Cert1 (ceramide transporter 1) - Rat Genome Database

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Gene: Cert1 (ceramide transporter 1) Mus musculus
Analyze
Symbol: Cert1
Name: ceramide transporter 1
RGD ID: 1319301
MGI Page MGI
Description: Enables kinase activity. Involved in ER to Golgi ceramide transport. Acts upstream of or within several processes, including ceramide metabolic process; in utero embryonic development; and lipid homeostasis. Located in cytosol and mitochondrion. Is expressed in several structures, including alimentary system; eye; nervous system; respiratory system; and urinary system. Human ortholog(s) of this gene implicated in autosomal dominant intellectual developmental disorder 34. Orthologous to human CERT1 (ceramide transporter 1).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 2810404O15Rik; 9230101K08Rik; AU016711; Cer; ceramide transfer protein; ceramide transport protein; CERT; Col4; Col4a3bp; collagen type IV alpha-3-binding protein; goodpasture antigen-binding protein; GP; GPBP; procollagen, type IV, alpha 3 (Goodpasture antigen) binding protein; stAR-related lipid transfer protein 11; stARD11; START domain-containing protein 11
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391396,679,243 - 96,782,362 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1396,679,243 - 96,776,675 (+)EnsemblGRCm39 Ensembl
GRCm381396,542,709 - 96,640,167 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1396,542,618 - 96,640,167 (+)EnsemblGRCm38mm10GRCm38
MGSCv371397,312,690 - 97,410,122 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361397,643,445 - 97,738,249 (+)NCBIMGSCv36mm8
Celera13100,179,310 - 100,279,400 (+)NCBICelera
Cytogenetic Map13D1NCBI
cM Map1350.58NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dimethylhydrazine  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,6-dinitrotoluene  (ISO)
2-methylcholine  (ISO)
3,4-methylenedioxymethamphetamine  (EXP)
4,4'-diaminodiphenylmethane  (EXP)
4,4'-sulfonyldiphenol  (ISO)
6-propyl-2-thiouracil  (ISO)
aflatoxin B1  (EXP,ISO)
aldehydo-D-glucose  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
benzo[a]pyrene  (EXP,ISO)
benzo[a]pyrene diol epoxide I  (ISO)
bis(2-ethylhexyl) phthalate  (EXP)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
bleomycin A2  (EXP)
butanal  (ISO)
cadmium dichloride  (ISO)
caffeine  (ISO)
cisplatin  (ISO)
copper(II) sulfate  (ISO)
crocidolite asbestos  (ISO)
cyclosporin A  (ISO)
D-glucose  (ISO)
Dibutyl phosphate  (ISO)
doxorubicin  (ISO)
elemental selenium  (ISO)
endosulfan  (ISO)
ethanol  (EXP)
fipronil  (ISO)
folic acid  (EXP)
formaldehyde  (ISO)
FR900359  (ISO)
gefitinib  (ISO)
gentamycin  (ISO)
glucose  (ISO)
high-density lipoprotein cholesterol  (EXP)
indole-3-methanol  (ISO)
ivermectin  (ISO)
lead(0)  (ISO)
methamphetamine  (ISO)
methimazole  (ISO)
N,N-diethyl-m-toluamide  (ISO)
nicotinic acid  (EXP)
nitrates  (EXP)
oxaliplatin  (ISO)
paracetamol  (EXP,ISO)
pentachlorophenol  (EXP)
permethrin  (ISO)
phenobarbital  (EXP)
pirinixic acid  (EXP)
potassium dichromate  (ISO)
resveratrol  (ISO)
Salidroside  (ISO)
selenium atom  (ISO)
sodium arsenate  (EXP)
sodium arsenite  (ISO)
sulfadimethoxine  (ISO)
sunitinib  (ISO)
titanium dioxide  (EXP)
topotecan  (ISO)
trichloroethene  (ISO)
valproic acid  (ISO)
vitamin E  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
abnormal cardiac outflow tract development  (IAGP)
abnormal cardiovascular system physiology  (IAGP)
abnormal cell physiology  (IAGP)
abnormal cervical rib  (IEA)
abnormal endoplasmic reticulum morphology  (IAGP)
abnormal forebrain morphology  (IEA)
abnormal heart morphology  (IAGP)
abnormal lipid homeostasis  (IAGP)
abnormal mitochondrial morphology  (IAGP)
abnormal mitochondrial physiology  (IAGP)
abnormal muscle development  (IAGP)
abnormal nasal cavity morphology  (IEA)
abnormal optic cup morphology  (IEA)
abnormal pectinate muscle morphology  (IEA)
abnormal placenta morphology  (IAGP)
abnormal placental labyrinth vasculature morphology  (IAGP)
abnormal semicircular canal morphology  (IEA)
abnormal trophoblast layer morphology  (IAGP)
abnormal umbilical vein topology  (IEA)
abnormal vertebral arch morphology  (IEA)
abnormal vertebral artery topology  (IEA)
absent tibia  (IEA)
aphakia  (IEA)
decreased cell proliferation  (IAGP)
decreased cervical vertebrae number  (IEA)
decreased embryo size  (IAGP)
decreased heart ventricle muscle contractility  (IAGP)
decreased mean corpuscular hemoglobin  (IEA)
double outlet right ventricle  (IEA)
embryonic lethality during organogenesis, complete penetrance  (IAGP)
fetal growth retardation  (IEA)
fusion of vertebral arches  (IEA)
fusion of vertebral bodies  (IEA)
heterochrony  (IEA)
increased cardiac jelly amount  (IAGP)
increased heart ventricle size  (IAGP)
muscular ventricular septal defect  (IEA)
perimembraneous ventricular septal defect  (IEA)
persistent right dorsal aorta  (IEA)
persistent trigeminal artery  (IEA)
persistent truncus arteriosus  (IEA)
placenta hemorrhage  (IAGP)
placenta necrosis  (IAGP)
preweaning lethality, incomplete penetrance  (IAGP)
small placenta  (IAGP)
thin ventricular wall  (IAGP)
References

References - curated
# Reference Title Reference Citation
1. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2. Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Ko MS, etal., Development 2000 Apr;127(8):1737-49.
3. MGDs mouse GO annotations MGD data from the GO Consortium
4. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
5. Mouse MP Annotation Import Pipeline RGD automated import pipeline
6. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
8. Fetal asphyxia induces acute and persisting changes in the ceramide metabolism in rat brain. Vlassaks E, etal., J Lipid Res. 2013 Jul;54(7):1825-33. doi: 10.1194/jlr.M034447. Epub 2013 Apr 26.
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10922068   PMID:11007769   PMID:11042159   PMID:11076861   PMID:12477932   PMID:12520002   PMID:14610273   PMID:14681479   PMID:14685229   PMID:15489334  
PMID:15504975   PMID:16141072   PMID:16141073   PMID:16537572   PMID:17916599   PMID:18165232   PMID:18411267   PMID:18799693   PMID:19139267   PMID:21267068   PMID:21677750   PMID:21832087  
PMID:21873635   PMID:23246342   PMID:23818862   PMID:24642596   PMID:27619726   PMID:27996060   PMID:28185240   PMID:28378742   PMID:29539633   PMID:29759974   PMID:30139741   PMID:30973865  
PMID:32325033   PMID:32554809   PMID:33580754   PMID:34622152   PMID:38355793  


Genomics

Comparative Map Data
Cert1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391396,679,243 - 96,782,362 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1396,679,243 - 96,776,675 (+)EnsemblGRCm39 Ensembl
GRCm381396,542,709 - 96,640,167 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1396,542,618 - 96,640,167 (+)EnsemblGRCm38mm10GRCm38
MGSCv371397,312,690 - 97,410,122 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361397,643,445 - 97,738,249 (+)NCBIMGSCv36mm8
Celera13100,179,310 - 100,279,400 (+)NCBICelera
Cytogenetic Map13D1NCBI
cM Map1350.58NCBI
CERT1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38575,368,486 - 75,511,981 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl575,356,345 - 75,512,138 (-)EnsemblGRCh38hg38GRCh38
GRCh37574,664,311 - 74,807,806 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36574,710,821 - 74,843,196 (-)NCBINCBI36Build 36hg18NCBI36
Build 34574,710,820 - 74,843,196NCBI
Celera570,560,104 - 70,701,203 (-)NCBICelera
Cytogenetic Map5q13.3NCBI
HuRef569,872,100 - 70,012,981 (-)NCBIHuRef
CHM1_1574,099,650 - 74,240,532 (-)NCBICHM1_1
T2T-CHM13v2.0575,849,379 - 75,993,050 (-)NCBIT2T-CHM13v2.0
Cert1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8229,617,202 - 29,721,734 (+)NCBIGRCr8
mRatBN7.2227,882,546 - 27,987,090 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl227,882,555 - 27,987,074 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx234,930,260 - 35,034,747 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0233,030,339 - 33,134,827 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0227,844,444 - 27,949,018 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0227,365,145 - 27,469,797 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl227,365,148 - 27,469,779 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0246,477,805 - 46,582,454 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4227,012,330 - 27,117,057 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1226,932,579 - 27,035,278 (+)NCBI
Celera223,928,949 - 24,033,427 (+)NCBICelera
Cytogenetic Map2q12NCBI
Cert1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542525,233,556 - 25,357,802 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542525,228,216 - 25,355,597 (+)NCBIChiLan1.0ChiLan1.0
CERT1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2439,789,812 - 39,928,826 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1537,943,448 - 38,082,459 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0539,788,858 - 39,927,626 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1540,400,615 - 40,539,921 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl540,400,900 - 40,539,921 (+)Ensemblpanpan1.1panPan2
CERT1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1330,860,103 - 30,964,991 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl330,859,569 - 30,962,337 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha332,103,058 - 32,208,205 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0330,790,108 - 30,895,067 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl330,789,601 - 30,894,150 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1330,720,122 - 30,825,163 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0330,690,724 - 30,795,472 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0331,068,667 - 31,173,845 (+)NCBIUU_Cfam_GSD_1.0
Cert1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213189,487,607 - 189,597,296 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365491,261,931 - 1,371,380 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365491,261,913 - 1,368,743 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CERT1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl284,413,340 - 84,537,783 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1284,410,425 - 84,538,018 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2286,049,673 - 86,174,690 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CERT1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1469,696,926 - 69,843,000 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl469,708,205 - 69,842,338 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604918,481,646 - 18,628,324 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cert1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624951721,411 - 828,150 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624951718,380 - 828,220 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Cert1
3763 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:2124
Count of miRNA genes:502
Interacting mature miRNAs:625
Transcripts:ENSMUST00000077672, ENSMUST00000109444, ENSMUST00000179226
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1558741Ses10_msalmonella enteritidis susceptibility 10 (mouse)Not determined1382739968116740106Mouse
10043997Bw40_mbody weight QTL 40 (mouse)Not determined1479239045113239162Mouse
1301142Heal2_mwound healing/regeneration 2 (mouse)Not determined1393875267120883175Mouse
1357468Rplag_mreduced platelet aggregation (mouse)Not determined1395502130120883175Mouse
1301593Heal8_mwound healing/regeneration 8 (mouse)Not determined1368053999102054119Mouse
4142314Tailaq3_mtail length adjusted QTL 3 (mouse)Not determined55720354112431103Mouse
1301445Listr2_mlisteriosis resistance 2 (mouse)Not determined1366744601100744746Mouse
12880402Emlq1_memotional learning QTL 1 (mouse)137810885896866553Mouse
4141992W6q16_mweight 6 weeks QTL 16 (mouse)Not determined55720354112431103Mouse
1300939Hrtfm6_mheart failure modifier 6 (mouse)Not determined1391383692120883175Mouse
12880414V125Dq10_mvitamin D active form serum level QTL 10 (mouse)1378036508112036508Mouse
4142241Tailq3_mtail length QTL 3 (mouse)Not determined55720354112431103Mouse
1300941Skl6_mskeletal size (tail length) 6 (mouse)Not determined136425082198250945Mouse
14747007Mancz11_mmandible centroid size 11 (mouse)1370111284104111284Mouse
4141728Egaq4_mearly growth adjusted QTL 4 (mouse)Not determined87901985112431103Mouse
1300876Tanidd2_mtally ho associated non-insulin dependednt diabetes mellitus 2 (mouse)Not determined1391965303120883175Mouse
4140959W10q17_mweight 10 weeks QTL 17 (mouse)Not determined55720354112431103Mouse
4141266Mol3_mmodifier of LPS-response 3 (mouse)Not determined76132600112431103Mouse
1301949Skull20_mskull morphology 20 (mouse)Not determined136425082198250945Mouse
10045623Heal18_mwound healing regeneration 18 (mouse)Not determined1379239045113239162Mouse
10402414Sgp5_mserum gp70 production 5 (mouse)Not determined1356470456105422186Mouse
14700691Cisaq1_mcoxsackieviral infection serum ALT QTL 1 (mouse)1386148119120461536Mouse
14696726Kidrq3_mkidney weight, right QTL 3 (mouse)1368217066102217066Mouse
4142147Mvwf4_mmodifier of von Willebrand factor 4 (mouse)Not determined20477612112898424Mouse
4140995Fbtq6_mfemoral bone trait QTL 6 (mouse)Not determined1386341617120341758Mouse
1558763Gct9_mgranulosa cell tumorigenesis 9 (mouse)Not determined1395036824120883175Mouse
4142338Skmw18_mskeletal muscle weight 18 (mouse)Not determined1394528399120883175Mouse
4142465Pbwg17_mpostnatal body weight growth 17 (mouse)Not determined1383876060117876256Mouse

Markers in Region
AU016711  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381396,639,895 - 96,639,980UniSTSGRCm38
MGSCv371397,409,850 - 97,409,935UniSTSGRCm37
Celera13100,279,124 - 100,279,209UniSTS
Cytogenetic Map13D1UniSTS
Whitehead/MRC_RH13842.42UniSTS


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001164222 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_023420 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030247385 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036158141 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC122828 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC154851 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF232932 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF232934 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK012989 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK018103 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK020301 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK030305 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK038061 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK038803 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK047100 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK080958 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK163624 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BB654693 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC016197 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC129882 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466567 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000077672   ⟹   ENSMUSP00000076856
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1396,679,243 - 96,774,058 (+)Ensembl
GRCm38.p6 Ensembl1396,542,735 - 96,637,550 (+)Ensembl
Ensembl Acc Id: ENSMUST00000109444   ⟹   ENSMUSP00000105070
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1396,679,243 - 96,776,675 (+)Ensembl
GRCm38.p6 Ensembl1396,542,735 - 96,640,167 (+)Ensembl
Ensembl Acc Id: ENSMUST00000179226   ⟹   ENSMUSP00000136766
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1396,679,126 - 96,774,523 (+)Ensembl
GRCm38.p6 Ensembl1396,542,618 - 96,638,015 (+)Ensembl
Ensembl Acc Id: ENSMUST00000220464
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1396,679,254 - 96,749,425 (+)Ensembl
GRCm38.p6 Ensembl1396,542,746 - 96,612,917 (+)Ensembl
Ensembl Acc Id: ENSMUST00000221394
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1396,770,808 - 96,772,289 (+)Ensembl
GRCm38.p6 Ensembl1396,634,300 - 96,635,781 (+)Ensembl
Ensembl Acc Id: ENSMUST00000222434
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1396,679,263 - 96,748,247 (+)Ensembl
GRCm38.p6 Ensembl1396,542,755 - 96,611,739 (+)Ensembl
Ensembl Acc Id: ENSMUST00000223471
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1396,765,563 - 96,772,376 (+)Ensembl
GRCm38.p6 Ensembl1396,629,055 - 96,635,868 (+)Ensembl
RefSeq Acc Id: NM_001164222   ⟹   NP_001157694
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391396,679,243 - 96,776,675 (+)NCBI
GRCm381396,542,735 - 96,640,167 (+)ENTREZGENE
MGSCv371397,312,690 - 97,410,122 (+)RGD
Celera13100,179,310 - 100,279,400 (+)RGD
cM Map13 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_023420   ⟹   NP_075909
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391396,679,243 - 96,776,675 (+)NCBI
GRCm381396,542,735 - 96,640,167 (+)ENTREZGENE
MGSCv371397,312,690 - 97,410,122 (+)RGD
Celera13100,179,310 - 100,279,400 (+)RGD
cM Map13 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_030247385   ⟹   XP_030103245
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391396,679,249 - 96,780,615 (+)NCBI
GRCm381396,542,709 - 96,640,163 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036158141   ⟹   XP_036014034
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391396,679,334 - 96,782,362 (+)NCBI
Sequence:
RefSeq Acc Id: NP_075909   ⟸   NM_023420
- Peptide Label: isoform 1
- UniProtKB: Q9EQG9 (UniProtKB/Swiss-Prot),   Q9CU52 (UniProtKB/Swiss-Prot),   Q91WB1 (UniProtKB/Swiss-Prot),   Q8CAR3 (UniProtKB/Swiss-Prot),   Q8C8H3 (UniProtKB/Swiss-Prot),   Q8BNN8 (UniProtKB/Swiss-Prot),   Q3TQF6 (UniProtKB/Swiss-Prot),   Q9EQG8 (UniProtKB/Swiss-Prot),   Q8BSX8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001157694   ⟸   NM_001164222
- Peptide Label: isoform 2
- UniProtKB: Q8BSX8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_030103245   ⟸   XM_030247385
- Peptide Label: isoform X1
Ensembl Acc Id: ENSMUSP00000136766   ⟸   ENSMUST00000179226
Ensembl Acc Id: ENSMUSP00000105070   ⟸   ENSMUST00000109444
Ensembl Acc Id: ENSMUSP00000076856   ⟸   ENSMUST00000077672
RefSeq Acc Id: XP_036014034   ⟸   XM_036158141
- Peptide Label: isoform X2
- UniProtKB: Q8BSX8 (UniProtKB/TrEMBL)
Protein Domains
PH   START

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9EQG9-F1-model_v2 AlphaFold Q9EQG9 1-624 view protein structure

Promoters
RGD ID:8681072
Promoter ID:EPDNEW_M18567
Type:multiple initiation site
Name:Col4a3bp_1
Description:Mus musculus collagen, type IV, alpha 3 binding protein , transcriptvariant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381396,542,747 - 96,542,807EPDNEW
RGD ID:6823796
Promoter ID:MM_KWN:14977
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000091385,   ENSMUST00000091386,   ENSMUST00000091387,   ENSMUST00000109446,   ENSMUST00000109449,   NM_001164222,   NM_012048,   NM_023420,   NM_023420_COL4A3BP,   UC007RNG.1,   UC007RNH.1,   UC007RNI.1,   UC007RNJ.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361397,312,351 - 97,313,502 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1915268 AgrOrtholog
Ensembl Genes ENSMUSG00000021669 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000077672 ENTREZGENE
  ENSMUST00000077672.12 UniProtKB/Swiss-Prot
  ENSMUST00000109444 ENTREZGENE
  ENSMUST00000109444.3 UniProtKB/Swiss-Prot
Gene3D-CATH 2.30.29.30 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.30.530.20 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro PH-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PH_domain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  STARD11_START UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  START-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  START_lipid-bd_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  START_lipid_transfer UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:68018 UniProtKB/Swiss-Prot
MGD MGI:1915268 ENTREZGENE
NCBI Gene 68018 ENTREZGENE
PANTHER CERAMIDE TRANSFER PROTEIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PHOSPHATIDYLCHOLINE TRANSFER PROTEIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam PF00169 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  START UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Cert1 PhenoGen
PROSITE PH_DOMAIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  START UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART SM00233 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  START UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP Bet v1-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PH domain-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt C43BP_MOUSE UniProtKB/Swiss-Prot
  Q3TQF6 ENTREZGENE
  Q8BNN8 ENTREZGENE
  Q8BSX8 ENTREZGENE, UniProtKB/TrEMBL
  Q8C8H3 ENTREZGENE
  Q8CAR3 ENTREZGENE
  Q91WB1 ENTREZGENE
  Q9CU52 ENTREZGENE
  Q9EQG8 ENTREZGENE
  Q9EQG9 ENTREZGENE
UniProt Secondary Q3TQF6 UniProtKB/Swiss-Prot
  Q8BNN8 UniProtKB/Swiss-Prot
  Q8C8H3 UniProtKB/Swiss-Prot
  Q8CAR3 UniProtKB/Swiss-Prot
  Q91WB1 UniProtKB/Swiss-Prot
  Q9CU52 UniProtKB/Swiss-Prot
  Q9EQG8 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-04-07 Cert1  ceramide transporter 1  Col4a3bp  collagen, type IV, alpha 3 (Goodpasture antigen) binding protein  Symbol and/or name change 5135510 APPROVED