Alkbh5 (alkB homolog 5, RNA demethylase) - Rat Genome Database

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Gene: Alkbh5 (alkB homolog 5, RNA demethylase) Mus musculus
Analyze
Symbol: Alkbh5
Name: alkB homolog 5, RNA demethylase
RGD ID: 1319866
MGI Page MGI
Description: Enables mRNA N6-methyladenosine dioxygenase activity. Involved in mRNA destabilization and spermatogenesis. Located in nuclear speck. Is expressed in brain; intestine; and liver. Orthologous to human ALKBH5 (alkB homolog 5, RNA demethylase).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: Abh; Abh5; alkB, alkylation repair homolog 5; alkylated DNA repair protein alkB homolog 5; alpha-ketoglutarate-dependent dioxygenase alkB homolog 5; AW050020; AW215868; E130207K11; expressed sequence AW050020; expressed sequence AW215868; Ofo; Ofoxd; oxoglutarate and iron-dependent oxygenase domain containing; probable alpha-ketoglutarate-dependent dioxygenase ABH5; RNA demethylase ALKBH5
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391160,428,509 - 60,449,338 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1160,427,207 - 60,449,338 (+)EnsemblGRCm39 Ensembl
GRCm381160,537,683 - 60,558,512 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1160,536,381 - 60,558,512 (+)EnsemblGRCm38mm10GRCm38
MGSCv371160,351,185 - 60,372,014 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361160,354,173 - 60,372,092 (+)NCBIMGSCv36mm8
Celera1165,862,595 - 65,871,990 (-)NCBICelera
Cytogenetic Map11B2NCBI
cM Map1137.81NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytosol  (IEA,ISO)
Golgi apparatus  (IEA,ISO)
nuclear speck  (IMP,ISO,ISS)
nucleoplasm  (ISO)
nucleus  (IBA,ISO,ISS)
paraspeckles  (ISO,ISS)

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. Mouse MP Annotation Import Pipeline RGD automated import pipeline
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10552926   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11125038   PMID:11217851   PMID:12466851   PMID:12477932   PMID:14610273   PMID:15489334  
PMID:15782199   PMID:16141072   PMID:16141073   PMID:16174769   PMID:16818490   PMID:17273973   PMID:21873635   PMID:23177736   PMID:25519132   PMID:29279410   PMID:30196744   PMID:30870073  
PMID:31439758   PMID:32402250   PMID:32402251   PMID:32717204   PMID:33911218   PMID:34044094   PMID:34088896   PMID:34134995   PMID:35098923   PMID:35142084   PMID:35724807   PMID:35764614  
PMID:35784864   PMID:35874829   PMID:35939687   PMID:36228542   PMID:36418936   PMID:36792369   PMID:36859428   PMID:37072102   PMID:37169182   PMID:37193033   PMID:37263926   PMID:37269288  
PMID:37436898   PMID:37524872   PMID:37584615   PMID:37689242   PMID:37740102   PMID:37742191   PMID:37795886   PMID:37848452   PMID:37949419   PMID:37989146   PMID:38056583   PMID:38114747  
PMID:38156523   PMID:38182060   PMID:38227578   PMID:38443404   PMID:38617741   PMID:38773146   PMID:38821243   PMID:38996894   PMID:39060657   PMID:39098715   PMID:39367406   PMID:39441582  


Genomics

Comparative Map Data
Alkbh5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391160,428,509 - 60,449,338 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1160,427,207 - 60,449,338 (+)EnsemblGRCm39 Ensembl
GRCm381160,537,683 - 60,558,512 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1160,536,381 - 60,558,512 (+)EnsemblGRCm38mm10GRCm38
MGSCv371160,351,185 - 60,372,014 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361160,354,173 - 60,372,092 (+)NCBIMGSCv36mm8
Celera1165,862,595 - 65,871,990 (-)NCBICelera
Cytogenetic Map11B2NCBI
cM Map1137.81NCBI
ALKBH5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381718,183,828 - 18,209,954 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1718,183,078 - 18,209,954 (+)EnsemblGRCh38hg38GRCh38
GRCh371718,087,142 - 18,113,268 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361718,027,592 - 18,053,993 (+)NCBINCBI36Build 36hg18NCBI36
Celera1719,028,003 - 19,054,331 (+)NCBICelera
Cytogenetic Map17p11.2NCBI
HuRef1717,840,215 - 17,866,584 (+)NCBIHuRef
CHM1_11718,095,612 - 18,122,007 (+)NCBICHM1_1
T2T-CHM13v2.01718,130,641 - 18,156,760 (+)NCBIT2T-CHM13v2.0
Alkbh5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81045,844,411 - 45,865,853 (+)NCBIGRCr8
mRatBN7.21045,344,888 - 45,366,331 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1045,343,395 - 45,366,331 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1050,045,424 - 50,066,927 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01049,535,808 - 49,557,314 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01045,039,416 - 45,060,918 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01046,906,314 - 46,927,759 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1046,906,115 - 46,930,579 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01046,679,920 - 46,700,727 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41046,811,205 - 46,832,649 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11046,824,567 - 46,845,705 (+)NCBI
Celera1044,601,477 - 44,622,922 (+)NCBICelera
Cytogenetic Map10q22NCBI
Alkbh5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495547811,105,920 - 11,128,222 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495547811,104,445 - 11,128,980 (-)NCBIChiLan1.0ChiLan1.0
ALKBH5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21953,057,922 - 53,085,590 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11757,769,067 - 57,795,721 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01732,725,632 - 32,753,021 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11738,003,362 - 38,030,715 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1738,003,362 - 38,030,715 (-)Ensemblpanpan1.1panPan2
ALKBH5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1541,339,292 - 41,365,641 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl541,343,241 - 41,364,547 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha541,478,767 - 41,504,424 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0541,445,991 - 41,471,674 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl541,446,003 - 41,472,037 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1541,413,849 - 41,439,509 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0541,361,292 - 41,386,942 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0541,553,123 - 41,578,789 (-)NCBIUU_Cfam_GSD_1.0
Alkbh5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560261,112,447 - 61,137,218 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367411,729,679 - 1,757,419 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367411,729,707 - 1,756,108 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ALKBH5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1260,507,667 - 60,529,733 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11260,507,662 - 60,530,239 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
ALKBH5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11617,221,643 - 17,249,038 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1617,222,378 - 17,249,117 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660593,656,506 - 3,683,620 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Alkbh5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248493,257,459 - 3,280,245 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248493,257,460 - 3,280,870 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Alkbh5
473 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1388
Count of miRNA genes:717
Interacting mature miRNAs:891
Transcripts:ENSMUST00000044250, ENSMUST00000134770
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357844Si5lq5_mserum IGFBP-5 level QTL 5 (mouse)Not determined112816587362165976Mouse
4141367Inf1_macute ozone induced inflammation (mouse)Not determined44630038113058009Mouse
1357720Kidpq1_mkidney weight percentage QTL 1 (mouse)Not determined111226863768500330Mouse
4141875Etax9_methanol induced ataxia 9 (mouse)Not determined5528498572209927Mouse
1300765Bbaa4_mB.burgdorferi-associated arthritis 4 (mouse)Not determined114618516780185262Mouse
1357851Scfq3_msubcutaneous fat pad weight QTL 3 (mouse)Not determined111226863768500330Mouse
1301788Lbw8_mlupus NZB x NZW 8 (mouse)Not determined113650328770509492Mouse
27226762Feml21_mfemur length 21, 16 week (mouse)111175000065990826Mouse
1302021Nidd1n_mnon-insulin-dependent diabetes mellitus 1 in NSY (mouse)Not determined114516587379978324Mouse
4142121Tmc1m2_mTmc1 modifier 2 (mouse)Not determined1156864027114157957Mouse
1301896Tria1_mT-cell receptor induced activation 1 (mouse)Not determined113661356570613855Mouse
4141470Egq4_mearly growth QTL 4 (mouse)Not determined1226863768500330Mouse
1301426Desp2_mdespair 2 (mouse)Not determined112870858162708700Mouse
4141982Skts-fp2_mskin tumor susceptibility in FVB and PWK 2 (mouse)Not determined5871926685066529Mouse
4142109W10q2_mweight 10 weeks QTL 2 (mouse)Not determined1226863768500330Mouse
4141853Skmw17_mskeletal muscle weight 17 (mouse)Not determined113708094171081064Mouse
1357878Mastr_mmodifier of astrocytoma (mouse)Not determined114570858189818733Mouse
4141084Spqq1_msperm quality QTL 1 (mouse)Not determined5406567063319522Mouse
13208559Wght10_mweight 10 (mouse)11395000088890826Mouse
13524840Ppiq9a_mprepulse inhibition QTL 9a (mouse)115249438586494385Mouse
13208558Lgth12_mbody length 12 (mouse)11395000094890826Mouse
26884401Huml4_mhumerus length 4, 10 week (mouse)111155000068490826Mouse
1300664Etohcta9_methanol conditioned taste aversion 9 (mouse)Not determined115775466091754758Mouse
10053682Eae45_mexperimental allergic encephalomyelitis susceptibility 45 (mouse)Not determined115849055574754758Mouse
10053687Eae6_msusceptibility to experimental allergic encephalomyelitis 6 (mouse)Not determined111778196668500330Mouse
1300924Ity2_mimmunity to S. typhimurium 2 (mouse)Not determined15850803087695238Mouse
13208569Bmiq10_mbody mass index QTL 10 (mouse)113589082784890826Mouse
27226798Scvln18_msacral vertebrae length 2, 16 week (mouse)11325000060690826Mouse
4141582Lgaq1_mlate growth adjusted QTL 1 (mouse)Not determined1226863768500330Mouse
4141966Tailq1_mtail length QTL 1 (mouse)Not determined1226863768500330Mouse
11532699Sluc36b_msusceptibility to lung cancer 36b (mouse)114225661776256730Mouse
11532698Sluc36a_msusceptibility to lung cancer 36a (mouse)114225661776256730Mouse
1300774Pgia7_mproteoglycan induced arthritis 7 (mouse)Not determined115339058887390737Mouse
1558945Orgwq8_morgan weight QTL 8 (mouse)Not determined111705617567078411Mouse
11532697Sluc36_msusceptibility to lung cancer 36 (mouse)115925661769482699Mouse
4142216Lgq1_mlate growth QTL 1 (mouse)Not determined1226863768500330Mouse
1302186Blmpf2_mbleomycin-induced pulmonary fibrosis 2 (mouse)Not determined115406567067078411Mouse
4141830Pregq1_mpregnancy QTL 1 (mouse)Not determined115412675283733652Mouse
1300905Scc6_mcolon tumor susceptibility 6 (mouse)Not determined11688027789019734Mouse
13524848Ppiq7_mprepulse inhibition QTL 7 (mouse)112856914762569147Mouse
1357782Char8_mP. chabaudi malaria resistance QTL 8 (mouse)Not determined113557861669684987Mouse
39128214Lwq20_mliver weight QTL 20 (mouse)1112268637118022724Mouse
11059563Lmr31_mleishmaniasis resistance 31 (mouse)113210057766100694Mouse
1301328Mol4_mmodifier of LPS-response 4 (mouse)Not determined113628257783481356Mouse
26884446Sklq10_mskull length QTL 10, 10 week (mouse)11325000062890826Mouse
10412246Dfs2_mdental fluorosis suseptibility 2 (mouse)Not determined112180736495881231Mouse
1559002Lmrq4_mLeishmania major resistance QTL 4 (mouse)Not determined111226863769684947Mouse
1301830Ssta4_msusceptibility to Salmonella typhimurium antigens 4 (mouse)Not determined115007819184078411Mouse
4142308W6q3_mweight 6 weeks QTL 3 (mouse)Not determined111226863768500330Mouse
1357640Orq2_movulation rate QTL 2 (mouse)Not determined111226863768500330Mouse
10766457Nwa3_mNew Zealand White autoimmunity 3 (mouse)113801611572016209Mouse
4142300Ctrq3_mC. trachomatis resistance QTL 3 (mouse)Not determined114463003876854757Mouse
1357437Epfq4_mepididymal fat pad weight QTL 4 (mouse)Not determined111226863768500330Mouse
27226738Metcl11_mmetatarsal-calcaneal length 11, 10 week (mouse)11885000061390826Mouse
11522752Cocia18_mcocaine-induced activity, QTL 18 (mouse)113100820965008209Mouse
1301988Bmd11_mbone mineral density 11 (mouse)Not determined114631940780319522Mouse
4141127W3q4_mweight 3 weeks QTL 4 (mouse)Not determined1226863768500330Mouse
4141894Nidd6k_mNidd6 on KK-A (mouse)Not determined1912420496897826Mouse
4142148Ckdbp2_mchronic kidney disease blood pressure locus 2 (mouse)Not determined115408094165103841Mouse
26884453Sklq16_mskull length QTL 16, 16 week (mouse)11325000072690826Mouse

Markers in Region
AW215868  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381160,558,215 - 60,558,337UniSTSGRCm38
MGSCv371160,371,717 - 60,371,839UniSTSGRCm37
Celera1165,862,770 - 65,862,892UniSTS
Cytogenetic Map11B2UniSTS
Whitehead/MRC_RH11797.72UniSTS
AW050020  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381160,555,583 - 60,555,704UniSTSGRCm38
MGSCv371160,369,085 - 60,369,206UniSTSGRCm37
Celera1167,282,349 - 67,282,470UniSTS
Cytogenetic Map11B2UniSTS
Whitehead/MRC_RH11800.12UniSTS
RH143926  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381160,537,971 - 60,538,217UniSTSGRCm38
MGSCv371160,351,473 - 60,351,719UniSTSGRCm37
Cytogenetic Map11B2UniSTS
BE106469  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381160,554,345 - 60,554,544UniSTSGRCm38
MGSCv371160,367,847 - 60,368,046UniSTSGRCm37
Celera1167,283,509 - 67,283,708UniSTS
Cytogenetic Map11B2UniSTS


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSMUST00000044250   ⟹   ENSMUSP00000049116
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1160,428,804 - 60,449,338 (+)Ensembl
GRCm38.p6 Ensembl1160,537,978 - 60,558,512 (+)Ensembl
Ensembl Acc Id: ENSMUST00000134770
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1160,427,207 - 60,445,193 (+)Ensembl
GRCm38.p6 Ensembl1160,536,381 - 60,554,367 (+)Ensembl
RefSeq Acc Id: NM_172943   ⟹   NP_766531
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391160,428,509 - 60,449,338 (+)NCBI
GRCm381160,537,683 - 60,558,512 (+)ENTREZGENE
MGSCv371160,351,185 - 60,372,014 (+)RGD
Celera1165,862,595 - 65,871,990 (-)RGD
Celera1167,280,364 - 67,284,339 (-)NCBI
cM Map11 ENTREZGENE
Sequence:
Protein Sequences
Protein RefSeqs NP_766531 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH52076 (Get FASTA)   NCBI Sequence Viewer  
  BAC35478 (Get FASTA)   NCBI Sequence Viewer  
  BAC35481 (Get FASTA)   NCBI Sequence Viewer  
  BAE36711 (Get FASTA)   NCBI Sequence Viewer  
  BAE37281 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000049116
  ENSMUSP00000049116.4
GenBank Protein Q3TSG4 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_766531   ⟸   NM_172943
- UniProtKB: Q8BKC1 (UniProtKB/Swiss-Prot),   Q8BKB9 (UniProtKB/Swiss-Prot),   Q80US0 (UniProtKB/Swiss-Prot),   Q3TSG4 (UniProtKB/Swiss-Prot)
- Sequence:
Ensembl Acc Id: ENSMUSP00000049116   ⟸   ENSMUST00000044250

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q3TSG4-F1-model_v2 AlphaFold Q3TSG4 1-395 view protein structure

Promoters
RGD ID:6820372
Promoter ID:MM_KWN:7714
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_2Hour,   MEF_B4
Transcripts:OTTMUST00000017735
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361160,349,911 - 60,350,411 (+)MPROMDB
RGD ID:6820371
Promoter ID:MM_KWN:7715
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:NM_172943
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361160,350,201 - 60,352,602 (+)MPROMDB
RGD ID:8674882
Promoter ID:EPDNEW_M15472
Type:initiation region
Name:Alkbh5_1
Description:Mus musculus alkB homolog 5, RNA demethylase , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M15473  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381160,537,688 - 60,537,748EPDNEW
RGD ID:8674884
Promoter ID:EPDNEW_M15473
Type:initiation region
Name:Alkbh5_2
Description:Mus musculus alkB homolog 5, RNA demethylase , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M15472  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381160,538,014 - 60,538,074EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2144489 AgrOrtholog
Ensembl Genes ENSMUSG00000042650 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000044250 ENTREZGENE
  ENSMUST00000044250.4 UniProtKB/Swiss-Prot
Gene3D-CATH 2.60.120.590 UniProtKB/Swiss-Prot
InterPro AlkB-like UniProtKB/Swiss-Prot
  AlkB-like_sf UniProtKB/Swiss-Prot
  ALKBH5 UniProtKB/Swiss-Prot
KEGG Report mmu:268420 UniProtKB/Swiss-Prot
MGD MGI:2144489 ENTREZGENE
NCBI Gene Alkbh5 ENTREZGENE
PANTHER PTHR32074 UniProtKB/Swiss-Prot
  RNA DEMETHYLASE ALKBH5 UniProtKB/Swiss-Prot
Pfam 2OG-FeII_Oxy_2 UniProtKB/Swiss-Prot
PhenoGen Alkbh5 PhenoGen
Superfamily-SCOP Clavaminate synthase-like UniProtKB/Swiss-Prot
UniProt ALKB5_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
  Q80US0 ENTREZGENE
  Q8BKB9 ENTREZGENE
  Q8BKC1 ENTREZGENE
UniProt Secondary Q80US0 UniProtKB/Swiss-Prot
  Q8BKB9 UniProtKB/Swiss-Prot
  Q8BKC1 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2024-08-21 Alkbh5  alkB homolog 5, RNA demethylase  AW050020  expressed sequence AW050020  Symbol and/or name change 5135510 APPROVED
2024-08-21 AW050020  expressed sequence AW050020  Alkbh5  alkB homolog 5, RNA demethylase  Symbol and/or name change 5135510 APPROVED
2016-03-28 Alkbh5  alkB homolog 5, RNA demethylase  AW215868  expressed sequence AW215868  Data merged from RGD:1610536 737654 PROVISIONAL
2015-12-22 Alkbh5  alkB homolog 5, RNA demethylase    alkB, alkylation repair homolog 5 (E. coli)  Symbol and/or name change 5135510 APPROVED