Cd19 (CD19 antigen) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Cd19 (CD19 antigen) Mus musculus
Analyze
Symbol: Cd19
Name: CD19 antigen
RGD ID: 1319229
MGI Page MGI
Description: Involved in several processes, including B-1 B cell differentiation; positive regulation of release of sequestered calcium ion into cytosol; and regulation of signal transduction. Acts upstream of or within B cell receptor signaling pathway. Located in external side of plasma membrane. Is expressed in liver and spleen. Human ortholog(s) of this gene implicated in common variable immunodeficiency 3. Orthologous to human CD19 (CD19 molecule).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: AW495831; B-lymphocyte antigen CD19; differentiation antigen CD19
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm397126,007,620 - 126,016,401 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl7126,007,622 - 126,014,061 (-)EnsemblGRCm39 Ensembl
GRCm387126,408,448 - 126,415,148 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl7126,408,450 - 126,414,889 (-)EnsemblGRCm38mm10GRCm38
MGSCv377133,551,962 - 133,558,384 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv367126,199,599 - 126,205,984 (-)NCBIMGSCv36mm8
Celera7126,260,695 - 126,267,103 (-)NCBICelera
Cytogenetic Map7F3NCBI
cM Map769.01NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-catechin  (ISO)
(+)-schisandrin B  (ISO)
1,2-dichloroethane  (EXP)
1,2-dimethylhydrazine  (EXP,ISO)
1-naphthyl isothiocyanate  (ISO)
17beta-estradiol  (ISO)
17beta-estradiol 3-benzoate  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP)
2,6-di-tert-butyl-4-methylphenol  (EXP)
2-butoxyethanol  (EXP)
2-palmitoylglycerol  (ISO)
3,7-dihydropurine-6-thione  (ISO)
aldehydo-D-glucose  (EXP)
alpha-Zearalanol  (ISO)
amphetamine  (ISO)
benzo[a]pyrene  (EXP,ISO)
benzo[b]fluoranthene  (EXP)
beta-hexachlorocyclohexane  (EXP)
bis(2-ethylhexyl) phthalate  (EXP,ISO)
bisphenol A  (EXP,ISO)
buta-1,3-diene  (EXP)
C60 fullerene  (ISO)
carbon nanotube  (EXP)
CGP 52608  (ISO)
chloroprene  (EXP)
D-glucose  (EXP)
deguelin  (ISO)
dexamethasone phosphate  (ISO)
dextran sulfate  (EXP)
Dibutyl phosphate  (ISO)
dioxygen  (EXP)
dorsomorphin  (ISO)
entinostat  (ISO)
fingolimod hydrochloride  (ISO)
fructose  (EXP)
glucose  (EXP)
glyphosate  (EXP)
gold atom  (ISO)
gold(0)  (ISO)
hydroxychloroquine  (ISO)
lipopolysaccharide  (ISO)
mercaptopurine  (ISO)
methotrexate  (ISO)
methyl methanesulfonate  (ISO)
ozone  (EXP,ISO)
paraquat  (ISO)
pirinixic acid  (EXP)
pregnenolone 16alpha-carbonitrile  (EXP)
purine-6-thiol  (ISO)
S-(1,2-dichlorovinyl)-L-cysteine  (ISO)
SB 431542  (ISO)
silicon dioxide  (ISO)
sodium arsenite  (EXP)
sulfasalazine  (ISO)
testosterone  (ISO)
tetrachloromethane  (ISO)
tetraphene  (EXP)
titanium dioxide  (EXP)
trichloroethene  (ISO)
triphenyl phosphate  (ISO)
triptonide  (EXP)
urethane  (ISO)
valproic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
abnormal adaptive immunity  (IAGP)
abnormal B cell activation  (IAGP)
abnormal B cell differentiation  (IAGP)
abnormal B cell morphology  (IAGP)
abnormal B cell negative selection  (IAGP)
abnormal B cell number  (IAGP)
abnormal B cell physiology  (IAGP)
abnormal B-1 B cell morphology  (IAGP)
abnormal B-1 B cell number  (IAGP)
abnormal B-1a B cell morphology  (IAGP)
abnormal B-2 B cell morphology  (IAGP)
abnormal bone marrow cell number  (IAGP)
abnormal CD4-positive, alpha-beta T cell physiology  (IAGP)
abnormal CD8-positive, alpha-beta T cell physiology  (IAGP)
abnormal class switch recombination  (IAGP)
abnormal coat appearance  (IAGP)
abnormal dendritic cell physiology  (IAGP)
abnormal effector T cell morphology  (IAGP)
abnormal endoplasmic reticulum morphology  (IAGP)
abnormal follicular B cell morphology  (IAGP)
abnormal germinal center B cell physiology  (IAGP)
abnormal humoral immune response  (IAGP)
abnormal immune serum protein physiology  (IAGP)
abnormal immune system organ morphology  (IAGP)
abnormal immune system physiology  (IAGP)
abnormal immunoglobulin level  (IAGP)
abnormal kidney morphology  (IAGP)
abnormal kidney physiology  (IAGP)
abnormal leukocyte cell number  (IAGP)
abnormal leukocyte morphology  (IAGP)
abnormal liver morphology  (IAGP)
abnormal lymph node B cell domain morphology  (IAGP)
abnormal lymph node cell ratio  (IAGP)
abnormal lymph node germinal center morphology  (IAGP)
abnormal lymph organ size  (IAGP)
abnormal lymphocyte cell number  (IAGP)
abnormal lymphocyte morphology  (IAGP)
abnormal lymphopoiesis  (IAGP)
abnormal marginal zone B cell physiology  (IAGP)
abnormal mature B cell morphology  (IAGP)
abnormal memory B cell number  (IAGP)
abnormal mitochondrial physiology  (IAGP)
abnormal myeloid leukocyte morphology  (IAGP)
abnormal peripheral B cell anergy  (IAGP)
abnormal Peyer's patch follicle morphology  (IAGP)
abnormal Peyer's patch germinal center morphology  (IAGP)
abnormal Peyer's patch morphology  (IAGP)
abnormal plasma cell differentiation  (IAGP)
abnormal plasma cell morphology  (IAGP)
abnormal plasmablast number  (IAGP)
abnormal pre-B cell morphology  (IAGP)
abnormal pro-B cell differentiation  (IAGP)
abnormal pro-B cell morphology  (IAGP)
abnormal renal glomerulus morphology  (IAGP)
abnormal somatic hypermutation frequency  (IAGP)
abnormal spleen B cell follicle morphology  (IAGP)
abnormal spleen follicular dendritic cell network  (IAGP)
abnormal spleen germinal center morphology  (IAGP)
abnormal spleen marginal zone macrophage morphology  (IAGP)
abnormal spleen marginal zone morphology  (IAGP)
abnormal spleen morphology  (IAGP)
abnormal spleen white pulp morphology  (IAGP)
abnormal splenic cell ratio  (IAGP)
abnormal T cell activation  (IAGP)
abnormal T cell physiology  (IAGP)
abnormal transitional stage B cell morphology  (IAGP)
abnormal transitional stage T3 B cell morphology  (IAGP)
absent early pro-B cells  (IAGP)
absent follicular dendritic cells  (IAGP)
absent immature B cells  (IAGP)
absent late pro-B cells  (IAGP)
absent marginal zone B cells  (IAGP)
absent mature B cells  (IAGP)
absent plasma cells  (IAGP)
absent pre-B cells  (IAGP)
absent spleen germinal center  (IAGP)
anemia  (IAGP)
arrested B cell differentiation  (IAGP)
arteritis  (IAGP)
autoimmune response  (IAGP)
cachexia  (IAGP)
chromosome breakage  (IAGP)
decreased anti-double stranded DNA antibody level  (IAGP)
decreased anti-nuclear antigen antibody level  (IAGP)
decreased autoantibody level  (IAGP)
decreased B cell apoptosis  (IAGP)
decreased B cell number  (IAGP)
decreased B cell proliferation  (IAGP)
decreased B-1 B cell number  (IAGP)
decreased B-1a cell number  (IAGP)
decreased B-1b cell number  (IAGP)
decreased B-2 B cell number  (IAGP)
decreased circulating interferon-gamma level  (IAGP)
decreased circulating interleukin-10 level  (IAGP)
decreased circulating interleukin-4 level  (IAGP)
decreased circulating interleukin-6 level  (IAGP)
decreased circulating tumor necrosis factor level  (IAGP)
decreased follicular B cell number  (IAGP)
decreased germinal center B cell number  (IAGP)
decreased IgA level  (IAGP)
decreased IgD level  (IAGP)
decreased IgE level  (IAGP)
decreased IgG level  (IAGP)
decreased IgG1 level  (IAGP)
decreased IgG2a level  (IAGP)
decreased IgG2b level  (IAGP)
decreased IgG2c level  (IAGP)
decreased IgG3 level  (IAGP)
decreased IgM level  (IAGP)
decreased immature B cell number  (IAGP)
decreased immunoglobulin level  (IAGP)
decreased interleukin-10 secretion  (IAGP)
decreased lymphocyte cell number  (IAGP)
decreased marginal zone B cell number  (IAGP)
decreased mature B cell number  (IAGP)
decreased neutrophil cell number  (IAGP)
decreased physiological sensitivity to xenobiotic  (IAGP)
decreased plasma cell number  (IAGP)
decreased pre-B cell number  (IAGP)
decreased pro-B cell number  (IAGP)
decreased spleen B cell follicle size  (IAGP)
decreased spleen germinal center number  (IAGP)
decreased spleen germinal center size  (IAGP)
decreased spleen weight  (IAGP)
decreased susceptibility to experimental autoimmune encephalomyelitis  (IAGP)
decreased susceptibility to injury  (IAGP)
decreased susceptibility to systemic lupus erythematosus  (IAGP)
decreased T cell number  (IAGP)
decreased transitional stage B cell number  (IAGP)
decreased transitional stage T1 B cell number  (IAGP)
decreased transitional stage T2 B cell number  (IAGP)
decreased transitional stage T3 B cell number  (IAGP)
decreased tumor necrosis factor secretion  (IAGP)
decreased tumor-free survival time  (IAGP)
demyelination  (IAGP)
elevated level of mitotic sister chromatid exchange  (IAGP)
enlarged inguinal lymph nodes  (IAGP)
enlarged liver  (IAGP)
enlarged lymph nodes  (IAGP)
enlarged Peyer's patches  (IAGP)
enlarged spleen  (IAGP)
expanded mesangial matrix  (IAGP)
extramedullary hematopoiesis  (IAGP)
glomerulonephritis  (IAGP)
hunched posture  (IAGP)
impaired humoral immune response  (IAGP)
increased activated T cell number  (IAGP)
increased acute lymphoblastic leukemia incidence  (IAGP)
increased anti-double stranded DNA antibody level  (IAGP)
increased anti-nuclear antigen antibody level  (IAGP)
increased anti-single stranded DNA antibody level  (IAGP)
increased apoptosis  (IAGP)
increased autoantibody level  (IAGP)
increased B cell acute lymphoblastic leukemia incidence  (IAGP)
increased B cell apoptosis  (IAGP)
increased B cell derived lymphoma incidence  (IAGP)
increased B cell number  (IAGP)
increased B cell proliferation  (IAGP)
increased B-1 B cell number  (IAGP)
increased B-1a cell number  (IAGP)
increased B-2 B cell number  (IAGP)
increased blood urea nitrogen level  (IAGP)
increased bone marrow cell number  (IAGP)
increased CD4-positive, alpha-beta T cell number  (IAGP)
increased CD8-positive, alpha-beta T cell number  (IAGP)
increased cell proliferation  (IAGP)
increased chronic lymphocytic leukemia incidence  (IAGP)
increased circulating creatinine level  (IAGP)
increased circulating interleukin-6 level  (IAGP)
increased double-negative T cell number  (IAGP)
increased eosinophil cell number  (IAGP)
increased follicular B cell number  (IAGP)
increased follicular lymphoma incidence  (IAGP)
increased germinal center B cell number  (IAGP)
increased granulocyte number  (IAGP)
increased histiocytic sarcoma incidence  (IAGP)
increased IgA level  (IAGP)
increased IgE level  (IAGP)
increased IgG level  (IAGP)
increased IgG2a level  (IAGP)
increased IgG2b level  (IAGP)
increased IgG3 level  (IAGP)
increased IgM level  (IAGP)
increased immature B cell number  (IAGP)
increased immunoglobulin level  (IAGP)
increased interferon-gamma secretion  (IAGP)
increased interleukin-6 secretion  (IAGP)
increased leukemia incidence  (IAGP)
increased leukocyte cell number  (IAGP)
increased lymphocyte cell number  (IAGP)
increased lymphoma incidence  (IAGP)
increased macrophage cell number  (IAGP)
increased malignant tumor incidence  (IAGP)
increased marginal zone B cell number  (IAGP)
increased mature B cell number  (IAGP)
increased megakaryocyte cell number  (IAGP)
increased memory B cell number  (IAGP)
increased monocyte cell number  (IEA)
increased organ/body region tumor incidence  (IAGP)
increased plasma cell number  (IAGP)
increased plasmacytoma incidence  (IAGP)
increased pre-B cell number  (IAGP)
increased pro-B cell number  (IAGP)
increased regulatory T cell number  (IAGP)
increased sarcoma incidence  (IAGP)
increased small lymphocytic lymphoma incidence  (IAGP)
increased spleen B cell follicle size  (IAGP)
increased spleen germinal center number  (IAGP)
increased spleen germinal center size  (IAGP)
increased spleen weight  (IAGP)
increased spleen white pulp amount  (IAGP)
increased splenic marginal zone lymphoma incidence  (IAGP)
increased splenocyte number  (IAGP)
increased susceptibility to autoimmune disorder  (IAGP)
increased susceptibility to bacterial infection  (IAGP)
increased susceptibility to bacterial infection induced morbidity/mortality  (IAGP)
increased susceptibility to experimental autoimmune encephalomyelitis  (IAGP)
increased susceptibility to induced morbidity/mortality  (IAGP)
increased susceptibility to injury  (IAGP)
increased susceptibility to systemic lupus erythematosus  (IAGP)
increased T cell derived lymphoma incidence  (IAGP)
increased T cell number  (IAGP)
increased T cell proliferation  (IAGP)
increased transitional stage B cell number  (IAGP)
increased transitional stage T1 B cell number  (IAGP)
increased tumor incidence  (IAGP)
increased tumor necrosis factor secretion  (IAGP)
increased urine protein level  (IAGP)
intermingled spleen red and white pulp  (IAGP)
kidney inflammation  (IAGP)
lethargy  (IAGP)
lymph node hyperplasia  (IAGP)
no abnormal phenotype detected  (IAGP)
postnatal lethality, complete penetrance  (IAGP)
premature death  (IAGP)
renal fibrosis  (IAGP)
renal glomerular protein deposits  (IAGP)
skin fibrosis  (IAGP)
small Peyer's patches  (IAGP)
small spleen  (IAGP)
spleen hyperplasia  (IAGP)
spleen hypoplasia  (IAGP)
thick dermal layer  (IAGP)
thrombocytopenia  (IAGP)
weight loss  (IAGP)
References

References - curated
# Reference Title Reference Citation
1. MGDs mouse GO annotations MGD data from the GO Consortium
2. MGD IEA MGD IEA
3. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
4. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
5. Mouse MP Annotation Import Pipeline RGD automated import pipeline
6. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:1370948   PMID:1375324   PMID:1714482   PMID:2472450   PMID:6408173   PMID:7513297   PMID:7542548   PMID:7543183   PMID:8001125   PMID:8524803   PMID:8551222   PMID:9047233  
PMID:9092650   PMID:9144478   PMID:9254656   PMID:9317126   PMID:9380722   PMID:9382888   PMID:9653091   PMID:10192389   PMID:10349636   PMID:10358152   PMID:10485654   PMID:10523614  
PMID:10829070   PMID:10933394   PMID:10940875   PMID:11042159   PMID:11070163   PMID:11076861   PMID:11120817   PMID:11160300   PMID:11163197   PMID:11163229   PMID:11169202   PMID:11217851  
PMID:11384981   PMID:11418645   PMID:11420047   PMID:11509585   PMID:11544305   PMID:11809737   PMID:11896394   PMID:11967543   PMID:12045259   PMID:12235208   PMID:12354378   PMID:12387743  
PMID:12393735   PMID:12421939   PMID:12466851   PMID:12471124   PMID:12486099   PMID:12496385   PMID:12496962   PMID:12563260   PMID:12615906   PMID:12707341   PMID:12714520   PMID:12753744  
PMID:12773615   PMID:12818163   PMID:12882831   PMID:12969314   PMID:12970677   PMID:14530327   PMID:14563324   PMID:14564011   PMID:14614856   PMID:14634103   PMID:14645513   PMID:14662849  
PMID:14668327   PMID:14668867   PMID:14715907   PMID:14990792   PMID:15148335   PMID:15189736   PMID:15314171   PMID:15322182   PMID:15368291   PMID:15378723   PMID:15520044   PMID:15520246  
PMID:15590989   PMID:15644414   PMID:15664162   PMID:15668383   PMID:15749857   PMID:15870264   PMID:15895073   PMID:15908920   PMID:15909309   PMID:15914556   PMID:15933053   PMID:15963789  
PMID:15967784   PMID:16039575   PMID:16055554   PMID:16141072   PMID:16141073   PMID:16148088   PMID:16166635   PMID:16169500   PMID:16186825   PMID:16210644   PMID:16223771   PMID:16227086  
PMID:16311600   PMID:16339538   PMID:16380231   PMID:16424387   PMID:16430962   PMID:16455962   PMID:16455968   PMID:16455997   PMID:16473827   PMID:16477013   PMID:16493007   PMID:16507897  
PMID:16546096   PMID:16607274   PMID:16782029   PMID:16802598   PMID:16841297   PMID:16862162   PMID:16868248   PMID:16920928   PMID:16920934   PMID:16925795   PMID:16938836   PMID:16940357  
PMID:16951689   PMID:16954370   PMID:17000121   PMID:17023430   PMID:17082577   PMID:17107913   PMID:17145771   PMID:17213198   PMID:17213291   PMID:17244677   PMID:17277100   PMID:17322904  
PMID:17379312   PMID:17457934   PMID:17493844   PMID:17509906   PMID:17513743   PMID:17541717   PMID:17556590   PMID:17590442   PMID:17591768   PMID:17600736   PMID:17617599   PMID:17641017  
PMID:17658280   PMID:17658281   PMID:17723217   PMID:17851532   PMID:17878366   PMID:17895374   PMID:17906700   PMID:17911595   PMID:17911619   PMID:17937622   PMID:17998397   PMID:18006702  
PMID:18025150   PMID:18037889   PMID:18059271   PMID:18178811   PMID:18188005   PMID:18191593   PMID:18195359   PMID:18199638   PMID:18212118   PMID:18313334   PMID:18362175   PMID:18371366  
PMID:18375530   PMID:18424188   PMID:18438409   PMID:18467694   PMID:18482568   PMID:18490492   PMID:18509083   PMID:18515089   PMID:18538592   PMID:18552207   PMID:18599325   PMID:18604869  
PMID:18663224   PMID:18684943   PMID:18704194   PMID:18710404   PMID:18768830   PMID:18802059   PMID:18815281   PMID:18832734   PMID:18835195   PMID:18955699   PMID:18978794   PMID:19013083  
PMID:19013447   PMID:19016531   PMID:19109151   PMID:19124753   PMID:19139091   PMID:19164450   PMID:19181385   PMID:19196865   PMID:19228876   PMID:19252491   PMID:19270713   PMID:19270748  
PMID:19407814   PMID:19414755   PMID:19428458   PMID:19483124   PMID:19494255   PMID:19494269   PMID:19541367   PMID:19574428   PMID:19620304   PMID:19633670   PMID:19671922   PMID:19706534  
PMID:19710450   PMID:19710454   PMID:19710472   PMID:19733096   PMID:19752183   PMID:19801979   PMID:19811262   PMID:19828641   PMID:19841173   PMID:19843942   PMID:19896393   PMID:19941312  
PMID:19951693   PMID:20022378   PMID:20060366   PMID:20101619   PMID:20156974   PMID:20226692   PMID:20308364   PMID:20335528   PMID:20368271   PMID:20404103   PMID:20439539   PMID:20439541  
PMID:20449867   PMID:20498068   PMID:20505142   PMID:20507984   PMID:20519643   PMID:20587524   PMID:20595512   PMID:20624940   PMID:20631379   PMID:20660734   PMID:20686032   PMID:20691614  
PMID:20705491   PMID:20709950   PMID:20729201   PMID:20733156   PMID:20826752   PMID:20870947   PMID:20923969   PMID:20956287   PMID:20956547   PMID:21037578   PMID:21093320   PMID:21124917  
PMID:21149607   PMID:21167753   PMID:21178004   PMID:21220515   PMID:21220560   PMID:21245485   PMID:21257969   PMID:21267068   PMID:21281805   PMID:21281806   PMID:21282469   PMID:21297003  
PMID:21300982   PMID:21300983   PMID:21339646   PMID:21341261   PMID:21364747   PMID:21419663   PMID:21423172   PMID:21494554   PMID:21514431   PMID:21572028   PMID:21622861   PMID:21666791  
PMID:21674478   PMID:21746811   PMID:21768304   PMID:21795747   PMID:21810615   PMID:21844204   PMID:21873635   PMID:21930766   PMID:21971520   PMID:21998451   PMID:21998589   PMID:22003198  
PMID:22033491   PMID:22058414   PMID:22067385   PMID:22084093   PMID:22156495   PMID:22174151   PMID:22205023   PMID:22244885   PMID:22293205   PMID:22306056   PMID:22341446   PMID:22343728  
PMID:22351938   PMID:22354001   PMID:22386268   PMID:22393151   PMID:22406270   PMID:22431510   PMID:22438996   PMID:22496360   PMID:22504650   PMID:22517907   PMID:22546857   PMID:22547703  
PMID:22564057   PMID:22589392   PMID:22666421   PMID:22692512   PMID:22724016   PMID:22782898   PMID:22802351   PMID:22826319   PMID:22837485   PMID:22851713   PMID:22893686   PMID:22933629  
PMID:22940690   PMID:22956576   PMID:23023393   PMID:23041568   PMID:23045607   PMID:23064231   PMID:23071339   PMID:23086144   PMID:23109711   PMID:23112125   PMID:23135975   PMID:23142780  
PMID:23150717   PMID:23166633   PMID:23170251   PMID:23203925   PMID:23254285   PMID:23263554   PMID:23264658   PMID:23275601   PMID:23290137   PMID:23306439   PMID:23327930   PMID:23343763  
PMID:23408915   PMID:23416976   PMID:23421592   PMID:23454348   PMID:23460609   PMID:23499488   PMID:23499492   PMID:23509369   PMID:23529858   PMID:23544158   PMID:23583649   PMID:23591791  
PMID:23619366   PMID:23630391   PMID:23652018   PMID:23657012   PMID:23684984   PMID:23690468   PMID:23740949   PMID:23772037   PMID:23803853   PMID:23847204   PMID:23858034   PMID:23864655  
PMID:23872144   PMID:23921550   PMID:24013782   PMID:24026082   PMID:24043771   PMID:24062412   PMID:24115031   PMID:24127487   PMID:24170780   PMID:24177426   PMID:24199708   PMID:24218455  
PMID:24223520   PMID:24227595   PMID:24227779   PMID:24239354   PMID:24241423   PMID:24242374   PMID:24242955   PMID:24244162   PMID:24301657   PMID:24323356   PMID:24352880   PMID:24418753  
PMID:24472602   PMID:24586648   PMID:24591644   PMID:24610013   PMID:24616478   PMID:24646739   PMID:24675885   PMID:24743949   PMID:24747745   PMID:24790152   PMID:24840646   PMID:24842372  
PMID:24854422   PMID:24855946   PMID:24881819   PMID:24913005   PMID:24913234   PMID:24938766   PMID:24963139   PMID:25015818   PMID:25044405   PMID:25078688   PMID:25079358   PMID:25101629  
PMID:25180063   PMID:25238757   PMID:25263549   PMID:25320092   PMID:25332234   PMID:25411201   PMID:25505273   PMID:25516754   PMID:25526313   PMID:25555218   PMID:25630702   PMID:25639866  
PMID:25646472   PMID:25657250   PMID:25673724   PMID:25676421   PMID:25706117   PMID:25727904   PMID:25746967   PMID:25776744   PMID:25783157   PMID:25881561   PMID:25895531   PMID:25924065  
PMID:25933166   PMID:26000908   PMID:26008897   PMID:26041538   PMID:26082558   PMID:26098211   PMID:26103922   PMID:26147686   PMID:26179907   PMID:26276629   PMID:26276664   PMID:26301816  
PMID:26308889   PMID:26329582   PMID:26366710   PMID:26366712   PMID:26437243   PMID:26443207   PMID:26453379   PMID:26459601   PMID:26527007   PMID:26553386   PMID:26612263   PMID:26668357  
PMID:26697058   PMID:26732477   PMID:26744420   PMID:26755589   PMID:26764599   PMID:26785352   PMID:26785945   PMID:26795252   PMID:26809508   PMID:26837762   PMID:26841869   PMID:26851215  
PMID:26852110   PMID:26868208   PMID:26880763   PMID:26901150   PMID:26932576   PMID:26965188   PMID:26983787   PMID:27013173   PMID:27048211   PMID:27054584   PMID:27069112   PMID:27096320  
PMID:27135738   PMID:27146354   PMID:27183592   PMID:27245614   PMID:27287239   PMID:27303031   PMID:27320916   PMID:27346348   PMID:27428827   PMID:27451974   PMID:27457619   PMID:27457956  
PMID:27477692   PMID:27481093   PMID:27511730   PMID:27524497   PMID:27568564   PMID:27573825   PMID:27655694   PMID:27664314   PMID:27708418   PMID:27729526   PMID:27733688   PMID:27752131  
PMID:27758892   PMID:27773933   PMID:27856754   PMID:27872905   PMID:27883180   PMID:27893700   PMID:27895164   PMID:27935477   PMID:28003380   PMID:28031336   PMID:28039360   PMID:28056051  
PMID:28067900   PMID:28069569   PMID:28087238   PMID:28135254   PMID:28240602   PMID:28241004   PMID:28250425   PMID:28351982   PMID:28408722   PMID:28461481   PMID:28461496   PMID:28474779  
PMID:28515280   PMID:28541550   PMID:28584007   PMID:28615414   PMID:28628091   PMID:28630091   PMID:28707394   PMID:28747342   PMID:28751718   PMID:28814605   PMID:28818832   PMID:28821013  
PMID:28825697   PMID:28855737   PMID:28892044   PMID:28904198   PMID:28912125   PMID:28923960   PMID:28931676   PMID:28970470   PMID:29053971   PMID:29078319   PMID:29176738   PMID:29186687  
PMID:29187734   PMID:29249358   PMID:29288200   PMID:29297752   PMID:29311308   PMID:29326230   PMID:29335647   PMID:29337138   PMID:29352038   PMID:29374074   PMID:29461978   PMID:29503648  
PMID:29507226   PMID:29520062   PMID:29531164   PMID:29545197   PMID:29573361   PMID:29581109   PMID:29581354   PMID:29765016   PMID:29768210   PMID:29802242   PMID:29898388   PMID:29907570  
PMID:29996100   PMID:29999501   PMID:30002144   PMID:30013146   PMID:30049881   PMID:30107177   PMID:30144045   PMID:30232138   PMID:30274972   PMID:30293785   PMID:30297340   PMID:30341187  
PMID:30373853   PMID:30374346   PMID:30467111   PMID:30471095   PMID:30505302   PMID:30524445   PMID:30538335   PMID:30566244   PMID:30566881   PMID:30604754   PMID:30610163   PMID:30612739  
PMID:30643147   PMID:30700585   PMID:30704900   PMID:30705387   PMID:30712845   PMID:30723466   PMID:30796181   PMID:30802940   PMID:30842412   PMID:30930901   PMID:30936881   PMID:30964743  
PMID:30996287   PMID:31028100   PMID:31042474   PMID:31076359   PMID:31085591   PMID:31086255   PMID:31092637   PMID:31116977   PMID:31126966   PMID:31160601   PMID:31189594   PMID:31231033  
PMID:31285298   PMID:31291582   PMID:31328158   PMID:31356162   PMID:31371561   PMID:31380807   PMID:31391233   PMID:31467060   PMID:31474988   PMID:31477755   PMID:31479431   PMID:31492745  
PMID:31552021   PMID:31552025   PMID:31562190   PMID:31563850   PMID:31586401   PMID:31697816   PMID:31723036   PMID:31767615   PMID:31771880   PMID:31775041   PMID:31775046   PMID:31775048  
PMID:31803941   PMID:31819256   PMID:31826940   PMID:31921164   PMID:31932498   PMID:31945014   PMID:31974357   PMID:31980536   PMID:32005754   PMID:32014271   PMID:32024640   PMID:32041873  
PMID:32130409   PMID:32142650   PMID:32161189   PMID:32169821   PMID:32188705   PMID:32191633   PMID:32266269   PMID:32298648   PMID:32321819   PMID:32332108   PMID:32353250   PMID:32414809  
PMID:32424104   PMID:32522871   PMID:32525846   PMID:32547538   PMID:32572241   PMID:32591397   PMID:32609329   PMID:32619424   PMID:32663200   PMID:32668241   PMID:32680956   PMID:32755592  
PMID:32878998   PMID:32887751   PMID:32905775   PMID:32938907   PMID:32983140   PMID:32999453   PMID:33004854   PMID:33027637   PMID:33075129   PMID:33098669   PMID:33149302   PMID:33207194  
PMID:33215753   PMID:33293517   PMID:33326020   PMID:33336366   PMID:33343574   PMID:33361812   PMID:33362210   PMID:33406440   PMID:33432228   PMID:33483505   PMID:33483537   PMID:33512383  
PMID:33639170   PMID:33689703   PMID:33724364   PMID:33750849   PMID:33850140   PMID:33876205   PMID:33971183   PMID:34006859   PMID:34013598   PMID:34031614   PMID:34077723   PMID:34080972  
PMID:34083450   PMID:34193976   PMID:34234346   PMID:34255829   PMID:34301844   PMID:34313733   PMID:34470858   PMID:34521752   PMID:34528666   PMID:34546980   PMID:34552055   PMID:34552589  
PMID:34594237   PMID:34608861   PMID:34625792   PMID:34659198   PMID:34685673   PMID:34686499   PMID:34693907   PMID:34745083   PMID:34837777   PMID:34919443   PMID:34972067   PMID:34983926  
PMID:34991655   PMID:35045301   PMID:35046933   PMID:35053209   PMID:35139388   PMID:35172136   PMID:35189575   PMID:35226736   PMID:35236989   PMID:35316216   PMID:35320716   PMID:35324937  
PMID:35344582   PMID:35346967   PMID:35349789   PMID:35352063   PMID:35355990   PMID:35383266   PMID:35416772   PMID:35417681   PMID:35422437   PMID:35439434   PMID:35443279   PMID:35493485  
PMID:35494252   PMID:35636458   PMID:35659337   PMID:35753001   PMID:35805144   PMID:35815807   PMID:35830810   PMID:35868310   PMID:35921433   PMID:36001653   PMID:36078100   PMID:36098746  
PMID:36198789   PMID:36272416   PMID:36426970   PMID:36427301   PMID:36450247   PMID:36451830   PMID:36458995   PMID:36462502   PMID:36468984   PMID:36475902   PMID:36477199   PMID:36542058  
PMID:36631557   PMID:36637517   PMID:36656933   PMID:36756127   PMID:36852270   PMID:36883978   PMID:37012862   PMID:37159457   PMID:37160922   PMID:37171241   PMID:37200190   PMID:37540725  
PMID:37579982   PMID:37606042   PMID:37671595   PMID:37721965   PMID:37775560   PMID:37990035   PMID:38049580   PMID:38060829   PMID:38170993   PMID:38182585   PMID:38355793   PMID:38458187  
PMID:38458188   PMID:38618959   PMID:38669336   PMID:38762479   PMID:38772371   PMID:38861384   PMID:38923993  


Genomics

Comparative Map Data
Cd19
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm397126,007,620 - 126,016,401 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl7126,007,622 - 126,014,061 (-)EnsemblGRCm39 Ensembl
GRCm387126,408,448 - 126,415,148 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl7126,408,450 - 126,414,889 (-)EnsemblGRCm38mm10GRCm38
MGSCv377133,551,962 - 133,558,384 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv367126,199,599 - 126,205,984 (-)NCBIMGSCv36mm8
Celera7126,260,695 - 126,267,103 (-)NCBICelera
Cytogenetic Map7F3NCBI
cM Map769.01NCBI
CD19
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381628,931,971 - 28,939,342 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1628,931,965 - 28,939,342 (+)EnsemblGRCh38hg38GRCh38
GRCh371628,943,292 - 28,950,663 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361628,850,761 - 28,858,164 (+)NCBINCBI36Build 36hg18NCBI36
Build 341628,850,778 - 28,858,164NCBI
Celera1627,898,547 - 27,905,955 (+)NCBICelera
Cytogenetic Map16p11.2NCBI
HuRef1626,811,236 - 26,818,644 (+)NCBIHuRef
CHM1_11629,955,058 - 29,962,466 (+)NCBICHM1_1
T2T-CHM13v2.01629,213,087 - 29,220,458 (+)NCBIT2T-CHM13v2.0
Cd19
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81190,417,853 - 190,424,494 (-)NCBIGRCr8
mRatBN7.21180,987,286 - 180,993,920 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1180,987,286 - 180,993,975 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1189,317,795 - 189,324,202 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01196,503,868 - 196,510,275 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01189,191,831 - 189,198,238 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01197,815,422 - 197,822,123 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1197,815,413 - 197,821,936 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01204,797,142 - 204,803,811 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41185,501,247 - 185,507,665 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11185,651,237 - 185,657,781 (-)NCBI
Celera1178,647,453 - 178,653,862 (-)NCBICelera
Cytogenetic Map1q36NCBI
Cd19
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554936,540,160 - 6,544,077 (-)NCBIChiLan1.0ChiLan1.0
CD19
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21831,817,925 - 31,830,234 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11636,633,431 - 36,647,555 (-)NCBINHGRI_mPanPan1
PanPan1.11629,320,734 - 29,327,860 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1629,320,734 - 29,327,481 (+)Ensemblpanpan1.1panPan2
CD19
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1618,419,092 - 18,425,524 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl618,418,241 - 18,425,400 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha619,996,893 - 20,002,738 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0618,554,690 - 18,560,536 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl618,553,713 - 18,560,534 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1618,354,194 - 18,360,033 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0618,268,778 - 18,274,610 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0618,585,154 - 18,591,002 (+)NCBIUU_Cfam_GSD_1.0
Cd19
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344123,696,040 - 123,702,092 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493650111,793,891 - 11,804,162 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493650111,793,903 - 11,807,410 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CD19
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl318,592,880 - 18,601,263 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1318,592,785 - 18,601,273 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2318,778,828 - 18,787,202 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CD19
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1526,140,703 - 26,145,447 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660683,488,252 - 3,496,819 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cd19
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462478212,845,432 - 12,850,576 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462478212,844,148 - 12,850,770 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Cd19
266 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:402
Count of miRNA genes:280
Interacting mature miRNAs:331
Transcripts:ENSMUST00000032968
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357460Vtbt4_mvertebral trabecular bone trait 4 (mouse)Not determined7101693381135693530Mouse
25314307Mlh1fc2_mMLH1 foci count 2 (mouse)76502999133501729Mouse
11059561Lmr21a_mleishmaniasis resistance 21a (mouse)7117750722127967336Mouse
38501066Tip2_mtuberculosis immunophenotype 2, spleen CFU (mouse)7124299223126899172Mouse
26884440Sklq4_mskull length QTL 4, 5 week (mouse)765249748126499172Mouse
27095903Scvln10_msacral vertebrae length 2, 10 week (mouse)781449748126499172Mouse
11059562Lmr21b_mleishmaniasis resistance 21b (mouse)7110967235144967336Mouse
1302032Alcp12_malcohol preference locus 12 (mouse)Not determined7111166122144995196Mouse
27226778Femd11_mfemur midshaft diameter 11, 16 week (mouse)756949748134001729Mouse
4141945Il4ppq_mIL-4 producing potential QTL (mouse)Not determined7124513662128819324Mouse
11039524Tbbr3_mTrypanosoma brucei brucei response 3 (mouse)7100750722134750843Mouse
27226769Tibl12_mtibia length 12, 10 week (mouse)787249208126499172Mouse
12792978Fbmd3_mfemoral bone mineral density 3, females only (mouse)77050288142367832Mouse
27226765Tibl18_mtibia length 18, 16 week (mouse)781849748126499172Mouse
4142444Femwf5_mfemur work to failure 5 (mouse)Not determined112552248144995196Mouse
1301447Fembm3_mfemoral bone morphometry 3 (mouse)Not determined7100993261134993342Mouse
10412104Tons2_mtongue size 2 (mouse)Not determined799837716133837716Mouse
1300677Bmd9_mbone mineral density 9 (mouse)Not determined7116634089144995196Mouse
4142312Nilac4_mnicotine induced locomotor activity 4 (mouse)Not determined7102485219136485380Mouse
1300747Skts2_mskin tumor susceptibility 2 (mouse)Not determined7112922733144995196Mouse
1301898Alcp14_malcohol preference locus 14 (mouse)Not determined7111166122144995196Mouse
38501072Stsl7_mSalmonella typhimurium susceptibility locus 7 (mouse)7115699235128501724Mouse
1357711Adbg1_madult body growth 1 (mouse)Not determined7118693381144398314Mouse
1301903Tlsm1_mthymic lymphoma susceptible 1 (mouse)Not determined7122250663135170901Mouse
10402499Lmr21_mleishmaniasis resistance 21 (mouse)Not determined7110967235144967336Mouse
1301773Stheal7_msoft tissue heal 7 (mouse)Not determined7119132573144995196Mouse
27226751Femd5_mfemur midshaft diameter 5, 10 week (mouse)753249748143153737Mouse
27095933Ulnl3_mulna length 3, 5 week (mouse)773149748143153737Mouse
1301105Cfld4_mcystic fibrosis lung disease 4 (mouse)Not determined7101693381135693530Mouse
1300721Cfbw3_mcystic fibrosis body weight 3 (mouse)Not determined7101693381135693530Mouse
1300528Ssial3_msusceptibility to sialadenitis 3 (mouse)Not determined793391848127392041Mouse
27095930Ulnl10_mulna length 10, 16 week (mouse)780849748126699172Mouse
5491192Mobq1_mmultigenic obesity QTL 1 (mouse)Not determined7105250663139250811Mouse
14700684Civq1_mcerebral infarct volume QTL 1 (mouse)7109707335143707335Mouse
1300670Sluc19_msusceptibility to lung cancer 19 (mouse)Not determined7111166122144995196Mouse
14700687Civq5_mcerebral infarct volume QTL 5 (mouse)7109707335143707335Mouse
14700688Civq6_mcerebral infarct volume QTL 6 (mouse)7109707335143707335Mouse
26884398Humsd6_mhumerus midshaft diameter 6, 16 week (mouse)778649748136901729Mouse
1301158Eae4_msusceptibility to experimental allergic encephalomyelitis 4 (mouse)Not determined719147398141919804Mouse
1301478Eae26_msusceptibility to experimental allergic encephalomyelitis 26 (mouse)Not determined798164922132165010Mouse
27226790Feml15_mfemur length 15, 10 week (mouse)787249208126499172Mouse
1357613Bsbob2_mBSB obesity 2 (mouse)Not determined7122250663128819324Mouse
13524852Asrq7a_macoustic startle response 7a (mouse)7105350008139350008Mouse
13524850Asrq7_macoustic startle response 7 (mouse)798394974132394974Mouse
15092059Wogrme1_mweek one growth rate, maternal effect 1 (mouse)7117199227134101729Mouse

Markers in Region
AW495831  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm387126,408,703 - 126,408,832UniSTSGRCm38
MGSCv377133,552,217 - 133,552,346UniSTSGRCm37
Celera7126,260,950 - 126,261,079UniSTS
Cytogenetic Map7F3-F4UniSTS
Whitehead/MRC_RH71292.76UniSTS
M62553  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm387126,408,988 - 126,409,146UniSTSGRCm38
MGSCv377133,552,502 - 133,552,660UniSTSGRCm37
Celera7126,261,235 - 126,261,393UniSTS
Cytogenetic Map7F3-F4UniSTS
Whitehead_YAC7 UniSTS
PMC123054P1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm387126,413,893 - 126,414,484UniSTSGRCm38
MGSCv377133,557,407 - 133,557,998UniSTSGRCm37
Celera7126,266,130 - 126,266,721UniSTS
Cytogenetic Map7F3-F4UniSTS
Cd19  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm387126,409,416 - 126,409,632UniSTSGRCm38
MGSCv377133,552,930 - 133,553,146UniSTSGRCm37
Celera7126,261,663 - 126,261,879UniSTS
Cytogenetic Map7F3-F4UniSTS
cM Map759.0UniSTS
Cd19  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map7F3-F4UniSTS


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001357091 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_009844 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_178083 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036152614 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036152615 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC125322 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AH001873 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK089835 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK156125 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK163608 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK172008 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BE686865 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY234629 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466531 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M28240 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M62542 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M84372 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000032968   ⟹   ENSMUSP00000032968
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7126,007,623 - 126,014,044 (-)Ensembl
GRCm38.p6 Ensembl7126,408,451 - 126,414,872 (-)Ensembl
Ensembl Acc Id: ENSMUST00000205848
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7126,008,534 - 126,008,968 (-)Ensembl
GRCm38.p6 Ensembl7126,409,362 - 126,409,796 (-)Ensembl
Ensembl Acc Id: ENSMUST00000205997
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7126,007,622 - 126,014,040 (-)Ensembl
GRCm38.p6 Ensembl7126,408,450 - 126,414,868 (-)Ensembl
Ensembl Acc Id: ENSMUST00000206325   ⟹   ENSMUSP00000145803
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7126,007,623 - 126,014,061 (-)Ensembl
GRCm38.p6 Ensembl7126,408,451 - 126,414,889 (-)Ensembl
Ensembl Acc Id: ENSMUST00000206871
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7126,012,834 - 126,013,722 (-)Ensembl
GRCm38.p6 Ensembl7126,413,662 - 126,414,550 (-)Ensembl
RefSeq Acc Id: NM_001357091   ⟹   NP_001344020
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397126,007,620 - 126,014,044 (-)NCBI
GRCm387126,408,448 - 126,414,870 (-)NCBI
Sequence:
RefSeq Acc Id: NM_009844   ⟹   NP_033974
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397126,007,620 - 126,014,044 (-)NCBI
GRCm387126,408,448 - 126,414,870 (-)NCBI
MGSCv377133,551,962 - 133,558,384 (-)RGD
Celera7126,260,695 - 126,267,103 (-)RGD
cM Map7 ENTREZGENE
Sequence:
RefSeq Acc Id: NR_178083
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397126,007,620 - 126,014,044 (-)NCBI
RefSeq Acc Id: XM_036152614   ⟹   XP_036008507
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397126,007,620 - 126,016,401 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036152615   ⟹   XP_036008508
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397126,007,620 - 126,014,318 (-)NCBI
Sequence:
RefSeq Acc Id: NP_033974   ⟸   NM_009844
- Peptide Label: isoform 1 precursor
- UniProtKB: Q542B2 (UniProtKB/Swiss-Prot),   P25918 (UniProtKB/Swiss-Prot),   Q3TA95 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001344020   ⟸   NM_001357091
- Peptide Label: isoform 2 precursor
- UniProtKB: A0A0X1KG58 (UniProtKB/TrEMBL),   Q3U1A5 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSMUSP00000032968   ⟸   ENSMUST00000032968
Ensembl Acc Id: ENSMUSP00000145803   ⟸   ENSMUST00000206325
RefSeq Acc Id: XP_036008507   ⟸   XM_036152614
- Peptide Label: isoform X1
- UniProtKB: Q3TQG5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_036008508   ⟸   XM_036152615
- Peptide Label: isoform X2
Protein Domains
Ig-like   Ig-like C2-type

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P25918-F1-model_v2 AlphaFold P25918 1-547 view protein structure

Promoters
RGD ID:8665529
Promoter ID:EPDNEW_M10796
Type:initiation region
Name:Cd19_1
Description:Mus musculus CD19 antigen , transcript variant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm387126,414,872 - 126,414,932EPDNEW
RGD ID:6840803
Promoter ID:MM_KWN:52662
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Lung,   Spleen
Transcripts:NM_009844,   UC009JRB.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv367133,558,171 - 133,558,671 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:88319 AgrOrtholog
Ensembl Genes ENSMUSG00000030724 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000032968 ENTREZGENE
  ENSMUST00000032968.7 UniProtKB/TrEMBL
  ENSMUST00000205997 ENTREZGENE
  ENSMUST00000206325 ENTREZGENE
  ENSMUST00000206325.2 UniProtKB/Swiss-Prot
Gene3D-CATH 2.60.40.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro CD19 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig-like_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig_sub UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:12478 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:88319 ENTREZGENE
NCBI Gene 12478 ENTREZGENE
PANTHER B-LYMPHOCYTE ANTIGEN CD19 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR16674 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Cd19 PhenoGen
PROSITE IG_LIKE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART SM00409 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF48726 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0X1KG58 ENTREZGENE, UniProtKB/TrEMBL
  CD19_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
  Q3TA95 ENTREZGENE, UniProtKB/TrEMBL
  Q3TQG5 ENTREZGENE, UniProtKB/TrEMBL
  Q3U1A5 ENTREZGENE, UniProtKB/TrEMBL
  Q542B2 ENTREZGENE
UniProt Secondary Q542B2 UniProtKB/Swiss-Prot