO)
buspirone  (ISO)
cadmium atom  (EXP)
caffeine  (ISO)
chloroprene  (EXP)
choline  (EXP)
clofibric acid  (ISO)
cobalt dichloride  (ISO)
copper(II) sulfate  (ISO)
crocidolite asbestos  (EXP)
decabromodiphenyl ether  (ISO)
diarsenic trioxide  (ISO)
dibenz[a,h]anthracene  (EXP)
dichloromethane  (ISO)
dicrotophos  (ISO)
diuron  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
endosulfan  (ISO)
ethanol  (EXP)
ethylbenzene  (ISO)
flutamide  (ISO)
folic acid  (EXP)
FR900359  (ISO)
glafenine  (ISO)
ketamine  (ISO)
L-methionine  (EXP)
leflunomide  (ISO)
lipopolysaccharide  (ISO)
N-nitrosodiethylamine  (ISO)
nefazodone  (ISO)
niclosamide  (ISO)
nimesulide  (ISO)
ouabain  (ISO)
oxaliplatin  (ISO)
paracetamol  (EXP,ISO)
perfluorooctane-1-sulfonic acid  (ISO)
phenobarbital  (EXP)
pirinixic acid  (EXP)
propiconazole  (EXP)
S-(1,2-dichlorovinyl)-L-cysteine  (ISO)
SB 431542  (ISO)
silicon dioxide  (EXP)
silver atom  (EXP)
silver(0)  (EXP)
sodium arsenite  (ISO)
Soman  (ISO)
succimer  (EXP)
sunitinib  (ISO)
tamoxifen  (EXP)
temozolomide  (ISO)
tetrachloromethane  (EXP)
thapsigargin  (ISO)
titanium dioxide  (EXP)
topotecan  (ISO)
trichloroethene  (ISO)
triptonide  (EXP)
troglitazone  (EXP)
urethane  (ISO)
valproic acid  (EXP,ISO)
vinclozolin  (ISO)
vorinostat  (ISO)

References

References - curated
# Reference Title Reference Citation
1. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2. Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Ko MS, etal., Development 2000 Apr;127(8):1737-49.
3. MGDs mouse GO annotations MGD data from the GO Consortium
4. MGD IEA MGD IEA
5. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
6. Mouse MP Annotation Import Pipeline RGD automated import pipeline
7. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
8. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10744716   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11827984   PMID:12121624   PMID:12477932   PMID:12515806   PMID:12558799   PMID:12686612  
PMID:12740392   PMID:12759359   PMID:12826663   PMID:14610273   PMID:14871893   PMID:15108322   PMID:15328010   PMID:15550395   PMID:15660130   PMID:15728677   PMID:15741237   PMID:15782199  
PMID:15811349   PMID:15989986   PMID:16128743   PMID:16141072   PMID:16141073   PMID:16249236   PMID:16300961   PMID:16602821   PMID:16801389   PMID:16923130   PMID:17145500   PMID:18097512  
PMID:18199763   PMID:18505795   PMID:18547333   PMID:19116242   PMID:20436479   PMID:21038445   PMID:21267068   PMID:21491433   PMID:21652626   PMID:21677750   PMID:21703451   PMID:21769484  
PMID:21798896   PMID:21873635   PMID:21910732   PMID:22354871   PMID:22424930   PMID:22512338   PMID:23341629   PMID:23487309   PMID:23533177   PMID:23644483   PMID:23727838   PMID:23931996  
PMID:23990464   PMID:24112238   PMID:24115331   PMID:24381198   PMID:24952961   PMID:25263091   PMID:25387952   PMID:25826454   PMID:26663531   PMID:26874185   PMID:26929452   PMID:28258213  
PMID:28872640   PMID:29444423   PMID:30635555   PMID:30814219   PMID:31066147   PMID:31073041   PMID:32324042   PMID:32385776   PMID:32554809   PMID:33160402   PMID:35304570   PMID:38187761  


Genomics

Comparative Map Data
Nectin3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391646,208,028 - 46,318,898 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1646,208,069 - 46,318,888 (-)EnsemblGRCm39 Ensembl
GRCm381646,387,665 - 46,498,535 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1646,387,706 - 46,498,525 (-)EnsemblGRCm38mm10GRCm38
MGSCv371646,395,118 - 46,497,080 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361646,314,342 - 46,416,301 (-)NCBIMGSCv36mm8
Celera1646,777,549 - 46,846,805 (-)NCBICelera
Cytogenetic Map16B5NCBI
cM Map1630.48NCBI
NECTIN3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383111,071,816 - 111,194,170 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3111,070,071 - 111,275,563 (+)EnsemblGRCh38hg38GRCh38
GRCh373110,790,663 - 110,913,017 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 363112,273,555 - 112,335,752 (+)NCBINCBI36Build 36hg18NCBI36
Build 343112,273,554 - 112,335,752NCBI
Celera3109,190,329 - 109,252,381 (+)NCBICelera
Cytogenetic Map3q13.13NCBI
HuRef3108,164,840 - 108,287,207 (+)NCBIHuRef
CHM1_13110,754,866 - 110,877,275 (+)NCBICHM1_1
T2T-CHM13v2.03113,792,242 - 113,914,605 (+)NCBIT2T-CHM13v2.0
Nectin3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81167,825,296 - 67,931,999 (+)NCBIGRCr8
mRatBN7.21154,362,712 - 54,469,351 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1154,364,487 - 54,462,519 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1163,127,098 - 63,232,154 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01155,788,938 - 55,893,999 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01154,896,828 - 55,001,808 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01157,897,879 - 57,995,193 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1157,897,879 - 57,993,548 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01162,049,050 - 62,146,379 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41155,843,801 - 55,940,634 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11155,901,379 - 55,946,114 (+)NCBI
Celera1153,897,883 - 53,994,695 (+)NCBICelera
Cytogenetic Map11q21NCBI
Nectin3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542711,606,909 - 11,724,004 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542711,639,942 - 11,731,910 (+)NCBIChiLan1.0ChiLan1.0
NECTIN3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22109,075,028 - 109,205,819 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13109,079,806 - 109,210,597 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03108,223,380 - 108,354,079 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13115,148,481 - 115,278,563 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3115,148,481 - 115,270,507 (+)Ensemblpanpan1.1panPan2
NECTIN3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13315,868,813 - 16,173,158 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3315,911,411 - 15,933,307 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3315,973,728 - 16,274,980 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03316,032,718 - 16,154,568 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.13315,919,132 - 16,220,406 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03315,972,140 - 16,266,709 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03316,516,552 - 16,812,105 (+)NCBIUU_Cfam_GSD_1.0
Nectin3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405602138,471,852 - 138,498,191 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493683486,226 - 109,684 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493683486,195 - 110,686 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NECTIN3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13148,452,309 - 148,579,052 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.113148,448,581 - 148,578,920 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.213158,456,487 - 158,604,357 (+)NCBISscrofa10.2Sscrofa10.2susScr3
NECTIN3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12269,597,729 - 69,719,397 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2269,598,895 - 69,719,343 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604196,776,500 - 96,905,043 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Nectin3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473137,433,809 - 37,568,677 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473137,425,966 - 37,567,938 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Nectin3
3414 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:4064
Count of miRNA genes:988
Interacting mature miRNAs:1457
Transcripts:ENSMUST00000023334, ENSMUST00000023335, ENSMUST00000096052, ENSMUST00000119941, ENSMUST00000121245, ENSMUST00000121803, ENSMUST00000124602, ENSMUST00000132089, ENSMUST00000133935, ENSMUST00000149901
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
27226768Tibl9_mtibia length 9, 5 week (mouse)16331786451420363Mouse
27226785Feml12_mfemur length 12, 5 week (mouse)16331786464620363Mouse
26884432Zlq7_mzygomatic length QTL 7, 10 week (mouse)16381786464620363Mouse
1357763Lp1_mlymphocyte proliferation 1 (mouse)Not determined16654297965466552Mouse
26884376Skwq4_mskull length QTL 4, 5 week (mouse)16841786490896888Mouse
1301841Lrnx9_mlearning-contextual 9 (mouse)Not determined161222536046225471Mouse
10045614Rapop6_mradiation-induced apoptosis 6 (mouse)Not determined161480292148803032Mouse
4142236Pstc4_mperiosteal circumference 4 (mouse)Not determined161552290949523112Mouse
1357517Bwtn1_mbody weight at necropsy 1 (mouse)Not determined162001932985600826Mouse
1300534Bmd15_mbone mineral density 15 (mouse)Not determined162193838355938574Mouse
4141179Ipng3_mimprinted postnatal growth 3 (mouse)Not determined2277525257594076Mouse
11059559Lmr12a_mleishmaniasis resistance 12a (mouse)162879281362792952Mouse
11059560Lmr12b_mleishmaniasis resistance 12b (mouse)162879281362792952Mouse
11049571Lmr12c_mleishmaniasis resistance 12c (mouse)162879281362792952Mouse
1300915Lmr12_mleishmaniasis resistance 12 (mouse)Not determined162879281362792952Mouse
1301070Cypr1_mcytokine production 1 (mouse)Not determined163231279566312933Mouse
4142187Arrd3_mage-related retinal degeneration 3 (mouse)Not determined3252290965466552Mouse
1302096Aod1a_mautoimmune ovarian dysgenesis 1a (mouse)Not determined163544664392573008Mouse
26884416Bzwq5_mbi-zygomatic width QTL 5, 5 week (mouse)163732036284696888Mouse
4142112Skts-fp3_mskin tumor susceptibility in FVB and PWK 3 (mouse)Not determined164005388172924385Mouse
11522747Eae41_mexperimental allergic encephalomyelitis susceptibility 41 (mouse)164039913478015472Mouse
1301138Pcd4ts3_mp-glycoprotein positive CD4 T cell subset 3 (mouse)Not determined164059392374594076Mouse
1357778Diobq_mdiet-induced obesity QTL (mouse)Not determined164219781782331174Mouse
4141212Imraq3_mimmune response to AAV2 QTL 3 (mouse)Not determined164438335078383506Mouse
1301719Remslp3_mrapid eye movement sleep 3 (mouse)Not determined164438335078383506Mouse
1558836Dice1b_mdetermination of interleukin 4 commitment 1b (mouse)Not determined164551100072274485Mouse

Markers in Region
RH133661  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381646,445,780 - 46,445,935UniSTSGRCm38
MGSCv371646,445,893 - 46,446,048UniSTSGRCm37
Celera1646,828,227 - 46,828,382UniSTS
Cytogenetic Map16B5UniSTS
AW538082  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381646,447,469 - 46,447,597UniSTSGRCm38
MGSCv371646,447,582 - 46,447,710UniSTSGRCm37
Celera1646,829,916 - 46,830,044UniSTS
Cytogenetic Map16B5UniSTS
Whitehead/MRC_RH16537.12UniSTS
AU016832  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381646,436,335 - 46,436,415UniSTSGRCm38
MGSCv371646,436,448 - 46,436,528UniSTSGRCm37
Celera1646,818,782 - 46,818,862UniSTS
Cytogenetic Map16B5UniSTS
Whitehead/MRC_RH16535.35UniSTS
RH125725  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381646,448,099 - 46,448,348UniSTSGRCm38
MGSCv371646,448,212 - 46,448,461UniSTSGRCm37
Celera1646,830,546 - 46,830,795UniSTS
Cytogenetic Map16B5UniSTS
Whitehead/MRC_RH16433.04UniSTS
RH12011  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381646,448,700 - 46,448,824UniSTSGRCm38
MGSCv371646,448,813 - 46,448,937UniSTSGRCm37
Celera1646,831,147 - 46,831,271UniSTS
Cytogenetic Map16B5UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_021495 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_021496 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_021497 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006522434 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030249224 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030249225 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036160078 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001781846 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001781847 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001781848 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_003951809 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_003951810 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_003951811 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_003951812 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_384583 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC113113 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF195833 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF195834 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF195835 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK004403 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK011949 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK012834 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK013863 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK085839 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK213929 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC096530 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC125588 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC132187 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BQ174425 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BU701648 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY713810 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466521 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CJ102084 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSMUST00000023334   ⟹   ENSMUSP00000023334
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1646,267,532 - 46,317,330 (-)Ensembl
GRCm38.p6 Ensembl1646,447,169 - 46,496,967 (-)Ensembl
RefSeq Acc Id: ENSMUST00000023335   ⟹   ENSMUSP00000023335
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1646,208,069 - 46,317,330 (-)Ensembl
GRCm38.p6 Ensembl1646,387,706 - 46,496,967 (-)Ensembl
RefSeq Acc Id: ENSMUST00000096052   ⟹   ENSMUSP00000093757
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1646,256,342 - 46,317,215 (-)Ensembl
GRCm38.p6 Ensembl1646,435,979 - 46,496,852 (-)Ensembl
RefSeq Acc Id: ENSMUST00000119941   ⟹   ENSMUSP00000113301
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1646,215,268 - 46,231,588 (-)Ensembl
GRCm38.p6 Ensembl1646,394,905 - 46,411,225 (-)Ensembl
RefSeq Acc Id: ENSMUST00000121245   ⟹   ENSMUSP00000113146
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1646,215,352 - 46,268,873 (-)Ensembl
GRCm38.p6 Ensembl1646,394,989 - 46,448,510 (-)Ensembl
RefSeq Acc Id: ENSMUST00000121803   ⟹   ENSMUSP00000112567
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1646,215,221 - 46,231,532 (-)Ensembl
GRCm38.p6 Ensembl1646,394,858 - 46,411,169 (-)Ensembl
RefSeq Acc Id: ENSMUST00000124602   ⟹   ENSMUSP00000115927
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1646,215,806 - 46,258,418 (-)Ensembl
GRCm38.p6 Ensembl1646,395,443 - 46,438,055 (-)Ensembl
RefSeq Acc Id: ENSMUST00000132089
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1646,256,754 - 46,258,996 (-)Ensembl
GRCm38.p6 Ensembl1646,436,391 - 46,438,633 (-)Ensembl
RefSeq Acc Id: ENSMUST00000133935
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1646,279,215 - 46,318,888 (-)Ensembl
GRCm38.p6 Ensembl1646,458,852 - 46,498,525 (-)Ensembl
RefSeq Acc Id: ENSMUST00000149901   ⟹   ENSMUSP00000117479
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1646,275,025 - 46,317,135 (-)Ensembl
GRCm38.p6 Ensembl1646,454,662 - 46,496,772 (-)Ensembl
RefSeq Acc Id: NM_021495   ⟹   NP_067470
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391646,267,524 - 46,317,330 (-)NCBI
GRCm381646,447,161 - 46,496,967 (-)NCBI
MGSCv371646,395,118 - 46,497,080 (-)RGD
Celera1646,777,402 - 46,846,805 (-)ENTREZGENE
cM Map16 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_021496   ⟹   NP_067471
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391646,215,221 - 46,317,330 (-)NCBI
GRCm381646,394,858 - 46,496,967 (-)NCBI
MGSCv371646,395,118 - 46,497,080 (-)RGD
Celera1646,777,402 - 46,846,805 (-)ENTREZGENE
cM Map16 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_021497   ⟹   NP_067472
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391646,256,342 - 46,317,330 (-)NCBI
GRCm381646,435,979 - 46,496,967 (-)NCBI
MGSCv371646,395,118 - 46,497,080 (-)RGD
Celera1646,777,402 - 46,846,805 (-)ENTREZGENE
cM Map16 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006522434   ⟹   XP_006522497
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391646,256,499 - 46,317,403 (-)NCBI
GRCm381646,436,136 - 46,497,152 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030249224   ⟹   XP_030105084
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391646,264,007 - 46,316,918 (-)NCBI
GRCm381646,443,644 - 46,496,559 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030249225   ⟹   XP_030105085
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391646,264,007 - 46,318,898 (-)NCBI
GRCm381646,443,644 - 46,498,535 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036160078   ⟹   XP_036015971
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391646,269,459 - 46,317,403 (-)NCBI
Sequence:
RefSeq Acc Id: XR_001781846
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391646,208,028 - 46,317,403 (-)NCBI
GRCm381646,387,665 - 46,497,150 (-)NCBI
Sequence:
RefSeq Acc Id: XR_001781847
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391646,208,028 - 46,318,882 (-)NCBI
GRCm381646,387,665 - 46,498,519 (-)NCBI
Sequence:
RefSeq Acc Id: XR_001781848
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391646,208,028 - 46,316,918 (-)NCBI
GRCm381646,387,665 - 46,496,559 (-)NCBI
Sequence:
RefSeq Acc Id: XR_003951809
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391646,256,499 - 46,317,403 (-)NCBI
GRCm381646,436,136 - 46,497,150 (-)NCBI
Sequence:
RefSeq Acc Id: XR_003951810
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391646,208,028 - 46,316,918 (-)NCBI
GRCm381646,387,665 - 46,496,559 (-)NCBI
Sequence:
RefSeq Acc Id: XR_003951811
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391646,208,028 - 46,284,865 (-)NCBI
GRCm381646,387,665 - 46,464,502 (-)NCBI
Sequence:
RefSeq Acc Id: XR_003951812
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391646,256,499 - 46,316,923 (-)NCBI
GRCm381646,436,136 - 46,496,560 (-)NCBI
Sequence:
RefSeq Acc Id: XR_384583
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391646,256,499 - 46,317,403 (-)NCBI
GRCm381646,436,136 - 46,497,151 (-)NCBI
Sequence:
RefSeq Acc Id: NP_067471   ⟸   NM_021496
- Peptide Label: isoform beta
- UniProtKB: Q9JLB9 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_067472   ⟸   NM_021497
- Peptide Label: isoform gamma
- UniProtKB: Q9JLB9 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_067470   ⟸   NM_021495
- Peptide Label: isoform alpha
- UniProtKB: Q9JLB7 (UniProtKB/Swiss-Prot),   Q9D006 (UniProtKB/Swiss-Prot),   Q059N7 (UniProtKB/Swiss-Prot),   Q9JLB8 (UniProtKB/Swiss-Prot),   Q9JLB9 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006522497   ⟸   XM_006522434
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_030105085   ⟸   XM_030249225
- Peptide Label: isoform X3
RefSeq Acc Id: XP_030105084   ⟸   XM_030249224
- Peptide Label: isoform X3
RefSeq Acc Id: ENSMUSP00000113301   ⟸   ENSMUST00000119941
RefSeq Acc Id: ENSMUSP00000115927   ⟸   ENSMUST00000124602
RefSeq Acc Id: ENSMUSP00000117479   ⟸   ENSMUST00000149901
RefSeq Acc Id: ENSMUSP00000113146   ⟸   ENSMUST00000121245
RefSeq Acc Id: ENSMUSP00000093757   ⟸   ENSMUST00000096052
RefSeq Acc Id: ENSMUSP00000023335   ⟸   ENSMUST00000023335
RefSeq Acc Id: ENSMUSP00000023334   ⟸   ENSMUST00000023334
RefSeq Acc Id: ENSMUSP00000112567   ⟸   ENSMUST00000121803
RefSeq Acc Id: XP_036015971   ⟸   XM_036160078
- Peptide Label: isoform X2
Protein Domains
Ig-like   Ig-like C2-type   Ig-like V-type

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9JLB9-F1-model_v2 AlphaFold Q9JLB9 1-549 view protein structure

Promoters
RGD ID:6827401
Promoter ID:MM_KWN:21142
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Lung
Transcripts:ENSMUST00000121245
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361646,448,296 - 46,448,796 (-)MPROMDB
RGD ID:8686316
Promoter ID:EPDNEW_M21187
Type:initiation region
Name:Nectin3_1
Description:Mus musculus nectin cell adhesion molecule 3 , transcript variantalpha, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381646,496,967 - 46,497,027EPDNEW
RGD ID:6827403
Promoter ID:MM_KWN:21143
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6
Transcripts:ENSMUST00000096052,   OTTMUST00000035531,   OTTMUST00000035532,   OTTMUST00000074474
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361646,497,269 - 46,497,769 (-)MPROMDB
RGD ID:6827402
Promoter ID:MM_KWN:21144
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain,   ES_Cell,   MEF_B6
Transcripts:OTTMUST00000074473
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361646,498,144 - 46,498,644 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1930171 AgrOrtholog
Ensembl Genes ENSMUSG00000022656 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000023334 ENTREZGENE
  ENSMUST00000023334.15 UniProtKB/Swiss-Prot
  ENSMUST00000023335 ENTREZGENE
  ENSMUST00000023335.13 UniProtKB/Swiss-Prot
  ENSMUST00000096052 ENTREZGENE
  ENSMUST00000096052.9 UniProtKB/Swiss-Prot
  ENSMUST00000119941.2 UniProtKB/TrEMBL
  ENSMUST00000121245.8 UniProtKB/TrEMBL
  ENSMUST00000121803.8 UniProtKB/TrEMBL
  ENSMUST00000124602.2 UniProtKB/TrEMBL
  ENSMUST00000149901.2 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro CD80_C2-set UniProtKB/Swiss-Prot
  Ig-like_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig_sub UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig_V-set UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  IgC1_2_Nectin-3-4-like UniProtKB/Swiss-Prot
  Nectin-3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:58998 UniProtKB/Swiss-Prot
MGD MGI:1930171 ENTREZGENE
NCBI Gene 58998 ENTREZGENE
PANTHER NECTIN-RELATED UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR23277:SF12 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam C2-set_2 UniProtKB/Swiss-Prot
  V-set UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Nectin3 PhenoGen
PROSITE IG_LIKE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART SM00409 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF48726 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt D3YWA3_MOUSE UniProtKB/TrEMBL
  D3Z657_MOUSE UniProtKB/TrEMBL
  D3Z6X5_MOUSE UniProtKB/TrEMBL
  F6UII7_MOUSE UniProtKB/TrEMBL
  F7A4R2_MOUSE UniProtKB/TrEMBL
  NECT3_MOUSE UniProtKB/Swiss-Prot
  Q059N7 ENTREZGENE
  Q9D006 ENTREZGENE
  Q9JLB7 ENTREZGENE
  Q9JLB8 ENTREZGENE
  Q9JLB9 ENTREZGENE
UniProt Secondary Q059N7 UniProtKB/Swiss-Prot
  Q9D006 UniProtKB/Swiss-Prot
  Q9JLB7 UniProtKB/Swiss-Prot
  Q9JLB8 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-04-26 Nectin3  nectin cell adhesion molecule 3  Pvrl3  poliovirus receptor-related 3  Symbol and/or name change 5135510 APPROVED