Tnip1 (TNFAIP3 interacting protein 1) - Rat Genome Database

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Gene: Tnip1 (TNFAIP3 interacting protein 1) Mus musculus
Analyze
Symbol: Tnip1
Name: TNFAIP3 interacting protein 1
RGD ID: 1319698
MGI Page MGI
Description: Enables polyubiquitin modification-dependent protein binding activity. Involved in negative regulation of canonical NF-kappaB signal transduction; positive regulation of defense response; and positive regulation of transcription by RNA polymerase II. Located in cytoplasm. Is expressed in several structures, including alimentary system; brain; cardiovascular system; genitourinary system; and hemolymphoid system. Orthologous to human TNIP1 (TNFAIP3 interacting protein 1).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: A20-binding inhibitor of NF-kappa B activation; A20-binding inhibitor of NF-kappa-B activation; A20-binding inhibitor of NF-kappa-B activation 1; AB; ABIN; ABIN-1; ABIN1; AU018810; mVAN; Naf1; Ne; Nef; Nef-associated factor 1; TNFAIP3-interacting protein 1; VAN; virion-associated nuclear shuttling protein
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391154,801,613 - 54,853,766 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1154,801,611 - 54,853,743 (-)EnsemblGRCm39 Ensembl
GRCm381154,910,787 - 54,962,956 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1154,910,785 - 54,962,917 (-)EnsemblGRCm38mm10GRCm38
MGSCv371154,724,289 - 54,776,440 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361154,754,210 - 54,806,335 (-)NCBIMGSCv36mm8
Celera1159,500,207 - 59,552,322 (-)NCBICelera
Cytogenetic Map11B1.3NCBI
cM Map1132.13NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(1->4)-beta-D-glucan  (EXP)
1,1-dichloroethene  (EXP)
1,2-dichloroethane  (EXP)
1,2-dimethylhydrazine  (EXP)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
4-hydroxyphenyl retinamide  (EXP)
acrolein  (ISO)
acrylamide  (ISO)
all-trans-retinoic acid  (ISO)
alpha-pinene  (ISO)
antimycin A  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
azoxystrobin  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
bisphenol A  (ISO)
C60 fullerene  (ISO)
caffeine  (ISO)
captan  (EXP)
carbon nanotube  (EXP)
CGP 52608  (ISO)
choline  (EXP)
chrysene  (EXP)
cobalt dichloride  (ISO)
copper atom  (EXP,ISO)
copper(0)  (EXP,ISO)
corosolic acid  (ISO)
crocidolite asbestos  (ISO)
cyclosporin A  (ISO)
dioxygen  (ISO)
disodium selenite  (ISO)
disulfiram  (EXP,ISO)
doxorubicin  (ISO)
endosulfan  (ISO)
ethanol  (EXP)
folic acid  (EXP)
folpet  (EXP)
hydrogen peroxide  (ISO)
L-methionine  (EXP)
lipopolysaccharide  (EXP,ISO)
methotrexate  (ISO)
methoxychlor  (ISO)
mithramycin  (ISO)
nickel atom  (ISO)
nickel dichloride  (ISO)
ozone  (ISO)
paracetamol  (EXP,ISO)
perfluorooctane-1-sulfonic acid  (EXP)
picoxystrobin  (ISO)
pirinixic acid  (EXP)
resveratrol  (ISO)
rotenone  (ISO)
S-(1,2-dichlorovinyl)-L-cysteine  (ISO)
serpentine asbestos  (ISO)
silicon dioxide  (EXP,ISO)
silver atom  (EXP)
silver(0)  (EXP)
sodium arsenite  (ISO)
sodium dichromate  (EXP)
succimer  (EXP)
sunitinib  (ISO)
tetrachloromethane  (EXP)
thimerosal  (ISO)
thiram  (ISO)
triphenyl phosphate  (ISO)
triptonide  (EXP)
tungsten  (EXP)
tunicamycin  (ISO)
valproic acid  (ISO)
vancomycin  (EXP)
vinclozolin  (ISO)
vorinostat  (ISO)
zoledronic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (IDA)
cytosol  (ISO)
nucleoplasm  (ISO)
nucleus  (IEA)

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
abnormal blood vessel morphology  (IAGP)
abnormal complement pathway  (IAGP)
abnormal effector T cell morphology  (IAGP)
abnormal hematopoietic stem cell physiology  (IAGP)
abnormal immune system morphology  (IAGP)
abnormal intestine morphology  (IAGP)
abnormal leukocyte morphology  (IAGP)
abnormal Peyer's patch morphology  (IAGP)
abnormal plasma cell morphology  (IAGP)
abnormal spleen germinal center morphology  (IAGP)
anemia  (IAGP)
bile duct hyperplasia  (IAGP)
cachexia  (IAGP)
decreased B cell number  (IEA)
decreased B-2 B cell number  (IEA)
decreased body size  (IAGP)
decreased body weight  (IAGP)
decreased circulating cholesterol level  (IEA)
decreased circulating fructosamine level  (IEA)
decreased circulating glucose level  (IEA)
decreased circulating HDL cholesterol level  (IEA)
decreased circulating iron level  (IEA)
decreased circulating serum albumin level  (IEA)
decreased circulating triglyceride level  (IEA)
decreased erythrocyte cell number  (IEA)
decreased fetal size  (IAGP)
decreased fetal weight  (IAGP)
decreased hematocrit  (IAGP)
decreased hemoglobin content  (IAGP)
decreased interleukin-12 secretion  (IAGP)
decreased interleukin-12b secretion  (IAGP)
decreased lymphocyte cell number  (IEA)
enlarged lymph nodes  (IAGP)
enlarged spleen  (IAGP)
glomerulonephritis  (IAGP)
increased anti-double stranded DNA antibody level  (IAGP)
increased anti-nuclear antigen antibody level  (IAGP)
increased B cell number  (IAGP)
increased B cell proliferation  (IAGP)
increased B-1a cell number  (IEA)
increased B-1b cell number  (IEA)
increased basophil cell number  (IEA)
increased circulating alanine transaminase level  (IEA)
increased circulating alkaline phosphatase level  (IEA)
increased circulating aspartate transaminase level  (IEA)
increased circulating potassium level  (IEA)
increased dendritic cell number  (IEA)
increased fibroblast apoptosis  (IAGP)
increased freezing behavior  (IEA)
increased germinal center B cell number  (IAGP)
increased granulocyte number  (IAGP)
increased hepatocyte apoptosis  (IAGP)
increased IgA level  (IAGP)
increased IgE level  (IAGP)
increased IgG level  (IAGP)
increased IgG1 level  (IAGP)
increased IgG2a level  (IAGP)
increased IgG2b level  (IAGP)
increased IgG3 level  (IAGP)
increased IgM level  (IAGP)
increased immunoglobulin level  (IAGP)
increased interleukin-12 secretion  (IAGP)
increased interleukin-12b secretion  (IAGP)
increased interleukin-23 secretion  (IAGP)
increased interleukin-6 secretion  (IAGP)
increased large unstained cell number  (IEA)
increased macrophage cell number  (IEA)
increased mean corpuscular hemoglobin  (IEA)
increased mean corpuscular hemoglobin concentration  (IEA)
increased mean platelet volume  (IEA)
increased memory T cell number  (IAGP)
increased monocyte cell number  (IAGP)
increased neutrophil cell number  (IAGP)
increased plasma cell number  (IAGP)
increased plasmacytoid dendritic cell number  (IAGP)
increased red blood cell distribution width  (IEA)
increased spleen red pulp amount  (IAGP)
increased spleen weight  (IAGP)
increased spleen white pulp amount  (IAGP)
increased susceptibility to induced colitis  (IEA)
increased susceptibility to systemic lupus erythematosus  (IAGP)
increased T follicular helper cell number  (IAGP)
increased tumor necrosis factor secretion  (IAGP)
increased urine protein level  (IAGP)
liver fibrosis  (IAGP)
liver hypoplasia  (IAGP)
lymph node hyperplasia  (IAGP)
pallor  (IAGP)
perinatal lethality, incomplete penetrance  (IAGP)
premature death  (IAGP)
prenatal lethality, incomplete penetrance  (IAGP)
prolonged RR interval  (IEA)
spleen hyperplasia  (IAGP)
thrombocytopenia  (IEA)
vascular inflammation  (IAGP)
References

References - curated
# Reference Title Reference Citation
1. MGDs mouse GO annotations MGD data from the GO Consortium
2. Mouse MP Annotation Import Pipeline RGD automated import pipeline
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:10385526   PMID:10725249   PMID:10922068   PMID:11042159   PMID:11044607   PMID:11076861   PMID:11090181   PMID:11217851   PMID:12466851   PMID:12477932   PMID:12520002  
PMID:12586352   PMID:12904583   PMID:14610273   PMID:15368895   PMID:15489334   PMID:15722346   PMID:15782199   PMID:16141072   PMID:16141073   PMID:17967808   PMID:18212736   PMID:18799693  
PMID:19060883   PMID:21267068   PMID:21606507   PMID:21873635   PMID:21885437   PMID:21967852   PMID:22011580   PMID:23785118   PMID:24194600   PMID:25648164   PMID:27671649   PMID:27807192  
PMID:28190767   PMID:28935578   PMID:29203883   PMID:29237725   PMID:29709475   PMID:29930103   PMID:30108181   PMID:30341420   PMID:31694920   PMID:32554809   PMID:33542218   PMID:34031190  
PMID:34470858   PMID:34544877   PMID:35077396   PMID:36034412   PMID:38009796   PMID:38355793   PMID:38877170  


Genomics

Comparative Map Data
Tnip1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391154,801,613 - 54,853,766 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1154,801,611 - 54,853,743 (-)EnsemblGRCm39 Ensembl
GRCm381154,910,787 - 54,962,956 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1154,910,785 - 54,962,917 (-)EnsemblGRCm38mm10GRCm38
MGSCv371154,724,289 - 54,776,440 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361154,754,210 - 54,806,335 (-)NCBIMGSCv36mm8
Celera1159,500,207 - 59,552,322 (-)NCBICelera
Cytogenetic Map11B1.3NCBI
cM Map1132.13NCBI
TNIP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385151,029,943 - 151,087,685 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5151,029,945 - 151,093,577 (-)EnsemblGRCh38hg38GRCh38
GRCh375150,409,504 - 150,467,246 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 365150,389,699 - 150,441,190 (-)NCBINCBI36Build 36hg18NCBI36
Build 345150,389,709 - 150,440,842NCBI
Celera5146,490,845 - 146,542,340 (-)NCBICelera
Cytogenetic Map5q33.1NCBI
HuRef5145,555,312 - 145,613,010 (-)NCBIHuRef
CHM1_15149,842,296 - 149,900,016 (-)NCBICHM1_1
T2T-CHM13v2.05151,566,421 - 151,624,171 (-)NCBIT2T-CHM13v2.0
Tnip1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81039,537,759 - 39,585,038 (-)NCBIGRCr8
mRatBN7.21039,037,048 - 39,084,328 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1039,037,058 - 39,077,625 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1043,725,512 - 43,772,420 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01043,215,588 - 43,262,498 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01038,719,300 - 38,766,195 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01040,255,776 - 40,303,092 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1040,255,776 - 40,296,470 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01040,028,044 - 40,075,239 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41040,319,735 - 40,366,764 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11040,333,361 - 40,380,387 (-)NCBI
Celera1038,375,087 - 38,422,139 (-)NCBICelera
Cytogenetic Map10q22NCBI
Tnip1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554082,594,756 - 2,621,304 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554082,575,324 - 2,621,845 (+)NCBIChiLan1.0ChiLan1.0
TNIP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24146,261,722 - 146,316,360 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15144,400,502 - 144,455,917 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05146,457,347 - 146,514,515 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15152,459,868 - 152,510,540 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5152,459,868 - 152,510,540 (-)Ensemblpanpan1.1panPan2
TNIP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1458,150,734 - 58,200,158 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl458,149,882 - 58,199,644 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha457,902,679 - 57,951,877 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0458,588,813 - 58,638,281 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl458,587,946 - 58,638,594 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1458,406,693 - 58,455,880 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0458,505,144 - 58,554,566 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0459,008,672 - 59,057,916 (+)NCBIUU_Cfam_GSD_1.0
Tnip1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213116,912,127 - 116,956,907 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366473,914,887 - 3,959,672 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366473,914,887 - 3,959,698 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TNIP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1671,926,133 - 71,979,966 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11671,926,038 - 71,979,969 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21678,291,420 - 78,345,241 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TNIP1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12353,586,243 - 53,643,599 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2353,587,008 - 53,621,489 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603424,071,417 - 24,128,708 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tnip1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462473340,964,020 - 41,006,381 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Tnip1
1943 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:3272
Count of miRNA genes:613
Interacting mature miRNAs:781
Transcripts:ENSMUST00000018482, ENSMUST00000102730, ENSMUST00000102731, ENSMUST00000108885, ENSMUST00000108886, ENSMUST00000108889, ENSMUST00000124304, ENSMUST00000126703, ENSMUST00000132224, ENSMUST00000132776, ENSMUST00000151736, ENSMUST00000155316
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357844Si5lq5_mserum IGFBP-5 level QTL 5 (mouse)Not determined112816587362165976Mouse
4141367Inf1_macute ozone induced inflammation (mouse)Not determined44630038113058009Mouse
1357720Kidpq1_mkidney weight percentage QTL 1 (mouse)Not determined111226863768500330Mouse
1300765Bbaa4_mB.burgdorferi-associated arthritis 4 (mouse)Not determined114618516780185262Mouse
1357851Scfq3_msubcutaneous fat pad weight QTL 3 (mouse)Not determined111226863768500330Mouse
1301788Lbw8_mlupus NZB x NZW 8 (mouse)Not determined113650328770509492Mouse
27226762Feml21_mfemur length 21, 16 week (mouse)111175000065990826Mouse
1302021Nidd1n_mnon-insulin-dependent diabetes mellitus 1 in NSY (mouse)Not determined114516587379978324Mouse
1301896Tria1_mT-cell receptor induced activation 1 (mouse)Not determined113661356570613855Mouse
4141470Egq4_mearly growth QTL 4 (mouse)Not determined1226863768500330Mouse
1301426Desp2_mdespair 2 (mouse)Not determined112870858162708700Mouse
4142109W10q2_mweight 10 weeks QTL 2 (mouse)Not determined1226863768500330Mouse
4141853Skmw17_mskeletal muscle weight 17 (mouse)Not determined113708094171081064Mouse
1357878Mastr_mmodifier of astrocytoma (mouse)Not determined114570858189818733Mouse
4141084Spqq1_msperm quality QTL 1 (mouse)Not determined5406567063319522Mouse
13208559Wght10_mweight 10 (mouse)11395000088890826Mouse
13524840Ppiq9a_mprepulse inhibition QTL 9a (mouse)115249438586494385Mouse
13208558Lgth12_mbody length 12 (mouse)11395000094890826Mouse
26884401Huml4_mhumerus length 4, 10 week (mouse)111155000068490826Mouse
10053687Eae6_msusceptibility to experimental allergic encephalomyelitis 6 (mouse)Not determined111778196668500330Mouse
13208569Bmiq10_mbody mass index QTL 10 (mouse)113589082784890826Mouse
27226798Scvln18_msacral vertebrae length 2, 16 week (mouse)11325000060690826Mouse
4141582Lgaq1_mlate growth adjusted QTL 1 (mouse)Not determined1226863768500330Mouse
4141966Tailq1_mtail length QTL 1 (mouse)Not determined1226863768500330Mouse
4142475Ity2a_mimmunity to S. typhimurium 2a (mouse)Not determined113776858060402716Mouse
11532699Sluc36b_msusceptibility to lung cancer 36b (mouse)114225661776256730Mouse
11532698Sluc36a_msusceptibility to lung cancer 36a (mouse)114225661776256730Mouse
1300774Pgia7_mproteoglycan induced arthritis 7 (mouse)Not determined115339058887390737Mouse
1558945Orgwq8_morgan weight QTL 8 (mouse)Not determined111705617567078411Mouse
4142216Lgq1_mlate growth QTL 1 (mouse)Not determined1226863768500330Mouse
1302186Blmpf2_mbleomycin-induced pulmonary fibrosis 2 (mouse)Not determined115406567067078411Mouse
4141830Pregq1_mpregnancy QTL 1 (mouse)Not determined115412675283733652Mouse
1300905Scc6_mcolon tumor susceptibility 6 (mouse)Not determined11688027789019734Mouse
13524848Ppiq7_mprepulse inhibition QTL 7 (mouse)112856914762569147Mouse
1357782Char8_mP. chabaudi malaria resistance QTL 8 (mouse)Not determined113557861669684987Mouse
39128214Lwq20_mliver weight QTL 20 (mouse)1112268637118022724Mouse
11059563Lmr31_mleishmaniasis resistance 31 (mouse)113210057766100694Mouse
1301328Mol4_mmodifier of LPS-response 4 (mouse)Not determined113628257783481356Mouse
26884446Sklq10_mskull length QTL 10, 10 week (mouse)11325000062890826Mouse
10412246Dfs2_mdental fluorosis suseptibility 2 (mouse)Not determined112180736495881231Mouse
1559002Lmrq4_mLeishmania major resistance QTL 4 (mouse)Not determined111226863769684947Mouse
1301830Ssta4_msusceptibility to Salmonella typhimurium antigens 4 (mouse)Not determined115007819184078411Mouse
4142308W6q3_mweight 6 weeks QTL 3 (mouse)Not determined111226863768500330Mouse
1357640Orq2_movulation rate QTL 2 (mouse)Not determined111226863768500330Mouse
10766457Nwa3_mNew Zealand White autoimmunity 3 (mouse)113801611572016209Mouse
4142300Ctrq3_mC. trachomatis resistance QTL 3 (mouse)Not determined114463003876854757Mouse
1357437Epfq4_mepididymal fat pad weight QTL 4 (mouse)Not determined111226863768500330Mouse
4141398Tgq22_mtriglyceride QTL 22 (mouse)Not determined2116340655163406Mouse
27226738Metcl11_mmetatarsal-calcaneal length 11, 10 week (mouse)11885000061390826Mouse
11522752Cocia18_mcocaine-induced activity, QTL 18 (mouse)113100820965008209Mouse
1301988Bmd11_mbone mineral density 11 (mouse)Not determined114631940780319522Mouse
4141127W3q4_mweight 3 weeks QTL 4 (mouse)Not determined1226863768500330Mouse
4141894Nidd6k_mNidd6 on KK-A (mouse)Not determined1912420496897826Mouse
4142148Ckdbp2_mchronic kidney disease blood pressure locus 2 (mouse)Not determined115408094165103841Mouse
26884453Sklq16_mskull length QTL 16, 16 week (mouse)11325000072690826Mouse
10044006Hbnr13_mHeligmosomoides bakeri nematode resistance 13 (mouse)Not determined112577262659772741Mouse

Markers in Region
RH136278  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381154,911,130 - 54,911,340UniSTSGRCm38
MGSCv371154,724,632 - 54,724,842UniSTSGRCm37
Celera1159,500,550 - 59,500,760UniSTS
Cytogenetic Map11B1.3UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001199275 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001199276 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001271455 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001271456 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_021327 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006533846 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006533847 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006533848 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011249162 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011249163 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011249164 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030246196 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030246197 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030246199 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AA733777 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ242777 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ242778 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK135338 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK156131 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK170841 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK172890 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK177121 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK177650 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK178041 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK182667 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK182902 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK183103 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK183621 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK184264 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK186659 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK186819 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK188071 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK188523 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK193440 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK194753 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK195559 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK199662 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK199664 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK206450 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK206868 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK207423 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK208160 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK208376 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK214955 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK215459 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK215543 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK217156 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK217584 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK217948 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL593846 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AX011241 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AX658663 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY012159 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC008186 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC008665 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BQ030862 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY170310 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY197901 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CB599739 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466575 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CJ175540 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CS362846 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000018482   ⟹   ENSMUSP00000018482
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1154,801,613 - 54,853,738 (-)Ensembl
GRCm38.p6 Ensembl1154,910,787 - 54,962,912 (-)Ensembl
Ensembl Acc Id: ENSMUST00000102730   ⟹   ENSMUSP00000099791
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1154,801,613 - 54,853,736 (-)Ensembl
GRCm38.p6 Ensembl1154,910,787 - 54,962,910 (-)Ensembl
Ensembl Acc Id: ENSMUST00000102731   ⟹   ENSMUSP00000099792
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1154,801,613 - 54,853,743 (-)Ensembl
GRCm38.p6 Ensembl1154,910,787 - 54,962,917 (-)Ensembl
Ensembl Acc Id: ENSMUST00000108885   ⟹   ENSMUSP00000104513
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1154,801,615 - 54,853,735 (-)Ensembl
GRCm38.p6 Ensembl1154,910,789 - 54,962,909 (-)Ensembl
Ensembl Acc Id: ENSMUST00000108886   ⟹   ENSMUSP00000104514
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1154,801,613 - 54,853,742 (-)Ensembl
GRCm38.p6 Ensembl1154,910,787 - 54,962,916 (-)Ensembl
Ensembl Acc Id: ENSMUST00000108889   ⟹   ENSMUSP00000104517
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1154,801,611 - 54,846,948 (-)Ensembl
GRCm38.p6 Ensembl1154,910,785 - 54,956,122 (-)Ensembl
Ensembl Acc Id: ENSMUST00000124304
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1154,801,613 - 54,846,930 (-)Ensembl
GRCm38.p6 Ensembl1154,910,787 - 54,956,104 (-)Ensembl
Ensembl Acc Id: ENSMUST00000126703   ⟹   ENSMUSP00000122836
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1154,817,530 - 54,846,948 (-)Ensembl
GRCm38.p6 Ensembl1154,926,704 - 54,956,122 (-)Ensembl
Ensembl Acc Id: ENSMUST00000132224
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1154,809,437 - 54,811,901 (-)Ensembl
GRCm38.p6 Ensembl1154,918,611 - 54,921,075 (-)Ensembl
Ensembl Acc Id: ENSMUST00000132776
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1154,831,439 - 54,853,735 (-)Ensembl
GRCm38.p6 Ensembl1154,940,613 - 54,962,909 (-)Ensembl
Ensembl Acc Id: ENSMUST00000151736
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1154,831,385 - 54,846,913 (-)Ensembl
GRCm38.p6 Ensembl1154,940,559 - 54,956,087 (-)Ensembl
Ensembl Acc Id: ENSMUST00000155316   ⟹   ENSMUSP00000116721
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1154,824,839 - 54,846,873 (-)Ensembl
GRCm38.p6 Ensembl1154,934,013 - 54,956,047 (-)Ensembl
RefSeq Acc Id: NM_001199275   ⟹   NP_001186204
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391154,801,613 - 54,853,766 (-)NCBI
GRCm381154,910,787 - 54,962,940 (-)NCBI
Celera1159,500,207 - 59,552,324 (-)ENTREZGENE
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001199276   ⟹   NP_001186205
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391154,801,613 - 54,853,766 (-)NCBI
GRCm381154,910,787 - 54,962,940 (-)NCBI
Celera1159,500,207 - 59,552,324 (-)ENTREZGENE
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001271455   ⟹   NP_001258384
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391154,801,613 - 54,853,766 (-)NCBI
GRCm381154,910,787 - 54,962,940 (-)NCBI
Celera1159,500,207 - 59,552,324 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001271456   ⟹   NP_001258385
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391154,801,613 - 54,853,766 (-)NCBI
GRCm381154,910,787 - 54,962,940 (-)NCBI
Celera1159,500,207 - 59,552,324 (-)NCBI
Sequence:
RefSeq Acc Id: NM_021327   ⟹   NP_067302
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391154,801,613 - 54,853,766 (-)NCBI
GRCm381154,910,787 - 54,962,940 (-)NCBI
MGSCv371154,724,289 - 54,776,440 (-)RGD
Celera1159,500,207 - 59,552,324 (-)ENTREZGENE
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006533846   ⟹   XP_006533909
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391154,801,613 - 54,846,937 (-)NCBI
GRCm381154,910,787 - 54,956,114 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006533847   ⟹   XP_006533910
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391154,801,613 - 54,846,937 (-)NCBI
GRCm381154,910,787 - 54,956,114 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006533848   ⟹   XP_006533911
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391154,801,613 - 54,846,953 (-)NCBI
GRCm381154,910,787 - 54,956,127 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011249162   ⟹   XP_011247464
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391154,801,613 - 54,846,999 (-)NCBI
GRCm381154,910,787 - 54,956,173 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011249163   ⟹   XP_011247465
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391154,801,613 - 54,846,966 (-)NCBI
GRCm381154,910,787 - 54,956,127 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011249164   ⟹   XP_011247466
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391154,801,613 - 54,846,938 (-)NCBI
GRCm381154,910,787 - 54,956,115 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030246196   ⟹   XP_030102056
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391154,801,613 - 54,846,937 (-)NCBI
GRCm381154,910,787 - 54,956,114 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030246197   ⟹   XP_030102057
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391154,801,613 - 54,846,966 (-)NCBI
GRCm381154,910,787 - 54,956,127 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030246199   ⟹   XP_030102059
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391154,801,613 - 54,846,953 (-)NCBI
GRCm381154,910,787 - 54,956,127 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001186204 (Get FASTA)   NCBI Sequence Viewer  
  NP_001186205 (Get FASTA)   NCBI Sequence Viewer  
  NP_001258384 (Get FASTA)   NCBI Sequence Viewer  
  NP_001258385 (Get FASTA)   NCBI Sequence Viewer  
  NP_067302 (Get FASTA)   NCBI Sequence Viewer  
  XP_006533909 (Get FASTA)   NCBI Sequence Viewer  
  XP_006533910 (Get FASTA)   NCBI Sequence Viewer  
  XP_006533911 (Get FASTA)   NCBI Sequence Viewer  
  XP_011247464 (Get FASTA)   NCBI Sequence Viewer  
  XP_011247465 (Get FASTA)   NCBI Sequence Viewer  
  XP_011247466 (Get FASTA)   NCBI Sequence Viewer  
  XP_030102056 (Get FASTA)   NCBI Sequence Viewer  
  XP_030102057 (Get FASTA)   NCBI Sequence Viewer  
  XP_030102059 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAG42155 (Get FASTA)   NCBI Sequence Viewer  
  AAH08186 (Get FASTA)   NCBI Sequence Viewer  
  AAH08665 (Get FASTA)   NCBI Sequence Viewer  
  BAD32168 (Get FASTA)   NCBI Sequence Viewer  
  BAE22494 (Get FASTA)   NCBI Sequence Viewer  
  CAB44239 (Get FASTA)   NCBI Sequence Viewer  
  CAB44240 (Get FASTA)   NCBI Sequence Viewer  
  CAC07546 (Get FASTA)   NCBI Sequence Viewer  
  CAC07547 (Get FASTA)   NCBI Sequence Viewer  
  CAD79839 (Get FASTA)   NCBI Sequence Viewer  
  CAL33748 (Get FASTA)   NCBI Sequence Viewer  
  CAL33749 (Get FASTA)   NCBI Sequence Viewer  
  EDL33510 (Get FASTA)   NCBI Sequence Viewer  
  EDL33511 (Get FASTA)   NCBI Sequence Viewer  
  EDL33512 (Get FASTA)   NCBI Sequence Viewer  
  EDL33513 (Get FASTA)   NCBI Sequence Viewer  
  EDL33514 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000018482
  ENSMUSP00000018482.7
  ENSMUSP00000099791
  ENSMUSP00000099791.3
  ENSMUSP00000099792
  ENSMUSP00000099792.2
  ENSMUSP00000104513
  ENSMUSP00000104513.2
  ENSMUSP00000104514
  ENSMUSP00000104514.2
  ENSMUSP00000104517
  ENSMUSP00000104517.4
  ENSMUSP00000116721.2
  ENSMUSP00000122836.2
GenBank Protein Q9WUU8 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_067302   ⟸   NM_021327
- Peptide Label: isoform 1
- UniProtKB: Q9WUU8 (UniProtKB/Swiss-Prot),   Q9R0X3 (UniProtKB/Swiss-Prot),   Q9EPP8 (UniProtKB/Swiss-Prot),   Q922F7 (UniProtKB/Swiss-Prot),   Q922A9 (UniProtKB/Swiss-Prot),   E9QM75 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001186205   ⟸   NM_001199276
- Peptide Label: isoform 2
- UniProtKB: Q9R0X3 (UniProtKB/Swiss-Prot),   Q9EPP8 (UniProtKB/Swiss-Prot),   Q922F7 (UniProtKB/Swiss-Prot),   Q922A9 (UniProtKB/Swiss-Prot),   Q9WUU8 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001186204   ⟸   NM_001199275
- Peptide Label: isoform 1
- UniProtKB: Q9WUU8 (UniProtKB/Swiss-Prot),   Q9R0X3 (UniProtKB/Swiss-Prot),   Q9EPP8 (UniProtKB/Swiss-Prot),   Q922F7 (UniProtKB/Swiss-Prot),   Q922A9 (UniProtKB/Swiss-Prot),   E9QM75 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001258384   ⟸   NM_001271455
- Peptide Label: isoform 2
- UniProtKB: Q9R0X3 (UniProtKB/Swiss-Prot),   Q9EPP8 (UniProtKB/Swiss-Prot),   Q922F7 (UniProtKB/Swiss-Prot),   Q922A9 (UniProtKB/Swiss-Prot),   Q9WUU8 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001258385   ⟸   NM_001271456
- Peptide Label: isoform 3
- UniProtKB: Q9WUU8 (UniProtKB/Swiss-Prot),   Q9R0X3 (UniProtKB/Swiss-Prot),   Q9EPP8 (UniProtKB/Swiss-Prot),   Q922F7 (UniProtKB/Swiss-Prot),   Q922A9 (UniProtKB/Swiss-Prot),   D3Z2W0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006533911   ⟸   XM_006533848
- Peptide Label: isoform X5
- UniProtKB: Q9WUU8 (UniProtKB/Swiss-Prot),   Q9R0X3 (UniProtKB/Swiss-Prot),   Q9EPP8 (UniProtKB/Swiss-Prot),   Q922F7 (UniProtKB/Swiss-Prot),   Q922A9 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006533909   ⟸   XM_006533846
- Peptide Label: isoform X1
- UniProtKB: Q9WUU8 (UniProtKB/Swiss-Prot),   Q9R0X3 (UniProtKB/Swiss-Prot),   Q9EPP8 (UniProtKB/Swiss-Prot),   Q922F7 (UniProtKB/Swiss-Prot),   Q922A9 (UniProtKB/Swiss-Prot),   E9QM75 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006533910   ⟸   XM_006533847
- Peptide Label: isoform X3
- UniProtKB: Q9R0X3 (UniProtKB/Swiss-Prot),   Q9EPP8 (UniProtKB/Swiss-Prot),   Q922F7 (UniProtKB/Swiss-Prot),   Q922A9 (UniProtKB/Swiss-Prot),   Q9WUU8 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_011247464   ⟸   XM_011249162
- Peptide Label: isoform X2
- UniProtKB: Q9WUU8 (UniProtKB/Swiss-Prot),   Q9R0X3 (UniProtKB/Swiss-Prot),   Q9EPP8 (UniProtKB/Swiss-Prot),   Q922F7 (UniProtKB/Swiss-Prot),   Q922A9 (UniProtKB/Swiss-Prot),   D3Z2W0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011247465   ⟸   XM_011249163
- Peptide Label: isoform X3
- UniProtKB: Q9R0X3 (UniProtKB/Swiss-Prot),   Q9EPP8 (UniProtKB/Swiss-Prot),   Q922F7 (UniProtKB/Swiss-Prot),   Q922A9 (UniProtKB/Swiss-Prot),   Q9WUU8 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_011247466   ⟸   XM_011249164
- Peptide Label: isoform X5
- UniProtKB: Q9WUU8 (UniProtKB/Swiss-Prot),   Q9R0X3 (UniProtKB/Swiss-Prot),   Q9EPP8 (UniProtKB/Swiss-Prot),   Q922F7 (UniProtKB/Swiss-Prot),   Q922A9 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_030102059   ⟸   XM_030246199
- Peptide Label: isoform X6
- UniProtKB: Q9WUU8 (UniProtKB/Swiss-Prot),   Q9R0X3 (UniProtKB/Swiss-Prot),   Q9EPP8 (UniProtKB/Swiss-Prot),   Q922F7 (UniProtKB/Swiss-Prot),   Q922A9 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_030102057   ⟸   XM_030246197
- Peptide Label: isoform X4
- UniProtKB: Q9WUU8 (UniProtKB/Swiss-Prot),   Q9R0X3 (UniProtKB/Swiss-Prot),   Q9EPP8 (UniProtKB/Swiss-Prot),   Q922F7 (UniProtKB/Swiss-Prot),   Q922A9 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_030102056   ⟸   XM_030246196
- Peptide Label: isoform X2
- UniProtKB: Q9WUU8 (UniProtKB/Swiss-Prot),   Q9R0X3 (UniProtKB/Swiss-Prot),   Q9EPP8 (UniProtKB/Swiss-Prot),   Q922F7 (UniProtKB/Swiss-Prot),   Q922A9 (UniProtKB/Swiss-Prot),   D3Z2W0 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSMUSP00000122836   ⟸   ENSMUST00000126703
Ensembl Acc Id: ENSMUSP00000104514   ⟸   ENSMUST00000108886
Ensembl Acc Id: ENSMUSP00000104513   ⟸   ENSMUST00000108885
Ensembl Acc Id: ENSMUSP00000104517   ⟸   ENSMUST00000108889
Ensembl Acc Id: ENSMUSP00000099792   ⟸   ENSMUST00000102731
Ensembl Acc Id: ENSMUSP00000099791   ⟸   ENSMUST00000102730
Ensembl Acc Id: ENSMUSP00000116721   ⟸   ENSMUST00000155316
Ensembl Acc Id: ENSMUSP00000018482   ⟸   ENSMUST00000018482
Protein Domains
NF-kappa-B essential modulator NEMO CC2-LZ

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9WUU8-F1-model_v2 AlphaFold Q9WUU8 1-647 view protein structure

Promoters
RGD ID:6822360
Promoter ID:MM_KWN:7465
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Spleen
Transcripts:OTTMUST00000040370
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361154,734,091 - 54,735,252 (-)MPROMDB
RGD ID:6822353
Promoter ID:MM_KWN:7466
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_2Hour,   BoneMarrow_4Hour
Transcripts:ENSMUST00000093101
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361154,753,579 - 54,754,079 (-)MPROMDB
RGD ID:6822357
Promoter ID:MM_KWN:7468
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day3,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000101203,   OTTMUST00000014394,   OTTMUST00000014395,   OTTMUST00000014396,   OTTMUST00000040368,   UC007IYL.1,   UC007IYQ.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361154,769,306 - 54,770,607 (-)MPROMDB
RGD ID:6822358
Promoter ID:MM_KWN:7469
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   ES_Cell,   Spleen
Transcripts:ENSMUST00000102731,   ENSMUST00000108886,   NM_021327,   OTTMUST00000040369,   UC007IYO.1,   UC007IYP.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361154,776,266 - 54,776,766 (-)MPROMDB
RGD ID:8674678
Promoter ID:EPDNEW_M15370
Type:initiation region
Name:Tnip1_1
Description:Mus musculus TNFAIP3 interacting protein 1 , transcript variant3, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M15371  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381154,956,083 - 54,956,143EPDNEW
RGD ID:8674680
Promoter ID:EPDNEW_M15371
Type:initiation region
Name:Tnip1_2
Description:Mus musculus TNFAIP3 interacting protein 1 , transcript variant3, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M15370  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381154,962,938 - 54,962,998EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1926194 AgrOrtholog
Ensembl Genes ENSMUSG00000020400 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000018482 ENTREZGENE
  ENSMUST00000018482.13 UniProtKB/TrEMBL
  ENSMUST00000102730 ENTREZGENE
  ENSMUST00000102730.9 UniProtKB/TrEMBL
  ENSMUST00000102731 ENTREZGENE
  ENSMUST00000102731.8 UniProtKB/TrEMBL
  ENSMUST00000108885 ENTREZGENE
  ENSMUST00000108885.8 UniProtKB/Swiss-Prot
  ENSMUST00000108886 ENTREZGENE
  ENSMUST00000108886.8 UniProtKB/Swiss-Prot
  ENSMUST00000108889 ENTREZGENE
  ENSMUST00000108889.10 UniProtKB/TrEMBL
  ENSMUST00000126703.8 UniProtKB/TrEMBL
  ENSMUST00000155316.2 UniProtKB/TrEMBL
Gene3D-CATH Nemo cc2-lz domain - 1d5 darpin complex UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro CC2-LZ_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:57783 UniProtKB/Swiss-Prot
MGD MGI:1926194 ENTREZGENE
NCBI Gene 57783 ENTREZGENE
PANTHER PTHR31882:SF3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TNFAIP3-INTERACTING PROTEIN COILED COIL FAMILY MEMBER UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam CC2-LZ UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Tnip1 PhenoGen
UniProt D3Z2W0 ENTREZGENE, UniProtKB/TrEMBL
  D3Z3B6_MOUSE UniProtKB/TrEMBL
  D3Z410_MOUSE UniProtKB/TrEMBL
  E9QM75 ENTREZGENE, UniProtKB/TrEMBL
  Q3UXR9_MOUSE UniProtKB/TrEMBL
  Q6A0C8_MOUSE UniProtKB/TrEMBL
  Q922A9 ENTREZGENE
  Q922F7 ENTREZGENE
  Q9EPP8 ENTREZGENE
  Q9R0X3 ENTREZGENE
  Q9WUU8 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary Q922A9 UniProtKB/Swiss-Prot
  Q922F7 UniProtKB/Swiss-Prot
  Q9EPP8 UniProtKB/Swiss-Prot
  Q9R0X3 UniProtKB/Swiss-Prot