Trappc9 (trafficking protein particle complex 9) - Rat Genome Database

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Gene: Trappc9 (trafficking protein particle complex 9) Mus musculus
Analyze
Symbol: Trappc9
Name: trafficking protein particle complex 9
RGD ID: 1319814
MGI Page MGI
Description: Acts upstream of or within neuron differentiation and positive regulation of NF-kappaB transcription factor activity. Located in cytoplasm. Is expressed in brain. Used to study intellectual disability. Human ortholog(s) of this gene implicated in autosomal recessive intellectual developmental disorder 13. Orthologous to human TRAPPC9 (trafficking protein particle complex subunit 9).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 1810044A24Rik; 2900005P22Rik; 4632408O18Rik; Ibp; Ikk2 binding protein; KIAA1882; mKIAA1882; N; Nibp; NIK and IKK(beta) binding protein; NIK- and IKBKB-binding protein; trafficking protein particle complex subunit 9; TRS1; TRS130
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391572,461,469 - 72,933,086 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1572,461,469 - 72,933,053 (-)EnsemblGRCm39 Ensembl
GRCm381572,589,620 - 73,061,238 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1572,589,620 - 73,061,204 (-)EnsemblGRCm38mm10GRCm38
MGSCv371572,420,050 - 72,891,634 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361573,046,993 - 73,518,251 (-)NCBIMGSCv36mm8
MGSCv361572,416,876 - 72,888,460 (-)NCBIMGSCv36mm8
Celera1574,088,714 - 74,562,121 (-)NCBICelera
Cytogenetic Map15D3NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function
protein binding  (IPI,ISO)

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
abnormal cerebellum morphology  (IAGP)
abnormal cerebral cortex morphology  (IAGP)
abnormal corpus callosum morphology  (IAGP)
abnormal cystic duct morphology  (IEA)
abnormal dopaminergic neuron morphology  (IAGP)
abnormal dorsal root ganglion morphology  (IEA)
abnormal inferior vena cava valve morphology  (IEA)
abnormal infrahyoid muscle connection  (IEA)
abnormal interatrial septum morphology  (IEA)
abnormal lateral ventricle morphology  (IEA)
abnormal medulla oblongata morphology  (IAGP)
abnormal motor learning  (IAGP)
abnormal pons morphology  (IAGP)
abnormal pulmonary valve cusp morphology  (IEA)
abnormal response to novel object  (IAGP)
abnormal response to social novelty  (IAGP)
abnormal social recognition  (IAGP)
abnormal urethra morphology  (IEA)
abnormal vibrissa morphology  (IEA)
absent ductus venosus valve  (IEA)
absent segment of posterior cerebral artery  (IEA)
astrocytosis  (IAGP)
blood in lymph vessels  (IEA)
decreased bone mineral content  (IEA)
decreased brain size  (IAGP)
decreased brain weight  (IAGP)
decreased CD11b-low dendritic cell number  (IEA)
decreased cingulate cortex size  (IAGP)
decreased corpus callosum size  (IAGP)
decreased exploration in new environment  (IAGP)
decreased gamma-delta T cell number  (IEA)
decreased grip strength  (IEA)
decreased hippocampal fimbria size  (IAGP)
decreased hippocampus volume  (IAGP)
decreased KLRG1-positive NK cell number  (IEA)
decreased lean body mass  (IEA)
decreased locomotor activity  (IAGP)
decreased mean corpuscular hemoglobin  (IEA)
decreased primary motor cortex size  (IAGP)
decreased substantia nigra size  (IAGP)
dual inferior vena cava  (IEA)
hemorrhage  (IEA)
heterochrony  (IEA)
hippocampus atrophy  (IAGP)
impaired glucose tolerance  (IAGP)
impaired spatial learning  (IAGP)
increased aggression  (IAGP)
increased body fat mass  (IAGP)
increased body weight  (IAGP)
increased CD11b-high dendritic cell number  (IEA)
increased circulating cholesterol level  (IAGP)
increased circulating glycerol level  (IAGP)
increased circulating HDL cholesterol level  (IAGP)
increased circulating insulin level  (IAGP)
increased circulating LDL cholesterol level  (IAGP)
increased circulating sodium level  (IEA)
increased circulating triglyceride level  (IAGP)
increased fasting circulating glucose level  (IEA)
increased hemangioma incidence  (IEA)
increased lean body mass  (IAGP)
increased Ly6C high monocyte number  (IEA)
increased Ly6C low monocyte number  (IEA)
increased mean platelet volume  (IEA)
increased monocyte cell number  (IEA)
increased red blood cell distribution width  (IEA)
increased striatum size  (IAGP)
increased thigmotaxis  (IAGP)
increased total body fat amount  (IEA)
internal hemorrhage  (IEA)
male infertility  (IAGP)
microcephaly  (IAGP)
multiple persisting craniopharyngeal ducts  (IEA)
obese  (IAGP)
paternal imprinting  (IAGP)
reduced female fertility  (IAGP)
small thalamus  (IAGP)
thoracoschisis  (IEA)
References

References - curated
# Reference Title Reference Citation
1. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:12520002   PMID:14610273   PMID:15368895   PMID:15782199  
PMID:15951441   PMID:16141072   PMID:16141073   PMID:16470246   PMID:17967808   PMID:18799693   PMID:19002213   PMID:19656848   PMID:20004763   PMID:21677750   PMID:21873635   PMID:23716696  
PMID:24011459   PMID:25921334   PMID:26073538   PMID:27066478   PMID:30550785   PMID:31040226   PMID:31453638   PMID:32877400   PMID:33208359   PMID:33500348   PMID:35563289  


Genomics

Comparative Map Data
Trappc9
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391572,461,469 - 72,933,086 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1572,461,469 - 72,933,053 (-)EnsemblGRCm39 Ensembl
GRCm381572,589,620 - 73,061,238 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1572,589,620 - 73,061,204 (-)EnsemblGRCm38mm10GRCm38
MGSCv371572,420,050 - 72,891,634 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361573,046,993 - 73,518,251 (-)NCBIMGSCv36mm8
MGSCv361572,416,876 - 72,888,460 (-)NCBIMGSCv36mm8
Celera1574,088,714 - 74,562,121 (-)NCBICelera
Cytogenetic Map15D3NCBI
TRAPPC9
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh388139,727,725 - 140,458,579 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl8139,727,725 - 140,458,579 (-)EnsemblGRCh38hg38GRCh38
GRCh378140,739,968 - 141,468,678 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 368140,811,770 - 141,537,860 (-)NCBINCBI36Build 36hg18NCBI36
Celera8136,910,795 - 137,637,626 (-)NCBICelera
Cytogenetic Map8q24.3NCBI
HuRef8136,053,781 - 136,779,850 (-)NCBIHuRef
CHM1_18140,782,787 - 141,509,239 (-)NCBICHM1_1
T2T-CHM13v2.08140,847,842 - 141,578,742 (-)NCBIT2T-CHM13v2.0
Trappc9
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.27104,521,593 - 104,998,352 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7104,521,593 - 104,998,352 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx7106,265,280 - 106,740,483 (-)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.07108,486,858 - 108,962,072 (-)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.07108,434,908 - 108,910,101 (-)NCBIRnor_WKY
Rnor_6.07113,986,363 - 114,309,090 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7113,681,793 - 114,305,896 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07113,614,134 - 113,676,676 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.07114,185,706 - 114,244,503 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.07113,923,437 - 114,090,503 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47110,316,543 - 110,796,685 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.17110,498,700 - 110,830,468 (-)NCBI
Celera7100,935,899 - 101,408,042 (-)NCBICelera
Cytogenetic Map7q34NCBI
Trappc9
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495546113,498,671 - 14,124,227 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495546113,498,088 - 14,130,159 (-)NCBIChiLan1.0ChiLan1.0
TRAPPC9
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan18132,654,644 - 133,379,453 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v08136,402,736 - 137,180,507 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.18139,495,813 - 140,267,032 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl8139,644,041 - 140,214,782 (-)Ensemblpanpan1.1panPan2
TRAPPC9
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11334,579,134 - 35,115,508 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1334,579,126 - 35,115,494 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1334,496,817 - 34,982,923 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01334,961,156 - 35,508,264 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1334,961,165 - 35,508,357 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11334,684,318 - 35,228,787 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01334,773,879 - 35,318,617 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01335,193,579 - 35,738,283 (-)NCBIUU_Cfam_GSD_1.0
Trappc9
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244053033,318,751 - 3,816,953 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647010,750,994 - 11,242,523 (+)EnsemblSpeTri2.0
SpeTri2.0NW_00493647010,747,343 - 11,243,052 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TRAPPC9
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl43,065,234 - 3,533,669 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.143,065,254 - 3,533,670 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.242,565,763 - 3,021,011 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TRAPPC9
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.18133,992,020 - 134,698,218 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl8134,471,193 - 134,691,231 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660395,451,103 - 5,681,407 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Trappc9
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473515,897,425 - 16,661,208 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473515,898,189 - 16,661,799 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Trappc9
14745 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1148
Count of miRNA genes:578
Interacting mature miRNAs:685
Transcripts:ENSMUST00000023276, ENSMUST00000089770, ENSMUST00000168191, ENSMUST00000170633
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4141952W3q7_mweight 3 weeks QTL 7 (mouse)Not determined348969478601286Mouse
4142252Tailaq4_mtail length adjusted QTL 4 (mouse)Not determined348969478601286Mouse
4142448Tailq6_mtail length QTL 6 (mouse)Not determined348969478601286Mouse
1357559Scfq2_msubcutaneous fat pad weight QTL 2 (mouse)Not determined15348969478601286Mouse
1357659Epfpq4_mepididymal fat percentage QTL 4 (mouse)Not determined15348969478601286Mouse
26884417Bzwq4_mbi-zygomatic width QTL 4, 5 week (mouse)15612948172471849Mouse
27226786Feml11_mfemur length 11, 5 week (mouse)15612948175871849Mouse
27095932Ulnl11_mulna length 11, 16 week (mouse)15612948176384200Mouse
27226717Tibw4_mtibia width 4, proximal, 10 week (mouse)15612948178684200Mouse
27226734Tibmd5_mtibia midshaft diameter 5, 10 week (mouse)15612948186684201Mouse
26884442Sklq6_mskull length QTL 6, 5 week (mouse)156129481100797881Mouse
27226721Tibw8_mtibia width 8, proximal, 16 week (mouse)15692948175871849Mouse
27226773Tibl16_mtibia length 16, 10 week (mouse)15692948175871849Mouse
27226777Tibl8_mtibia length 8, 5 week (mouse)15692948184584201Mouse
1301433Rapop5_mradiation-induced apoptosis 5 (mouse)Not determined15927302279474762Mouse
1357526Hyplip2_mhyperlipidemia 2 (mouse)Not determined1512402203102896555Mouse
26884425Cvht2_mcranial vault height 2, 5 week (mouse)1528800146102008435Mouse
26884392Humsd8_mhumerus midshaft diameter 8, 16 week (mouse)152930014676084200Mouse
1558985Eae32_mexperimental allergic encephalomyelitis susceptibility 32 (mouse)Not determined1532578416103425899Mouse
27226729Tibmd2_mtibia midshaft diameter 2, 5 week (mouse)153800024486684201Mouse
1301580Hrq2_mheart rate quantitative locus 2 (mouse)Not determined153910039573100593Mouse
26884402Cvht9_mcranial vault height 9, 16 week (mouse)154216339695497881Mouse
1357703Vtbt17_mvertebral trabecular bone trait 17 (mouse)Not determined154455331378553437Mouse
1301568Tria2_mT-cell receptor induced activation 2 (mouse)Not determined154485914178859281Mouse
1357756Alaa4_malopecia areata 4 (mouse)Not determined154638964680389845Mouse
10755515Amzn3_manatomical modifier of Zfp423 3 (mouse)154638964680389845Mouse
1301006Hfib1_mhepatic fibrogenesis 1 (mouse)Not determined154730633481306479Mouse
1301860Gct3_mgranulosa cell tumorigenesis 3 (mouse)Not determined154740959681409691Mouse
26884397Humsd5_mhumerus midshaft diameter 5, 10 week (mouse)154836339698397881Mouse
26884399Humsd1_mhumerus midshaft diameter 1, 5 week (mouse)1548363396101708435Mouse
1301429Pcir3_mperiosteal circumference 3 (mouse)Not determined154846536282465496Mouse
1301779Dpml_mdopamine loss (mouse)Not determined155100469476794493Mouse
4142198Hbtq_mhabituation QTL (mouse)Not determined155116070885160833Mouse
10045637Heal27_mwound healing/regeneration 29 (mouse)Not determined155141836185418511Mouse
10412067Pain2_mpain 2 (mouse)Not determined155164533985645626Mouse
1302080Szs13_mseizure susceptibility 13 (mouse)Not determined155168583285694449Mouse
1301708Cocrb14_mcocaine related behavior 14 (mouse)Not determined155180651585806651Mouse
38501067Tip3_mtuberculosis immunophenotype 3, IFN-g level (mouse)155356339689584203Mouse
13504731Cath5_mcarotid atherosclerosis 5 (mouse)155478912988789129Mouse
1302074Bmd4_mbone mineral density 4 (mouse)Not determined1556186708103425899Mouse
27095936Ulnl4_mulna length 4, 5 week (mouse)155676339687684201Mouse
1300800Ses3_msalmonella enteritidis susceptibility 3 (mouse)Not determined155711700591117153Mouse
1357407Pfat4_mpredicted fat percentage 4 (mouse)8.6Body fat amountpredicted fat percentage155711700591117153Mouse
12880420V25Dq8_mvitamin D inactive form serum level QTL 8 (mouse)156158420095584200Mouse
1301601Faq9_mfluctuating asymmetry QTL 9 (mouse)Not determined156316390397163995Mouse
1558786Msq1_mMAV-1 susceptibility QTL 1 (mouse)Not determined156338964681086436Mouse
1302197Bhr2_mbronchial hyperresponsiveness 2 (mouse)Not determined1564306334103425899Mouse
4141135Cia35_mcollagen induced arthritis 35 (mouse)Not determined156481182698811946Mouse
1301119Drb7_mdopamine receptor binding 7 (mouse)Not determined156533657899341028Mouse
1301171Brm2_mbrachyury modifier 2 (mouse)Not determined156552537699525499Mouse
4141921Pstc3_mperiosteal circumference 3 (mouse)Not determined1567270698101270847Mouse
1300627Sluc26_msusceptibility to lung cancer 26 (mouse)Not determined1570345653104073951Mouse
1300648Dbsty4_mdiabesity 4 (mouse)Not determined1570349271104073951Mouse
1300726Pitm4_mprion incubation time 4 (mouse)Not determined1570349271104073951Mouse
13801031Hwtf1_mheart weight by femur 1 (mouse)157167184972871849Mouse
25671381Hrsq3_mhost response to SARS QTL 3, eosinophilia (mouse)157214453975844833Mouse
1300844Emo2_memotionality 2 (mouse)Not determined157237245976794493Mouse
1302002Cocia2_mcocaine induced activation 2 (mouse)Not determined157237245979899178Mouse
14747011Mancz13_mmandible centroid size 13 (mouse)1572382669104073951Mouse

Markers in Region
38.MHAa91h2.seq  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381572,599,893 - 72,600,049UniSTSGRCm38
MGSCv371572,430,323 - 72,430,479UniSTSGRCm37
Celera1574,098,989 - 74,099,145UniSTS
Cytogenetic Map15D3UniSTS
Whitehead_YAC15 UniSTS
D15Mit169  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381572,816,943 - 72,817,073UniSTSGRCm38
MGSCv371572,647,373 - 72,647,503UniSTSGRCm37
Celera1574,316,862 - 74,316,992UniSTS
Cytogenetic Map15D3UniSTS
cM Map1541.9UniSTS
Whitehead Genetic1532.8UniSTS
UniSTS:237316  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381572,589,917 - 72,590,032UniSTSGRCm38
MGSCv371572,420,347 - 72,420,462UniSTSGRCm37
Celera1574,089,011 - 74,089,126UniSTS
Cytogenetic Map15D3UniSTS
UniSTS:237319  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381572,941,476 - 72,941,752UniSTSGRCm38
MGSCv371572,771,906 - 72,772,182UniSTSGRCm37
Celera1574,442,606 - 74,442,882UniSTS
Cytogenetic Map15D3UniSTS
Peg13  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381572,807,579 - 72,808,075UniSTSGRCm38
Celera1574,307,498 - 74,307,994UniSTS
Cytogenetic Map15D3UniSTS
cM Map1533.86UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001164641 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001164643 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_029640 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_180662 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006521527 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017316788 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001781576 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC113063 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC118008 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC118234 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC118640 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC163100 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AEKQ02100821 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK007766 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK013485 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK028504 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK029106 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK031788 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK138682 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK156739 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK173287 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK177847 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK178042 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK178109 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK185998 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK187345 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK190132 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK194204 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK196878 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK202802 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK204163 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK214967 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK214984 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK217666 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY630620 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC019994 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC034590 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC038938 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC070463 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466545 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000023276   ⟹   ENSMUSP00000023276
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1572,461,469 - 72,927,659 (-)Ensembl
GRCm38.p6 Ensembl1572,589,620 - 73,055,810 (-)Ensembl
RefSeq Acc Id: ENSMUST00000089770   ⟹   ENSMUSP00000087202
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1572,461,469 - 72,933,053 (-)Ensembl
GRCm38.p6 Ensembl1572,589,620 - 73,061,204 (-)Ensembl
RefSeq Acc Id: ENSMUST00000170633   ⟹   ENSMUSP00000131997
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1572,671,373 - 72,932,894 (-)Ensembl
GRCm38.p6 Ensembl1572,799,524 - 73,061,045 (-)Ensembl
RefSeq Acc Id: ENSMUST00000228960   ⟹   ENSMUSP00000155105
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1572,865,656 - 72,932,899 (-)Ensembl
GRCm38.p6 Ensembl1572,993,807 - 73,061,050 (-)Ensembl
RefSeq Acc Id: ENSMUST00000230025
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1572,813,256 - 72,932,899 (-)Ensembl
GRCm38.p6 Ensembl1572,941,407 - 73,061,050 (-)Ensembl
RefSeq Acc Id: ENSMUST00000230270
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1572,724,018 - 72,932,894 (-)Ensembl
GRCm38.p6 Ensembl1572,852,169 - 73,061,045 (-)Ensembl
RefSeq Acc Id: ENSMUST00000240670
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1572,461,469 - 72,667,651 (-)Ensembl
RefSeq Acc Id: ENSMUST00000240671   ⟹   ENSMUSP00000159497
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1572,461,469 - 72,681,801 (-)Ensembl
RefSeq Acc Id: NM_001164641   ⟹   NP_001158113
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391572,671,373 - 72,933,053 (-)NCBI
GRCm381572,799,524 - 73,061,204 (-)NCBI
MGSCv371572,420,050 - 72,891,634 (-)RGD
Celera1574,088,714 - 74,562,121 (-)RGD
cM Map15 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001164643   ⟹   NP_001158115
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391572,865,666 - 72,933,053 (-)NCBI
GRCm381572,993,817 - 73,061,204 (-)NCBI
MGSCv371572,420,050 - 72,891,634 (-)RGD
Celera1574,088,714 - 74,562,121 (-)RGD
cM Map15 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_029640   ⟹   NP_083916
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391572,461,469 - 72,927,661 (-)NCBI
GRCm381572,589,620 - 73,055,812 (-)NCBI
MGSCv371572,420,050 - 72,891,634 (-)RGD
Celera1574,088,714 - 74,562,121 (-)RGD
cM Map15 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_180662   ⟹   NP_850993
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391572,461,469 - 72,933,053 (-)NCBI
GRCm381572,589,620 - 73,061,204 (-)NCBI
MGSCv371572,420,050 - 72,891,634 (-)RGD
Celera1574,088,714 - 74,562,121 (-)RGD
cM Map15 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006521527   ⟹   XP_006521590
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391572,461,469 - 72,933,086 (-)NCBI
GRCm381572,589,620 - 73,061,238 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017316788   ⟹   XP_017172277
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391572,461,469 - 72,927,672 (-)NCBI
GRCm381572,589,620 - 73,055,807 (-)NCBI
Sequence:
RefSeq Acc Id: XR_001781576
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391572,462,600 - 72,933,047 (-)NCBI
GRCm381572,590,751 - 73,061,198 (-)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: NP_850993   ⟸   NM_180662
- Peptide Label: isoform 2
- UniProtKB: Q3U0M1 (UniProtKB/Swiss-Prot),   A0A8C6HNT7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_083916   ⟸   NM_029640
- Peptide Label: isoform 1
- UniProtKB: Q3U0M1 (UniProtKB/Swiss-Prot),   A0A8C6HQ97 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001158113   ⟸   NM_001164641
- Peptide Label: isoform 3
- UniProtKB: Q3U0M1 (UniProtKB/Swiss-Prot),   E9Q3T8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001158115   ⟸   NM_001164643
- Peptide Label: isoform 5
- UniProtKB: Q3U0M1 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006521590   ⟸   XM_006521527
- Peptide Label: isoform X1
- UniProtKB: Q9D8R6 (UniProtKB/Swiss-Prot),   Q3U0M1 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_017172277   ⟸   XM_017316788
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: ENSMUSP00000131997   ⟸   ENSMUST00000170633
RefSeq Acc Id: ENSMUSP00000087202   ⟸   ENSMUST00000089770
RefSeq Acc Id: ENSMUSP00000155105   ⟸   ENSMUST00000228960
RefSeq Acc Id: ENSMUSP00000023276   ⟸   ENSMUST00000023276
RefSeq Acc Id: ENSMUSP00000159497   ⟸   ENSMUST00000240671

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q3U0M1-F1-model_v2 AlphaFold Q3U0M1 1-1148 view protein structure

Promoters
RGD ID:6825583
Promoter ID:MM_KWN:18694
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day3,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000063060,   NM_001164641,   NM_001164642,   NM_001164643,   NM_180662_TRAPPC9,   UC007WBP.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361572,891,324 - 72,891,824 (-)MPROMDB
RGD ID:8683908
Promoter ID:EPDNEW_M19985
Type:single initiation site
Name:Trappc9_2
Description:Mus musculus trafficking protein particle complex 9 , transcriptvariant 5, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M19986  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381573,055,880 - 73,055,940EPDNEW
RGD ID:8683910
Promoter ID:EPDNEW_M19986
Type:initiation region
Name:Trappc9_1
Description:Mus musculus trafficking protein particle complex 9 , transcriptvariant 5, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M19985  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381573,061,045 - 73,061,105EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1923760 AgrOrtholog
Ensembl Genes ENSMUSG00000047921 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000023276 ENTREZGENE
  ENSMUSP00000023276.9 UniProtKB/Swiss-Prot
  ENSMUSP00000087202 ENTREZGENE
  ENSMUSP00000087202.4 UniProtKB/Swiss-Prot
  ENSMUSP00000131997 ENTREZGENE
  ENSMUSP00000131997.2 UniProtKB/TrEMBL
  ENSMUSP00000155105 ENTREZGENE
  ENSMUSP00000155105.2 UniProtKB/Swiss-Prot
  ENSMUSP00000159497.1 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000023276 ENTREZGENE
  ENSMUST00000023276.16 UniProtKB/Swiss-Prot
  ENSMUST00000089770 ENTREZGENE
  ENSMUST00000089770.11 UniProtKB/Swiss-Prot
  ENSMUST00000170633 ENTREZGENE
  ENSMUST00000170633.9 UniProtKB/TrEMBL
  ENSMUST00000228960 ENTREZGENE
  ENSMUST00000228960.2 UniProtKB/Swiss-Prot
  ENSMUST00000240671.1 UniProtKB/TrEMBL
InterPro TRAPP_II_complex_Trs120 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:76510 UniProtKB/Swiss-Prot
MGD MGI:1923760 ENTREZGENE
NCBI Gene 76510 ENTREZGENE
PANTHER PTHR21512 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TRAFFICKING PROTEIN PARTICLE COMPLEX SUBUNIT 9 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam TRAPPC9-Trs120 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Trappc9 PhenoGen
UniProt A0A8C6HNT7 ENTREZGENE
  A0A8C6HQ97 ENTREZGENE
  A0A8V5KY88_MOUSE UniProtKB/TrEMBL
  E9Q3T8 ENTREZGENE, UniProtKB/TrEMBL
  Q3U0M1 ENTREZGENE
  Q9D8R6 ENTREZGENE
  TPPC9_MOUSE UniProtKB/Swiss-Prot
UniProt Secondary Q3UU81 UniProtKB/Swiss-Prot
  Q69Z79 UniProtKB/Swiss-Prot
  Q6NS50 UniProtKB/Swiss-Prot
  Q8CD01 UniProtKB/Swiss-Prot
  Q8CFV8 UniProtKB/Swiss-Prot
  Q9D8R6 UniProtKB/Swiss-Prot