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Gene: Mrps36 (mitochondrial ribosomal protein S36) Mus musculus

Analyze

Symbol:

Mrps36

Name:

mitochondrial ribosomal protein S36

RGD ID:

1319597

MGI Page

MGI

Description:

Enables protein-macromolecule adaptor activity. Involved in 2-oxoglutarate metabolic process and tricarboxylic acid cycle. Located in mitochondrion. Part of oxoglutarate dehydrogenase complex. Is expressed in several structures, including early conceptus; gonad; heart; liver; and metanephros. Orthologous to human KGD4 (alpha-ketoglutarate dehydrogenase subunit 4).

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

1110018B13Rik; 28S ribosomal protein S36, mitochondrial; alpha-ketoglutarate dehydrogenase component 4; alpha-ketoglutarate dehydrogenase subunit 4; Kgd4; S36mt

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Related Pseudogenes:

Gm11689 Gm13687 Gm16149 Gm16260 Gm19252 Gm19253 Gm19254 Gm2352 Gm3544 Gm7258 Mrps36-ps1 Mrps36-ps2 Mrps36-ps3

Latest Assembly:

GRCm39 - Mouse Genome Assembly GRCm39

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	13	100,872,448 - 100,881,167 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	13	100,872,463 - 100,881,167 (-)	Ensembl		GRCm39 Ensembl
GRCm38	13	100,735,940 - 100,744,659 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	13	100,735,955 - 100,744,659 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	13	101,505,895 - 101,514,614 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	13	101,836,218 - 101,844,892 (-)	NCBI		MGSCv36	mm8
Celera	13	104,345,739 - 104,353,541 (-)	NCBI		Celera
Cytogenetic Map	13	D1	NCBI
cM Map	13	53.23	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Neurodevelopmental Disorders (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(1->4)-beta-D-glucan (EXP)

1,2-dichloroethane (EXP)

1,2-dimethylhydrazine (EXP)

17alpha-ethynylestradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

2-hydroxypropanoic acid (ISO)

3-chloropropane-1,2-diol (ISO)

4,4'-diaminodiphenylmethane (EXP)

benzo[a]pyrene (EXP,ISO)

bisphenol A (ISO)

Brodifacoum (ISO)

cadmium dichloride (ISO)

caffeine (ISO)

carbon nanotube (EXP)

cefaloridine (ISO)

cisplatin (ISO)

copper(II) sulfate (ISO)

dibutyl phthalate (EXP,ISO)

dicrotophos (ISO)

disodium selenite (ISO)

finasteride (ISO)

folic acid (EXP)

FR900359 (ISO)

ivermectin (ISO)

lipopolysaccharide (ISO)

N,N-diethyl-m-toluamide (ISO)

oxaliplatin (ISO)

ozone (EXP)

paracetamol (EXP,ISO)

perfluorooctane-1-sulfonic acid (EXP)

perfluorooctanoic acid (ISO)

permethrin (ISO)

pirinixic acid (EXP)

potassium chromate (ISO)

rac-lactic acid (ISO)

sodium fluoride (EXP)

sunitinib (ISO)

titanium dioxide (EXP)

tolcapone (ISO)

topotecan (ISO)

triphenyl phosphate (ISO)

triptonide (EXP)

tungsten (EXP)

zinc atom (ISO)

zinc(0) (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

2-oxoglutarate metabolic process (IBA,IMP)

tricarboxylic acid cycle (IMP)

Cellular Component

mitochondrion (HDA,IDA,ISO)

oxoglutarate dehydrogenase complex (IBA,IDA,IMP)

Molecular Function

protein-macromolecule adaptor activity (IDA)

Phenotype Annotations Click to see Annotation Detail View

Mammalian Phenotype

abnormal bone structure (IEA)

abnormal eye posterior chamber depth (IEA)

abnormal retina inner nuclear layer morphology (IEA)

decreased lean body mass (IEA)

increased bone mineral content (IEA)

increased total body fat amount (IEA)

microphthalmia (IEA)

preweaning lethality, complete penetrance (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Electronic Transfer of Homolog Data	MGD and Homologene mouse data transfer
2.	MGDs mouse GO annotations	MGD data from the GO Consortium
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:8889548	PMID:10349636	PMID:10922068	PMID:11042159	PMID:11076861	PMID:11125038	PMID:11217851	PMID:12466851	PMID:12477932	PMID:14610273	PMID:14651853	PMID:15489334
PMID:16141072	PMID:16141073	PMID:18614015	PMID:21873635	PMID:25165143	PMID:29222160	PMID:30457570	PMID:32325033	PMID:32987154	PMID:36854377	PMID:38355793

Genomics

Comparative Map Data

Mrps36
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	13	100,872,448 - 100,881,167 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	13	100,872,463 - 100,881,167 (-)	Ensembl		GRCm39 Ensembl
GRCm38	13	100,735,940 - 100,744,659 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	13	100,735,955 - 100,744,659 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	13	101,505,895 - 101,514,614 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	13	101,836,218 - 101,844,892 (-)	NCBI		MGSCv36	mm8
Celera	13	104,345,739 - 104,353,541 (-)	NCBI		Celera
Cytogenetic Map	13	D1	NCBI
cM Map	13	53.23	NCBI

KGD4
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	5	69,217,760 - 69,230,158 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	5	69,217,760 - 69,230,158 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	5	68,513,587 - 68,525,985 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	5	68,549,329 - 68,561,741 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	5	68,549,342 - 68,561,739	NCBI
Celera	5	65,512,825 - 65,528,390 (+)	NCBI		Celera
Cytogenetic Map	5	q13.2	NCBI
HuRef	5	65,469,537 - 65,482,195 (+)	NCBI		HuRef
CHM1_1	5	68,513,313 - 68,525,725 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	5	70,040,372 - 70,055,914 (+)	NCBI		T2T-CHM13v2.0

Kgd4
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	2	33,604,611 - 33,614,988 (-)	NCBI		GRCr8
mRatBN7.2	2	31,870,549 - 31,878,335 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	2	31,870,551 - 31,880,730 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	2	39,004,585 - 39,012,399 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	2	37,045,627 - 37,053,481 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	2	31,903,759 - 31,911,592 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	2	30,740,620 - 30,750,916 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	2	30,739,855 - 30,748,428 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	2	49,899,207 - 49,909,508 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	2	31,530,724 - 31,538,504 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	2	31,451,100 - 31,490,839 (-)	NCBI
Celera	2	27,884,219 - 27,892,495 (-)	NCBI		Celera
Cytogenetic Map	2	q12	NCBI

Kgd4
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955446	38,161 - 50,167 (+)	NCBI	ChiLan1.0	ChiLan1.0

KGD4
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	4	44,689,561 - 44,705,131 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	5	42,843,883 - 42,858,731 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	5	44,770,401 - 44,785,945 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	5	46,339,397 - 46,345,053 (-)	NCBI	panpan1.1	PanPan1.1	panPan2

KGD4
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	2	54,302,992 - 54,311,943 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	5	25,834,145 - 25,834,559 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	2	51,269,353 - 51,278,289 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	2	54,813,730 - 54,822,456 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	2	54,813,822 - 54,822,531 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	2	51,872,745 - 51,880,816 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	2	52,648,030 - 52,656,767 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	2	53,535,638 - 53,544,376 (+)	NCBI		UU_Cfam_GSD_1.0

Kgd4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024407213	191,408,431 - 191,417,382 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936480	344,670 - 353,871 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936480	345,332 - 353,828 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

KGD4
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	16	47,386,323 - 47,405,904 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	16	47,386,412 - 47,405,342 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	16	51,279,820 - 51,298,746 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

KGD4
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	4	65,311,461 - 65,324,129 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666049	14,042,577 - 14,055,073 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Kgd4
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624905	105,155 - 118,607 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Mrps36
248 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	935
Count of miRNA genes:	382
Interacting mature miRNAs:	424
Transcripts:	ENSMUST00000076037, ENSMUST00000078573, ENSMUST00000109333, ENSMUST00000125206, ENSMUST00000132955, ENSMUST00000150113
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCm39)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1558741	Ses10_m	salmonella enteritidis susceptibility 10 (mouse)			Not determined		13	82739968	116740106	Mouse
10043997	Bw40_m	body weight QTL 40 (mouse)			Not determined		14	79239045	113239162	Mouse
1301142	Heal2_m	wound healing/regeneration 2 (mouse)			Not determined		13	93875267	120883175	Mouse
1357468	Rplag_m	reduced platelet aggregation (mouse)			Not determined		13	95502130	120883175	Mouse
1301593	Heal8_m	wound healing/regeneration 8 (mouse)			Not determined		13	68053999	102054119	Mouse
12879496	Fexq2_m	fear expression QTL 2 (mouse)					13	100741519	120883175	Mouse
4141102	Sod1m_m	superoxide dismutase 1, soluble, modifier (mouse)			Not determined			99739968	110699911	Mouse
4142314	Tailaq3_m	tail length adjusted QTL 3 (mouse)			Not determined			55720354	112431103	Mouse
4141992	W6q16_m	weight 6 weeks QTL 16 (mouse)			Not determined			55720354	112431103	Mouse
1300939	Hrtfm6_m	heart failure modifier 6 (mouse)			Not determined		13	91383692	120883175	Mouse
12880414	V125Dq10_m	vitamin D active form serum level QTL 10 (mouse)					13	78036508	112036508	Mouse
4142241	Tailq3_m	tail length QTL 3 (mouse)			Not determined			55720354	112431103	Mouse
14747007	Mancz11_m	mandible centroid size 11 (mouse)					13	70111284	104111284	Mouse
4141728	Egaq4_m	early growth adjusted QTL 4 (mouse)			Not determined			87901985	112431103	Mouse
1300876	Tanidd2_m	tally ho associated non-insulin dependednt diabetes mellitus 2 (mouse)			Not determined		13	91965303	120883175	Mouse
4140959	W10q17_m	weight 10 weeks QTL 17 (mouse)			Not determined			55720354	112431103	Mouse
4141266	Mol3_m	modifier of LPS-response 3 (mouse)			Not determined			76132600	112431103	Mouse
10045623	Heal18_m	wound healing regeneration 18 (mouse)			Not determined		13	79239045	113239162	Mouse
10402414	Sgp5_m	serum gp70 production 5 (mouse)			Not determined		13	56470456	105422186	Mouse
14700691	Cisaq1_m	coxsackieviral infection serum ALT QTL 1 (mouse)					13	86148119	120461536	Mouse
14696726	Kidrq3_m	kidney weight, right QTL 3 (mouse)					13	68217066	102217066	Mouse
4142147	Mvwf4_m	modifier of von Willebrand factor 4 (mouse)			Not determined			20477612	112898424	Mouse
4140995	Fbtq6_m	femoral bone trait QTL 6 (mouse)			Not determined		13	86341617	120341758	Mouse
1558763	Gct9_m	granulosa cell tumorigenesis 9 (mouse)			Not determined		13	95036824	120883175	Mouse
4142338	Skmw18_m	skeletal muscle weight 18 (mouse)			Not determined		13	94528399	120883175	Mouse
4142465	Pbwg17_m	postnatal body weight growth 17 (mouse)			Not determined		13	83876060	117876256	Mouse
14746974	Manh75_m	mandible shape 75 (mouse)					13	99386647	120883175	Mouse

Markers in Region

D13Mit195

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	13	100,739,552 - 100,739,748	UniSTS	GRCm38
MGSCv37	13	101,509,507 - 101,509,703	UniSTS	GRCm37
Celera	13	104,348,434 - 104,348,630	UniSTS
Cytogenetic Map	13	D1	UniSTS
cM Map	13	51.0	UniSTS
Whitehead Genetic	13	38.3	UniSTS
Whitehead_YAC	13		UniSTS

UniSTS:488726

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	1	9,901,944 - 9,902,535	UniSTS	GRCm38
MGSCv37	1	9,892,025 - 9,892,616	UniSTS	GRCm37
Celera	1	9,874,767 - 9,875,358	UniSTS
Cytogenetic Map	13	D1	UniSTS
Cytogenetic Map	1	A2	UniSTS
cM Map	1	7.5	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001190264	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_025369	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC165159	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK003111	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK003765	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK007512	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK009050	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK009966	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC028499	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC096576	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH466567	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSMUST00000076037

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	13	100,872,660 - 100,881,096 (-)	Ensembl
GRCm38.p6 Ensembl	13	100,736,152 - 100,744,588 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000078573 ⟹ ENSMUSP00000104954

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	13	100,872,585 - 100,881,165 (-)	Ensembl
GRCm38.p6 Ensembl	13	100,736,077 - 100,744,657 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000109333 ⟹ ENSMUSP00000104957

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	13	100,872,463 - 100,881,167 (-)	Ensembl
GRCm38.p6 Ensembl	13	100,735,955 - 100,744,659 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000125206

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	13	100,872,688 - 100,880,622 (-)	Ensembl
GRCm38.p6 Ensembl	13	100,736,180 - 100,744,114 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000132955

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	13	100,872,637 - 100,880,639 (-)	Ensembl
GRCm38.p6 Ensembl	13	100,736,129 - 100,744,131 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000150113

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	13	100,879,916 - 100,880,621 (-)	Ensembl
GRCm38.p6 Ensembl	13	100,743,408 - 100,744,113 (-)	Ensembl

RefSeq Acc Id:

NM_001190264 ⟹ NP_001177193

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	13	100,872,448 - 100,881,167 (-)	NCBI
GRCm38	13	100,735,940 - 100,744,659 (-)	ENTREZGENE
MGSCv37	13	101,505,895 - 101,514,614 (-)	RGD
Celera	13	104,345,739 - 104,353,541 (-)	RGD
cM Map	13		ENTREZGENE

Sequence:

show sequence

GACATCACACAGGCTCCGCCCCACGCTGCCCACTCCAGATACTTCTGCAGCTCGTCTGCGCCCC
GGAAGCTGCCCCTGCTCGGGGGTCACGATGGGCAGCAAGATGGCTTCCGCCACCAGGGTCGTGC
AGGTAGTGAAGCCACACGCTCCATTAATAAAGTTCCCTAACAGAAGAGACAAACCTAAACTCAG
TGAAGCTTTGGGGTCTGCAGCGCTCCCCTCCCACTCCTCTGCAATTTCACAGCATTCTAAAGGA
AGTACGTCCCCCGATTTACTGATGCACCAGGGGCCACCAGACACTGCAGAAATTATAAAATCAT
TACCTCAGAAATACAGAAGGAAACCTATGTCTCAAGAGGAAATGGAATTTATCCAGCGTGGGGG
TCCAGAGTGACCGTCGTGGCTGCTGCTTGTCACCAGACAGAAGGGTTAGCTTTACAATAAAGGA
CTTCCACAATGTCAAATGAAAAGTCATATATTAAACAACCTTAATAAATATTCTGTGAGCAGAA
TGAAGTACAGAAACTCCAGGTGGTCACTTGTATCTCCTACACTGTGTATCTCGGTCAGCTGCCC
CACAAGCTGCCCTGTACACTTATTAAAGTCTACATTTTTAAATGCTAGCCTATTAACTTGCTCT
TGATTATGAAATGTTCCCAGCGATGAGCTATTAAAAGCACATAGTATCTAATAAATGTCCCTTT
TCTGTT

hide sequence

RefSeq Acc Id:

NM_025369 ⟹ NP_079645

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	13	100,872,448 - 100,881,167 (-)	NCBI
GRCm38	13	100,735,940 - 100,744,659 (-)	ENTREZGENE
MGSCv37	13	101,505,895 - 101,514,614 (-)	RGD
Celera	13	104,345,739 - 104,353,541 (-)	RGD
cM Map	13		ENTREZGENE

Sequence:

show sequence

GACATCACACAGGCTCCGCCCCACGCTGCCCACTCCAGATACTTCTGCAGCTCGTCTGCGCCCC
GGAAGCTGCCCCTGCTCGGGGGTCACGATGGGCAGCAAGATGGCTTCCGCCACCAGGGTCGTGC
AGGTAGTGAAGCCACACGCTCCATTAATAAAGTTCCCTAACAGAAGAGACAAACCTAAACTCAG
TGCCTCAGAAGCTTTGGGGTCTGCAGCGCTCCCCTCCCACTCCTCTGCAATTTCACAGCATTCT
AAAGGAAGTACGTCCCCCGATTTACTGATGCACCAGGGGCCACCAGACACTGCAGAAATTATAA
AATCATTACCTCAGAAATACAGAAGGAAACCTATGTCTCAAGAGGAAATGGAATTTATCCAGCG
TGGGGGTCCAGAGTGACCGTCGTGGCTGCTGCTTGTCACCAGACAGAAGGGTTAGCTTTACAAT
AAAGGACTTCCACAATGTCAAATGAAAAGTCATATATTAAACAACCTTAATAAATATTCTGTGA
GCAGAATGAAGTACAGAAACTCCAGGTGGTCACTTGTATCTCCTACACTGTGTATCTCGGTCAG
CTGCCCCACAAGCTGCCCTGTACACTTATTAAAGTCTACATTTTTAAATGCTAGCCTATTAACT
TGCTCTTGATTATGAAATGTTCCCAGCGATGAGCTATTAAAAGCACATAGTATCTAATAAATGT
CCCTTTTCTGTT

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Protein Sequences


Protein RefSeqs	NP_001177193	(Get FASTA)	NCBI Sequence Viewer
	NP_079645	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH28499	(Get FASTA)	NCBI Sequence Viewer
	AAH96576	(Get FASTA)	NCBI Sequence Viewer
	BAB22573	(Get FASTA)	NCBI Sequence Viewer
	BAB22983	(Get FASTA)	NCBI Sequence Viewer
	BAB25081	(Get FASTA)	NCBI Sequence Viewer
	BAB26047	(Get FASTA)	NCBI Sequence Viewer
	BAB26616	(Get FASTA)	NCBI Sequence Viewer
	EDL00791	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSMUSP00000104954
	ENSMUSP00000104954.2
	ENSMUSP00000104957
	ENSMUSP00000104957.2
GenBank Protein	Q9CQX8	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	NP_079645 ⟸ NM_025369
- Peptide Label:	isoform 1
- UniProtKB:	Q4VA25 (UniProtKB/Swiss-Prot), Q9CQX8 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MGSKMASATRVVQVVKPHAPLIKFPNRRDKPKLSASEALGSAALPSHSSAISQHSKGSTSPDLL MHQGPPDTAEIIKSLPQKYRRKPMSQEEMEFIQRGGPE hide sequence

RefSeq Acc Id:	NP_001177193 ⟸ NM_001190264
- Peptide Label:	isoform 2
- UniProtKB:	Q9D6T9 (UniProtKB/TrEMBL)
- Sequence:	show sequence MGSKMASATRVVQVVKPHAPLIKFPNRRDKPKLSEALGSAALPSHSSAISQHSKGSTSPDLLMH QGPPDTAEIIKSLPQKYRRKPMSQEEMEFIQRGGPE hide sequence

Ensembl Acc Id:

ENSMUSP00000104957 ⟸ ENSMUST00000109333

Ensembl Acc Id:

ENSMUSP00000104954 ⟸ ENSMUST00000078573

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q9CQX8-F1-model_v2	AlphaFold	Q9CQX8	1-102	view protein structure

Promoters

RGD ID:

8681186

Promoter ID:

EPDNEW_M18624

Type:

initiation region

Name:

Mrps36_1

Description:

Mus musculus mitochondrial ribosomal protein S36 , transcriptvariant 2, mRNA.

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	13	100,744,619 - 100,744,679	EPDNEW

RGD ID:

6824162

Promoter ID:

MM_KWN:15092

Type:

CpG-Island

SO ACC ID:

SO:0000170

Source:

MPROMDB

Tissues & Cell Lines:

3T3L1_Day0, 3T3L1_Day1, 3T3L1_Day2, 3T3L1_Day3, 3T3L1_Day4, 3T3L1_Day6, BoneMarrow_0Hour, BoneMarrow_2Hour, BoneMarrow_4Hour, Brain, ES_Cell, Kidney, Liver, Lung, MEF_B4, MEF_B6, Spleen

Transcripts:

ENSMUST00000109333, OTTMUST00000055015, OTTMUST00000055016, OTTMUST00000055017, OTTMUST00000055018, UC007RRM.1

Position:

Mouse Assembly	Chr	Position (strand)	Source
MGSCv36	13	101,513,951 - 101,514,787 (-)	MPROMDB

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	MGI:1913378	AgrOrtholog
Ensembl Genes	ENSMUSG00000061474	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript	ENSMUST00000078573	ENTREZGENE
	ENSMUST00000078573.5	UniProtKB/TrEMBL
	ENSMUST00000109333	ENTREZGENE
	ENSMUST00000109333.8	UniProtKB/Swiss-Prot
InterPro	Ribosomal_S36_mt	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	mmu:66128	UniProtKB/Swiss-Prot
MGD	MGI:1913378	ENTREZGENE
NCBI Gene	66128	ENTREZGENE
PANTHER	28S RIBOSOMAL PROTEIN S36, MITOCHONDRIAL	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	PTHR31601	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	S36_mt	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Mrps36	PhenoGen
UniProt	Q4VA25	ENTREZGENE
	Q9CQX8	ENTREZGENE
	Q9D6T9	ENTREZGENE, UniProtKB/TrEMBL
	RT36_MOUSE	UniProtKB/Swiss-Prot
UniProt Secondary	Q4VA25	UniProtKB/Swiss-Prot

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar

Mammalian Phenotype