H13 (histocompatibility 13) - Rat Genome Database

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Gene: H13 (histocompatibility 13) Mus musculus
Analyze
Symbol: H13
Name: histocompatibility 13
RGD ID: 1319014
MGI Page MGI
Description: Predicted to enable aspartic endopeptidase activity, intramembrane cleaving; protein homodimerization activity; and ubiquitin protein ligase binding activity. Acts upstream of or within in utero embryonic development. Located in cell surface and endoplasmic reticulum membrane. Is expressed in several structures, including alimentary system; brain; embryo ectoderm; extraembryonic component; and musculoskeletal system. Orthologous to human HM13 (histocompatibility minor 13).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 1200006O09Rik; 4930443L17Rik; 5031424B04Rik; AV020344; H-13; Hm13; minor histocompatibility antigen H13; presenilin-like aspartyl protease; presenilin-like protein 3; PSL3; signal peptide peptidase beta; Spp
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392152,511,292 - 152,550,590 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2152,511,381 - 152,550,590 (+)EnsemblGRCm39 Ensembl
GRCm382152,669,422 - 152,708,668 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2152,669,461 - 152,708,670 (+)EnsemblGRCm38mm10GRCm38
MGSCv372152,495,197 - 152,534,404 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362152,360,940 - 152,398,265 (+)NCBIMGSCv36mm8
Celera2158,485,404 - 158,524,533 (+)NCBICelera
Cytogenetic Map2H1NCBI
cM Map275.41NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dimethylhydrazine  (EXP)
17beta-estradiol  (ISO)
17beta-hydroxy-5alpha-androstan-3-one  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
3,4-methylenedioxymethamphetamine  (EXP)
3-chloropropane-1,2-diol  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4,4'-diaminodiphenylmethane  (EXP)
4,4'-sulfonyldiphenol  (ISO)
5-fluorouracil  (ISO)
acrylamide  (ISO)
aflatoxin B1  (EXP,ISO)
arsenous acid  (ISO)
atrazine  (ISO)
benzo[a]pyrene  (EXP,ISO)
benzo[b]fluoranthene  (EXP)
benzo[e]pyrene  (ISO)
bisphenol A  (ISO)
Bisphenol B  (ISO)
bisphenol F  (ISO)
cadmium dichloride  (ISO)
carbon nanotube  (EXP)
chlorpyrifos  (EXP)
chrysene  (EXP)
clofibrate  (EXP)
clofibric acid  (ISO)
cobalt dichloride  (ISO)
cyclophosphamide  (EXP)
cyclosporin A  (EXP,ISO)
decabromodiphenyl ether  (ISO)
dexamethasone  (ISO)
diarsenic trioxide  (ISO)
diethylstilbestrol  (ISO)
diuron  (ISO)
endosulfan  (ISO)
epoxiconazole  (EXP)
fenthion  (EXP)
folic acid  (EXP)
FR900359  (ISO)
genistein  (ISO)
glafenine  (ISO)
glyphosate  (ISO)
indometacin  (ISO)
ivermectin  (ISO)
leflunomide  (ISO)
methapyrilene  (ISO)
methidathion  (EXP)
N-nitrosodiethylamine  (ISO)
nickel atom  (ISO)
ozone  (ISO)
paracetamol  (ISO)
paraquat  (EXP)
phenobarbital  (EXP)
pirinixic acid  (EXP,ISO)
resveratrol  (EXP)
SB 431542  (ISO)
silicon dioxide  (ISO)
silver atom  (EXP)
silver(0)  (EXP)
sodium arsenite  (ISO)
Soman  (ISO)
sulindac sulfide  (ISO)
testosterone  (EXP)
tetraphene  (EXP)
thapsigargin  (ISO)
theophylline  (ISO)
thioacetamide  (ISO)
titanium dioxide  (EXP)
trichloroethene  (ISO)
triphenyl phosphate  (ISO)
triptonide  (EXP)
tunicamycin  (ISO)
valproic acid  (ISO)

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
abnormal azygos vein topology  (IEA)
abnormal brachial plexus formation  (IEA)
abnormal brain internal capsule morphology  (IEA)
abnormal brain morphology  (IEA)
abnormal cervical atlas morphology  (IEA)
abnormal chorion morphology  (IAGP)
abnormal ductus venosus valve morphology  (IEA)
abnormal eye muscle morphology  (IEA)
abnormal forebrain development  (IEA)
abnormal forebrain morphology  (IEA)
abnormal hepatic vein morphology  (IEA)
abnormal hindbrain morphology  (IEA)
abnormal hypoglossal canal morphology  (IEA)
abnormal hypoglossal nerve topology  (IEA)
abnormal inferior vena cava valve morphology  (IEA)
abnormal infrahyoid muscle connection  (IEA)
abnormal infrahyoid muscle morphology  (IEA)
abnormal interatrial septum morphology  (IEA)
abnormal intestine placement  (IEA)
abnormal liver vasculature morphology  (IEA)
abnormal Mullerian duct morphology  (IEA)
abnormal nervous system morphology  (IEA)
abnormal olfactory bulb morphology  (IEA)
abnormal optic chiasm morphology  (IEA)
abnormal optic cup morphology  (IEA)
abnormal optic stalk morphology  (IEA)
abnormal outer ear morphology  (IEA)
abnormal pancreas topology  (IEA)
abnormal placenta morphology  (IAGP)
abnormal placental labyrinth vasculature morphology  (IAGP)
abnormal posterior semicircular canal morphology  (IEA)
abnormal pulmonary valve cusp morphology  (IEA)
abnormal rib morphology  (IEA)
abnormal snout morphology  (IEA)
abnormal stapedial artery morphology  (IEA)
abnormal stapedial artery topology  (IEA)
abnormal styloid process morphology  (IEA)
abnormal tail morphology  (IEA)
abnormal thymus topology  (IEA)
abnormal trophoblast giant cell morphology  (IAGP)
abnormal trophoblast layer morphology  (IAGP)
abnormal umbilical vein topology  (IEA)
abnormal vertebrae morphology  (IEA)
abnormal vertebral arch morphology  (IEA)
abnormal vertebral artery origin  (IEA)
abnormal vitelline vein connection  (IEA)
abnormal vitelline vein topology  (IEA)
abnormal Wolffian duct morphology  (IEA)
absent celiac artery  (IEA)
absent ductus venosus valve  (IEA)
absent hypoglossal canal  (IEA)
absent hypoglossal nerve  (IEA)
absent inferior vena cava  (IEA)
absent kidney  (IEA)
absent Mullerian ducts  (IEA)
absent posterior communicating artery  (IEA)
absent ribs  (IEA)
absent segment of posterior cerebral artery  (IEA)
absent stapedial artery  (IEA)
absent superior cervical ganglion  (IEA)
blood in lymph vessels  (IEA)
decreased fasting circulating glucose level  (IEA)
decreased length of long bones  (IEA)
dilated liver sinusoidal space  (IEA)
double outlet right ventricle  (IEA)
embryo tumor  (IEA)
enlarged paraumbilical vein  (IEA)
exencephaly  (IEA)
fused dorsal root ganglion  (IEA)
heterochrony  (IEA)
increased bone mineral content  (IEA)
left pulmonary isomerism  (IEA)
multiple persisting craniopharyngeal ducts  (IEA)
muscular ventricular septal defect  (IEA)
perimembraneous ventricular septal defect  (IEA)
persistent dorsal ophthalmic artery  (IEA)
preweaning lethality, complete penetrance  (IAGP)
reduced sympathetic cervical ganglion size  (IEA)
retroesophageal right subclavian artery  (IEA)
situs inversus  (IEA)
small kidney  (IEA)
small placenta  (IAGP)
small superior cervical ganglion  (IEA)
small thyroid gland  (IEA)
subcutaneous edema  (IEA)
symmetric azygos veins  (IEA)
thin hypoglossal nerve  (IEA)
thoracoschisis  (IEA)
transposition of great arteries  (IEA)
References

References - curated
# Reference Title Reference Citation
1. TRC8-dependent degradation of hepatitis C virus immature core protein regulates viral propagation and pathogenesis. Aizawa S, etal., Nat Commun. 2016 May 4;7:11379. doi: 10.1038/ncomms11379.
2. Inhibitors of signal peptide peptidase (SPP) affect HSV-1 infectivity in vitro and in vivo. Allen SJ, etal., Exp Eye Res. 2014 Jun;123:8-15. doi: 10.1016/j.exer.2014.04.004. Epub 2014 Apr 24.
3. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
4. MGDs mouse GO annotations MGD data from the GO Consortium
5. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
6. Mouse MP Annotation Import Pipeline RGD automated import pipeline
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
8. Absence of Signal Peptide Peptidase, an Essential Herpes Simplex Virus 1 Glycoprotein K Binding Partner, Reduces Virus Infectivity In Vivo. Wang S and Ghiasi H, J Virol. 2019 Nov 13;93(23). pii: JVI.01309-19. doi: 10.1128/JVI.01309-19. Print 2019 Dec 1.
Additional References at PubMed
PMID:1999355   PMID:3301647   PMID:4130130   PMID:4390514   PMID:4930569   PMID:4937889   PMID:5338633   PMID:5340356   PMID:6034501   PMID:7514566   PMID:8206522   PMID:8889548  
PMID:9276742   PMID:9354467   PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11751972   PMID:12477932   PMID:12520002   PMID:12972007   PMID:14610273   PMID:15489334  
PMID:15699113   PMID:15782199   PMID:16141072   PMID:16141073   PMID:16730383   PMID:17291163   PMID:17967808   PMID:18451104   PMID:21267068   PMID:21302096   PMID:21677750   PMID:21873635  
PMID:24048903   PMID:24063864   PMID:27996060   PMID:28368372   PMID:28378742   PMID:29539633   PMID:30973865   PMID:31138677   PMID:32554809   PMID:32560809   PMID:35100323   PMID:36417873  
PMID:38355793  


Genomics

Comparative Map Data
H13
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392152,511,292 - 152,550,590 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2152,511,381 - 152,550,590 (+)EnsemblGRCm39 Ensembl
GRCm382152,669,422 - 152,708,668 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2152,669,461 - 152,708,670 (+)EnsemblGRCm38mm10GRCm38
MGSCv372152,495,197 - 152,534,404 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362152,360,940 - 152,398,265 (+)NCBIMGSCv36mm8
Celera2158,485,404 - 158,524,533 (+)NCBICelera
Cytogenetic Map2H1NCBI
cM Map275.41NCBI
HM13
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382031,514,442 - 31,569,543 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2031,514,428 - 31,577,923 (+)EnsemblGRCh38hg38GRCh38
GRCh372030,102,245 - 30,157,346 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362029,565,902 - 29,621,031 (+)NCBINCBI36Build 36hg18NCBI36
Build 342029,565,901 - 29,591,257NCBI
Celera2026,858,423 - 26,913,551 (+)NCBICelera
Cytogenetic Map20q11.21NCBI
HuRef2026,890,440 - 26,945,730 (+)NCBIHuRef
CHM1_12030,006,150 - 30,061,281 (+)NCBICHM1_1
T2T-CHM13v2.02033,238,668 - 33,293,768 (+)NCBIT2T-CHM13v2.0
Hm13
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83161,606,059 - 161,641,382 (+)NCBIGRCr8
mRatBN7.23141,145,792 - 141,183,557 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3141,145,782 - 141,184,703 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3145,050,767 - 145,086,080 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03153,634,606 - 153,669,917 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03151,375,215 - 151,410,387 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03148,150,695 - 148,189,623 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3148,150,698 - 148,189,623 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03154,555,170 - 154,594,098 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43143,020,648 - 143,059,566 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.13142,892,504 - 142,961,304 (+)NCBI
Celera3139,895,459 - 139,934,248 (+)NCBICelera
Cytogenetic Map3q41NCBI
Hm13
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542229,362,724 - 29,408,840 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542229,365,722 - 29,408,788 (-)NCBIChiLan1.0ChiLan1.0
HM13
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22137,205,681 - 37,262,331 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12037,198,811 - 37,255,442 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02027,803,597 - 27,859,384 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12028,441,297 - 28,499,344 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2028,441,285 - 28,501,001 (+)Ensemblpanpan1.1panPan2
HM13
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12421,026,851 - 21,067,773 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2421,026,366 - 21,071,165 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2420,674,903 - 20,715,412 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02421,713,695 - 21,754,672 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2421,713,704 - 21,754,672 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12420,992,044 - 21,032,813 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02421,097,128 - 21,137,662 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02421,527,475 - 21,567,990 (+)NCBIUU_Cfam_GSD_1.0
Hm13
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640170,108,510 - 170,152,239 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648518,539,826 - 18,583,813 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648518,539,873 - 18,583,605 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
HM13
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1735,248,570 - 35,288,539 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11735,248,575 - 35,288,431 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21740,078,434 - 40,117,783 (-)NCBISscrofa10.2Sscrofa10.2susScr3
HM13
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1235,925,316 - 35,975,209 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl235,925,290 - 35,977,982 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605090,980,941 - 91,032,531 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Hm13
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624741921,023 - 977,703 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624741924,040 - 977,646 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in H13
1178 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:2152
Count of miRNA genes:776
Interacting mature miRNAs:1012
Transcripts:ENSMUST00000079247, ENSMUST00000089059, ENSMUST00000109825, ENSMUST00000125366, ENSMUST00000129439, ENSMUST00000148156
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301907Rends_mrenal disease susceptibility (mouse)Not determined2135699221169699361Mouse
1301783Bhr1_mbronchial hyperresponsiveness 1 (mouse)Not determined2142593476178442452Mouse
12790983Bwq12_mbody weight QTL 12 (mouse)2148238204181755017Mouse
1301019Bmd6_mbone mineral density 6 (mouse)Not determined2151778297181755017Mouse
12910799Pwgrq2_mpre-weaning growth rate QTL 2 (mouse)2118589253160611165Mouse
1558939Gnf1_mgrowth and fatness 1 (mouse)Not determined2143773445169117924Mouse
13825247Agoc2_magouti coat color QTL 2 (mouse)2151841920159841920Mouse
12910795Pwbwq5_mpost-weaning body weight QTL 5 (mouse)2118589253160611165Mouse
1300867Lore2_mloss of righting induced by ethanol 2 (mouse)Not determined2144515861180896594Mouse
1558917Gct8_mgranulosa cell tumorigenesis 8 (mouse)Not determined2149236907181755017Mouse
27226761Feml18_mfemur length 18, 16 week (mouse)294230345154241920Mouse
12910812Pwgrq1_mpre-weaning growth rate QTL 1 (mouse)2118589253160611165Mouse
12910814Pwbwq1_mpre-weaning body weight QTL 1 (mouse)2118589253160611165Mouse
14747002Mancz3_mmandible centroid size 3 (mouse)2152329820181755017Mouse
1300751Bdt1_mbone density traits 1 (mouse)Not determined2149988902181755017Mouse
10045885Cplaq15_mcircadian period of locomotor activity 15 (mouse)Not determined2110916118154354667Mouse
10054066Bwq9_mbody weight QTL 9 (mouse)Not determined2135699221169699361Mouse
1301822Pgia2_mproteoglycan induced arthritis 2 (mouse)Not determined2123937311157937424Mouse
10043956Gnf5_mgrowth and fatness 5 (mouse)Not determined2135699221169699361Mouse
1558842Tailq2_mtail length QTL 2 (mouse)Not determined2151640941162737074Mouse
5491197Mobq5_mmultigenic obesity QTL 5 (mouse)Not determined265269746162518926Mouse
10412080Hylaq2_mHyperlocomotor activity related QTL 2 (mouse)Not determined2151640941164119146Mouse
5491196Mobq6_mmultigenic obesity QTL 6 (mouse)Not determined285724269180896594Mouse
1357862Epfq1_mepididymal fat pad weight QTL 1 (mouse)Not determined2151640941162737074Mouse
1301031Bdln3_mbody length 3 (mouse)Not determined2127664019161664118Mouse
11341717Rvfs1_mRift Valley fever susceptibility 1 (mouse)2135432544173449616Mouse
4141703Chlq13_mcirculating hormone level QTL 13 (mouse)Not determined2135699221169699361Mouse
1357484Bsbob_mBSB obesity (mouse)Not determined2143773445165665019Mouse
27226788Feml13_mfemur length 13, 10 week (mouse)2102630345159941920Mouse
4142211Nilac3_mnicotine induced locomotor activity 3 (mouse)Not determined2148664893181755017Mouse
1301294Hrtfm5_mheart failure modifier 5 (mouse)Not determined2122883015156883131Mouse
11038701Ltpr2e_mLeishmania tropica response 2e (mouse)2150212221181755017Mouse
11038702Ltpr2_mLeishmania tropica response 2 (mouse)2103095716167212356Mouse
4142450Lmr16_mleishmaniasis resistance 16 (mouse)Not determined2150212221181755017Mouse
1301085Lrnx10_mlearning-contextual 10 (mouse)Not determined2150212221181755017Mouse
11353826Bdln10_mbody length 10 (mouse)2140441482174441482Mouse
1300806Aod4_mautoimmune ovarian dysgenesis 4 (mouse)Not determined2145228719179228841Mouse
4141033Wg2d_mweight gain in high growth mice 2d (mouse)Not determined143773445160303008Mouse
1357772Scfq1_msubcutaneous fat pad weight QTL 1 (mouse)Not determined2151640941162737074Mouse
1301961Bts1_mbladder tumor susceptibility 1 (mouse)Not determined2132024159166024330Mouse
1301618Bglu1_mblood glucose level 1 (mouse)Not determined2117942930174324863Mouse
27226749Femd10_mfemur midshaft diameter 10, 16 week (mouse)2124441920168241920Mouse
1302143Bwq5_mbody weight (mouse)Not determined2127664019161664118Mouse
1302013Tbbmd3_mtotal body bone mineral density 3 (mouse)Not determined2145196949179197085Mouse
12880427V25Dq3_mvitamin D inactive form serum level QTL 3 (mouse)2129341920163341920Mouse
13504830Bacsq1_mbaculum shape QTL 1 (mouse)2145716184161016184Mouse
12801456Intmrm1_mintima/media ratio modifier 1 (mouse)2142428347176428450Mouse
11049566Lmr28e_mleishmaniasis resistance 28e (mouse)2133144911167145058Mouse
12801461Intim1_mintima modifier 1 (mouse)2142428347176428450Mouse
11049567Lmr28f_mleishmaniasis resistance 28f (mouse)2133144911167145058Mouse
1301865Hdlq19_mHDL QTL 19 (mouse)Not determined2145518775179518926Mouse
12910520Scgq3_mspontaneous crescentic glomerulonephritis QTL 3 (mouse)2151709273174389124Mouse
1300846Pbwg11_mpostnatal body weight growth 11 (mouse)Not determined2138966600172966729Mouse

Markers in Region
AV020344  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm382152,683,187 - 152,683,306UniSTSGRCm38
MGSCv372152,508,923 - 152,509,042UniSTSGRCm37
Celera2158,499,059 - 158,499,178UniSTS
Cytogenetic Map2H1UniSTS
cM Map286.0UniSTS
Whitehead/MRC_RH21789.65UniSTS
RH135106  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm382152,704,691 - 152,704,887UniSTSGRCm38
MGSCv372152,530,427 - 152,530,623UniSTSGRCm37
Celera2158,520,577 - 158,520,773UniSTS
Cytogenetic Map2H1UniSTS
cM Map286.0UniSTS
H13  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm382152,704,883 - 152,705,044UniSTSGRCm38
MGSCv372152,530,619 - 152,530,780UniSTSGRCm37
Celera2158,520,769 - 158,520,930UniSTS
Cytogenetic Map2H1UniSTS
cM Map286.0UniSTS


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001159551 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001159552 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001159553 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_010376 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006498783 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017315666 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001780858 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_003950808 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_374416 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AF017785 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF483214 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF483216 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF515662 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ345032 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK004690 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK007664 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK012600 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK013891 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK015372 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK019877 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK028109 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK039008 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK049101 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK050664 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK051151 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK077983 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK080966 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK131644 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK159176 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK169922 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK171790 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK180838 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK186920 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK216222 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK216463 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK216987 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL845162 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC034217 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC045195 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC056977 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CA321999 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466551 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DQ168449 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DQ542275 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000079247   ⟹   ENSMUSP00000078236
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2152,511,454 - 152,546,048 (+)Ensembl
GRCm38.p6 Ensembl2152,669,534 - 152,704,128 (+)Ensembl
Ensembl Acc Id: ENSMUST00000089059   ⟹   ENSMUSP00000086460
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2152,511,408 - 152,546,956 (+)Ensembl
GRCm38.p6 Ensembl2152,669,488 - 152,705,036 (+)Ensembl
Ensembl Acc Id: ENSMUST00000109825   ⟹   ENSMUSP00000105450
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2152,511,408 - 152,528,621 (+)Ensembl
GRCm38.p6 Ensembl2152,669,488 - 152,686,701 (+)Ensembl
Ensembl Acc Id: ENSMUST00000125366   ⟹   ENSMUSP00000120068
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2152,511,381 - 152,550,590 (+)Ensembl
GRCm38.p6 Ensembl2152,669,461 - 152,708,670 (+)Ensembl
Ensembl Acc Id: ENSMUST00000129439
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2152,533,759 - 152,538,161 (+)Ensembl
GRCm38.p6 Ensembl2152,691,839 - 152,696,241 (+)Ensembl
Ensembl Acc Id: ENSMUST00000148156
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2152,511,406 - 152,525,361 (+)Ensembl
GRCm38.p6 Ensembl2152,669,486 - 152,683,441 (+)Ensembl
RefSeq Acc Id: NM_001159551   ⟹   NP_001153023
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392152,511,400 - 152,550,590 (+)NCBI
GRCm382152,669,461 - 152,708,668 (+)NCBI
MGSCv372152,495,197 - 152,534,404 (+)RGD
Celera2158,485,404 - 158,524,533 (+)RGD
cM Map2 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001159552   ⟹   NP_001153024
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392152,511,400 - 152,528,633 (+)NCBI
GRCm382152,669,461 - 152,686,708 (+)NCBI
MGSCv372152,495,197 - 152,534,404 (+)RGD
Celera2158,485,404 - 158,524,533 (+)RGD
cM Map2 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001159553   ⟹   NP_001153025
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392152,511,400 - 152,527,092 (+)NCBI
GRCm382152,669,461 - 152,685,146 (+)NCBI
MGSCv372152,495,197 - 152,534,404 (+)RGD
Celera2158,485,404 - 158,524,533 (+)RGD
cM Map2 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_010376   ⟹   NP_034506
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392152,511,400 - 152,550,590 (+)NCBI
GRCm382152,669,461 - 152,708,668 (+)NCBI
MGSCv372152,495,197 - 152,534,404 (+)RGD
Celera2158,485,404 - 158,524,533 (+)RGD
cM Map2 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006498783   ⟹   XP_006498846
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392152,511,292 - 152,546,972 (+)NCBI
GRCm382152,669,422 - 152,705,052 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017315666   ⟹   XP_017171155
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392152,511,337 - 152,546,972 (+)NCBI
GRCm382152,669,422 - 152,705,052 (+)NCBI
Sequence:
RefSeq Acc Id: XR_001780858
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392152,511,292 - 152,546,972 (+)NCBI
GRCm382152,669,422 - 152,705,052 (+)NCBI
Sequence:
RefSeq Acc Id: XR_003950808
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392152,511,292 - 152,529,782 (+)NCBI
GRCm382152,669,422 - 152,687,862 (+)NCBI
Sequence:
RefSeq Acc Id: XR_374416
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392152,511,292 - 152,546,972 (+)NCBI
GRCm382152,669,422 - 152,705,052 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001153023 (Get FASTA)   NCBI Sequence Viewer  
  NP_001153024 (Get FASTA)   NCBI Sequence Viewer  
  NP_001153025 (Get FASTA)   NCBI Sequence Viewer  
  NP_034506 (Get FASTA)   NCBI Sequence Viewer  
  XP_006498846 (Get FASTA)   NCBI Sequence Viewer  
  XP_017171155 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAB81863 (Get FASTA)   NCBI Sequence Viewer  
  AAH45195 (Get FASTA)   NCBI Sequence Viewer  
  AAH56977 (Get FASTA)   NCBI Sequence Viewer  
  AAM22075 (Get FASTA)   NCBI Sequence Viewer  
  AAM22077 (Get FASTA)   NCBI Sequence Viewer  
  AAN77098 (Get FASTA)   NCBI Sequence Viewer  
  ABA56162 (Get FASTA)   NCBI Sequence Viewer  
  BAB23476 (Get FASTA)   NCBI Sequence Viewer  
  BAB25172 (Get FASTA)   NCBI Sequence Viewer  
  BAB31897 (Get FASTA)   NCBI Sequence Viewer  
  BAC25752 (Get FASTA)   NCBI Sequence Viewer  
  BAC30202 (Get FASTA)   NCBI Sequence Viewer  
  BAC33543 (Get FASTA)   NCBI Sequence Viewer  
  BAC34369 (Get FASTA)   NCBI Sequence Viewer  
  BAC38098 (Get FASTA)   NCBI Sequence Viewer  
  BAE34875 (Get FASTA)   NCBI Sequence Viewer  
  BAE41461 (Get FASTA)   NCBI Sequence Viewer  
  CAC87793 (Get FASTA)   NCBI Sequence Viewer  
  EDL05980 (Get FASTA)   NCBI Sequence Viewer  
  EDL05981 (Get FASTA)   NCBI Sequence Viewer  
  EDL05982 (Get FASTA)   NCBI Sequence Viewer  
  EDL05983 (Get FASTA)   NCBI Sequence Viewer  
  EDL05984 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000078236
  ENSMUSP00000078236.4
  ENSMUSP00000086460
  ENSMUSP00000086460.3
  ENSMUSP00000105450
  ENSMUSP00000105450.2
  ENSMUSP00000120068
  ENSMUSP00000120068.2
GenBank Protein Q9D8V0 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_034506   ⟸   NM_010376
- Peptide Label: isoform 2
- UniProtKB: Q9CQA4 (UniProtKB/Swiss-Prot),   Q8HWB5 (UniProtKB/Swiss-Prot),   Q8HWA9 (UniProtKB/Swiss-Prot),   Q811Z6 (UniProtKB/Swiss-Prot),   Q542R3 (UniProtKB/Swiss-Prot),   Q3TXP0 (UniProtKB/Swiss-Prot),   Q15K37 (UniProtKB/Swiss-Prot),   O19444 (UniProtKB/Swiss-Prot),   A3KGS1 (UniProtKB/Swiss-Prot),   Q9CSK9 (UniProtKB/Swiss-Prot),   Q9D8V0 (UniProtKB/Swiss-Prot),   A3KGR9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001153023   ⟸   NM_001159551
- Peptide Label: isoform 1
- UniProtKB: A3KGR9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001153024   ⟸   NM_001159552
- Peptide Label: isoform 3
- UniProtKB: Q6PGJ8 (UniProtKB/TrEMBL),   Q8HWB1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001153025   ⟸   NM_001159553
- Peptide Label: isoform 4
- UniProtKB: Q9D8V0 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006498846   ⟸   XM_006498783
- Peptide Label: isoform X2
- UniProtKB: A3KGR9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017171155   ⟸   XM_017315666
- Peptide Label: isoform X1
- Sequence:
Ensembl Acc Id: ENSMUSP00000120068   ⟸   ENSMUST00000125366
Ensembl Acc Id: ENSMUSP00000078236   ⟸   ENSMUST00000079247
Ensembl Acc Id: ENSMUSP00000086460   ⟸   ENSMUST00000089059
Ensembl Acc Id: ENSMUSP00000105450   ⟸   ENSMUST00000109825

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9D8V0-F1-model_v2 AlphaFold Q9D8V0 1-378 view protein structure

Promoters
RGD ID:6831565
Promoter ID:MM_KWN:32384
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000109826,   ENSMUST00000109828,   NM_001159551,   NM_001159553,   OTTMUST00000037622,   OTTMUST00000037624,   UC008NGA.1,   UC008NGD.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv362152,495,181 - 152,495,692 (+)MPROMDB
RGD ID:6847660
Promoter ID:MM_ACW:30108
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell
Transcripts:H13.HSEP07,   H13.MSEP07-UNSPLICED
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv362152,514,209 - 152,514,709 (+)MPROMDB
RGD ID:6831566
Promoter ID:MM_KWN:32386
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_2Hour,   BoneMarrow_4Hour,   Lung,   MEF_B4,   MEF_B6
Transcripts:OTTMUST00000037625
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv362152,517,086 - 152,517,987 (+)MPROMDB
RGD ID:6847657
Promoter ID:MM_ACW:30113
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   BoneMarrow_2Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6
Transcripts:H13.JSEP07-UNSPLICED
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv362152,529,741 - 152,533,737 (+)MPROMDB
RGD ID:6879212
Promoter ID:EPDNEW_M3057
Type:initiation region
Name:H13_1
Description:Mus musculus histocompatibility 13 , transcript variant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm382152,669,488 - 152,669,548EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:95886 AgrOrtholog
Ensembl Genes ENSMUSG00000019188 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000079247 ENTREZGENE
  ENSMUST00000079247.4 UniProtKB/TrEMBL
  ENSMUST00000089059 ENTREZGENE
  ENSMUST00000089059.9 UniProtKB/Swiss-Prot
  ENSMUST00000109825 ENTREZGENE
  ENSMUST00000109825.8 UniProtKB/TrEMBL
  ENSMUST00000125366 ENTREZGENE
  ENSMUST00000125366.8 UniProtKB/Swiss-Prot
Gene3D-CATH 1.10.472.100 UniProtKB/TrEMBL
InterPro Peptidase_A22B_SPP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Preselin/SPP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Presenilin_C UniProtKB/TrEMBL
KEGG Report mmu:14950 UniProtKB/Swiss-Prot
MGD MGI:95886 ENTREZGENE
NCBI Gene 14950 ENTREZGENE
PANTHER MINOR HISTOCOMPATIBILITY ANTIGEN H13 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR12174 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Peptidase_A22B UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen H13 PhenoGen
SMART PSN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A3KGR9 ENTREZGENE, UniProtKB/TrEMBL
  A3KGS1 ENTREZGENE
  HM13_MOUSE UniProtKB/Swiss-Prot
  O19444 ENTREZGENE
  Q15K37 ENTREZGENE
  Q3TXP0 ENTREZGENE
  Q542R3 ENTREZGENE
  Q6PGJ8 ENTREZGENE, UniProtKB/TrEMBL
  Q811Z6 ENTREZGENE
  Q861Q5_MOUSE UniProtKB/TrEMBL
  Q8HWA9 ENTREZGENE
  Q8HWB1 ENTREZGENE, UniProtKB/TrEMBL
  Q8HWB5 ENTREZGENE
  Q9CQA4 ENTREZGENE
  Q9CSK9 ENTREZGENE
  Q9D8V0 ENTREZGENE
UniProt Secondary A3KGS1 UniProtKB/Swiss-Prot
  O19444 UniProtKB/Swiss-Prot
  Q15K37 UniProtKB/Swiss-Prot
  Q3TXP0 UniProtKB/Swiss-Prot
  Q542R3 UniProtKB/Swiss-Prot
  Q811Z6 UniProtKB/Swiss-Prot
  Q8HWA9 UniProtKB/Swiss-Prot
  Q8HWB5 UniProtKB/Swiss-Prot
  Q9CQA4 UniProtKB/Swiss-Prot
  Q9CSK9 UniProtKB/Swiss-Prot