Ift27 (intraflagellar transport 27) - Rat Genome Database

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Gene: Ift27 (intraflagellar transport 27) Mus musculus
Analyze
Symbol: Ift27
Name: intraflagellar transport 27
RGD ID: 1318629
MGI Page MGI
Description: Predicted to enable GTP binding activity and GTPase activity. Involved in several processes, including intraciliary transport; smoothened signaling pathway; and spermatogenesis. Acts upstream of or within cochlea development and inner ear receptor cell stereocilium organization. Located in several cellular components, including centrosome; nucleus; and sperm flagellum. Part of intraciliary transport particle B. Is expressed in several structures, including secondary heart field; skin; and yolk sac mesenchyme. Human ortholog(s) of this gene implicated in Bardet-Biedl syndrome 19. Orthologous to human IFT27 (intraflagellar transport 27).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 2600013G09Rik; intraflagellar transport 27 homolog; intraflagellar transport protein 27 homolog; putative GTP-binding protein RAY-like; Ra; RAB, member of RAS oncogene family-like 4; rab-like protein 4; Rabl4
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391578,043,660 - 78,058,281 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1578,043,663 - 78,058,307 (-)EnsemblGRCm39 Ensembl
GRCm381578,159,460 - 78,174,081 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1578,159,463 - 78,174,107 (-)EnsemblGRCm38mm10GRCm38
MGSCv371577,989,893 - 78,004,538 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361577,986,718 - 78,001,363 (-)NCBIMGSCv36mm8
Celera1579,620,378 - 79,635,028 (-)NCBICelera
Cytogenetic Map15E1NCBI
cM Map1536.92NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function
GTP binding  (IBA,IEA)
GTPase activity  (IBA,IEA)
protein binding  (IPI)

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
abdominal situs ambiguus  (IAGP)
abnormal aortic arch morphology  (IAGP)
abnormal atrioventricular cushion morphology  (IAGP)
abnormal blood vessel morphology  (IAGP)
abnormal hair follicle development  (IAGP)
abnormal incisor morphology  (IAGP)
abnormal jaw morphology  (IAGP)
abnormal keratinocyte differentiation  (IAGP)
abnormal limb morphology  (IAGP)
abnormal lung morphology  (IAGP)
abnormal lung position or orientation  (IAGP)
abnormal mouth morphology  (IAGP)
abnormal nasal septum morphology  (IAGP)
abnormal nose morphology  (IAGP)
abnormal outer dense fiber morphology  (IAGP)
abnormal palate morphology  (IAGP)
abnormal plasma membrane morphology  (IAGP)
abnormal rib morphology  (IAGP)
abnormal sperm axoneme morphology  (IAGP)
abnormal sperm end piece morphology  (IAGP)
abnormal sperm fibrous sheath morphology  (IAGP)
abnormal sperm flagellum morphology  (IAGP)
abnormal sperm flagellum thickness  (IAGP)
abnormal sperm head morphology  (IAGP)
abnormal spermatogenesis  (IAGP)
abnormal spermiation  (IAGP)
abnormal testis physiology  (IAGP)
abnormal tongue morphology  (IAGP)
abnormal trachea morphology  (IAGP)
abnormal vomeronasal organ morphology  (IAGP)
absent hair follicles  (IAGP)
absent tongue  (IAGP)
arrest of spermiogenesis  (IAGP)
asthenozoospermia  (IAGP)
common atrium  (IAGP)
cyanosis  (IAGP)
decreased keratinocyte proliferation  (IAGP)
decreased sperm progressive motility  (IAGP)
decreased tongue size  (IAGP)
disorganized sperm mitochondrial sheath  (IAGP)
double aortic arch  (IAGP)
double outlet right ventricle with atrioventricular septal defect  (IAGP)
dual inferior vena cava  (IAGP)
globozoospermia  (IAGP)
immotile sperm  (IAGP)
kinked sperm flagellum  (IAGP)
lung cyst  (IAGP)
male infertility  (IAGP)
micrognathia  (IAGP)
midface hypoplasia  (IAGP)
misaligned sternebrae  (IAGP)
neonatal lethality, complete penetrance  (IAGP)
ocular hypotelorism  (IAGP)
oligozoospermia  (IAGP)
omphalocele  (IAGP)
perinatal lethality, incomplete penetrance  (IAGP)
pulmonary trunk hypoplasia  (IAGP)
short sperm flagellum  (IAGP)
small hair follicles  (IAGP)
small mandible  (IAGP)
teratozoospermia  (IAGP)
umbilical hernia  (IAGP)
underdeveloped hair follicles  (IAGP)
References

References - curated
# Reference Title Reference Citation
1. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
3. MGDs mouse GO annotations MGD data from the GO Consortium
4. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
5. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
6. Mouse MP Annotation Import Pipeline RGD automated import pipeline
7. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
8. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
9. Database resources of the National Center for Biotechnology Information. Wheeler DL, etal., Nucleic Acids Res 2001 Jan 1;29(1):11-6.
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:12477932   PMID:15489334   PMID:16141072   PMID:16141073   PMID:19253336   PMID:21677750   PMID:21873635  
PMID:23055941   PMID:23810713   PMID:24586199   PMID:24596149   PMID:25443296   PMID:25446516   PMID:25605782   PMID:26023097   PMID:26585297   PMID:26980730   PMID:27231153   PMID:27340223  
PMID:28264835   PMID:28430876   PMID:28964737   PMID:29626631   PMID:34023333  


Genomics

Comparative Map Data
Ift27
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391578,043,660 - 78,058,281 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1578,043,663 - 78,058,307 (-)EnsemblGRCm39 Ensembl
GRCm381578,159,460 - 78,174,081 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1578,159,463 - 78,174,107 (-)EnsemblGRCm38mm10GRCm38
MGSCv371577,989,893 - 78,004,538 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361577,986,718 - 78,001,363 (-)NCBIMGSCv36mm8
Celera1579,620,378 - 79,635,028 (-)NCBICelera
Cytogenetic Map15E1NCBI
cM Map1536.92NCBI
IFT27
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382236,758,211 - 36,776,119 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2236,758,202 - 36,776,256 (-)EnsemblGRCh38hg38GRCh38
GRCh372237,154,255 - 37,172,163 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362235,484,201 - 35,502,060 (-)NCBINCBI36Build 36hg18NCBI36
Build 342235,478,754 - 35,496,614NCBI
Celera2220,952,197 - 20,970,124 (-)NCBICelera
Cytogenetic Map22q12.3NCBI
HuRef2220,116,610 - 20,134,536 (-)NCBIHuRef
CHM1_12237,108,544 - 37,126,471 (-)NCBICHM1_1
T2T-CHM13v2.02237,214,144 - 37,232,056 (-)NCBIT2T-CHM13v2.0
Ift27
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87111,619,145 - 111,635,129 (-)NCBIGRCr8
mRatBN7.27109,738,622 - 109,754,416 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7109,738,622 - 109,754,416 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx7111,488,556 - 111,504,329 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07113,712,118 - 113,727,891 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07113,680,286 - 113,696,077 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.07119,393,384 - 119,409,710 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7119,393,384 - 119,409,710 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07119,384,971 - 119,401,302 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47116,080,404 - 116,096,150 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.17116,114,639 - 116,148,320 (-)NCBI
Celera7106,078,487 - 106,094,278 (-)NCBICelera
Cytogenetic Map7q34NCBI
Ift27
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541323,295,185 - 23,310,802 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541323,295,549 - 23,310,824 (-)NCBIChiLan1.0ChiLan1.0
IFT27
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22346,612,311 - 46,630,281 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12249,303,586 - 49,321,553 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02217,672,602 - 17,690,568 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12235,509,349 - 35,527,132 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2235,509,449 - 35,519,079 (-)Ensemblpanpan1.1panPan2
IFT27
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11027,688,742 - 27,707,343 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1027,655,905 - 27,707,332 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1027,643,164 - 27,661,634 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01028,481,009 - 28,499,705 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1028,481,004 - 28,499,691 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11028,202,485 - 28,220,945 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01028,511,016 - 28,529,481 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01028,689,659 - 28,708,124 (+)NCBIUU_Cfam_GSD_1.0
Ift27
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494511,067,537 - 11,080,013 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364924,077,615 - 4,090,197 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364924,077,957 - 4,089,898 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
IFT27
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl510,994,215 - 11,017,950 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1510,994,182 - 11,015,476 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.258,594,333 - 8,616,173 (+)NCBISscrofa10.2Sscrofa10.2susScr3
IFT27
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11919,462,127 - 19,481,045 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1919,462,233 - 19,480,162 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666045106,385,146 - 106,405,368 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ift27
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475211,004,841 - 11,021,250 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475211,005,101 - 11,020,493 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Ift27
411 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:244
Count of miRNA genes:205
Interacting mature miRNAs:225
Transcripts:ENSMUST00000016781
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300627Sluc26_msusceptibility to lung cancer 26 (mouse)Not determined1570345653104073951Mouse
38501067Tip3_mtuberculosis immunophenotype 3, IFN-g level (mouse)155356339689584203Mouse
27226777Tibl8_mtibia length 8, 5 week (mouse)15692948184584201Mouse
15092079Igly6_mIgG glycosylation 6, GP6 (mouse)157410054082674156Mouse
1357703Vtbt17_mvertebral trabecular bone trait 17 (mouse)Not determined154455331378553437Mouse
4142252Tailaq4_mtail length adjusted QTL 4 (mouse)Not determined348969478601286Mouse
1558786Msq1_mMAV-1 susceptibility QTL 1 (mouse)Not determined156338964681086436Mouse
13504731Cath5_mcarotid atherosclerosis 5 (mouse)155478912988789129Mouse
15092080Igly7_mIgG glycosylation 7, GP10 (mouse)157779491982674156Mouse
12791003Aath8_maortic arch atherosclerosis 8 (mouse)1573430144104073951Mouse
1301006Hfib1_mhepatic fibrogenesis 1 (mouse)Not determined154730633481306479Mouse
27095936Ulnl4_mulna length 4, 5 week (mouse)155676339687684201Mouse
10755515Amzn3_manatomical modifier of Zfp423 3 (mouse)154638964680389845Mouse
1301171Brm2_mbrachyury modifier 2 (mouse)Not determined156552537699525499Mouse
1302197Bhr2_mbronchial hyperresponsiveness 2 (mouse)Not determined1564306334103425899Mouse
1301429Pcir3_mperiosteal circumference 3 (mouse)Not determined154846536282465496Mouse
1357756Alaa4_malopecia areata 4 (mouse)Not determined154638964680389845Mouse
26884402Cvht9_mcranial vault height 9, 16 week (mouse)154216339695497881Mouse
1302074Bmd4_mbone mineral density 4 (mouse)Not determined1556186708103425899Mouse
1301433Rapop5_mradiation-induced apoptosis 5 (mouse)Not determined15927302279474762Mouse
26884399Humsd1_mhumerus midshaft diameter 1, 5 week (mouse)1548363396101708435Mouse
26884397Humsd5_mhumerus midshaft diameter 5, 10 week (mouse)154836339698397881Mouse
1300648Dbsty4_mdiabesity 4 (mouse)Not determined1570349271104073951Mouse
10412067Pain2_mpain 2 (mouse)Not determined155164533985645626Mouse
4141952W3q7_mweight 3 weeks QTL 7 (mouse)Not determined348969478601286Mouse
26884442Sklq6_mskull length QTL 6, 5 week (mouse)156129481100797881Mouse
1357526Hyplip2_mhyperlipidemia 2 (mouse)Not determined1512402203102896555Mouse
27226717Tibw4_mtibia width 4, proximal, 10 week (mouse)15612948178684200Mouse
4142198Hbtq_mhabituation QTL (mouse)Not determined155116070885160833Mouse
1357407Pfat4_mpredicted fat percentage 4 (mouse)8.6Body fat amountpredicted fat percentage155711700591117153Mouse
1357659Epfpq4_mepididymal fat percentage QTL 4 (mouse)Not determined15348969478601286Mouse
4142448Tailq6_mtail length QTL 6 (mouse)Not determined348969478601286Mouse
1301568Tria2_mT-cell receptor induced activation 2 (mouse)Not determined154485914178859281Mouse
1302080Szs13_mseizure susceptibility 13 (mouse)Not determined155168583285694449Mouse
1300800Ses3_msalmonella enteritidis susceptibility 3 (mouse)Not determined155711700591117153Mouse
26884425Cvht2_mcranial vault height 2, 5 week (mouse)1528800146102008435Mouse
10045637Heal27_mwound healing/regeneration 29 (mouse)Not determined155141836185418511Mouse
1558985Eae32_mexperimental allergic encephalomyelitis susceptibility 32 (mouse)Not determined1532578416103425899Mouse
4141921Pstc3_mperiosteal circumference 3 (mouse)Not determined1567270698101270847Mouse
1301708Cocrb14_mcocaine related behavior 14 (mouse)Not determined155180651585806651Mouse
1300851Heal4_mwound healing/regeneration 4 (mouse)Not determined1577527592104073951Mouse
12880420V25Dq8_mvitamin D inactive form serum level QTL 8 (mouse)156158420095584200Mouse
1302002Cocia2_mcocaine induced activation 2 (mouse)Not determined157237245979899178Mouse
14747011Mancz13_mmandible centroid size 13 (mouse)1572382669104073951Mouse
1357559Scfq2_msubcutaneous fat pad weight QTL 2 (mouse)Not determined15348969478601286Mouse
1300726Pitm4_mprion incubation time 4 (mouse)Not determined1570349271104073951Mouse
1301119Drb7_mdopamine receptor binding 7 (mouse)Not determined156533657899341028Mouse
4141135Cia35_mcollagen induced arthritis 35 (mouse)Not determined156481182698811946Mouse
13442492Mecth2_mmechanosensation threshold 2 (mouse)157466284979387201Mouse
27226734Tibmd5_mtibia midshaft diameter 5, 10 week (mouse)15612948186684201Mouse
1301601Faq9_mfluctuating asymmetry QTL 9 (mouse)Not determined156316390397163995Mouse
1301472Pain1_mpain 1 (mouse)Not determined157532084690813185Mouse
27226729Tibmd2_mtibia midshaft diameter 2, 5 week (mouse)153800024486684201Mouse
1301860Gct3_mgranulosa cell tumorigenesis 3 (mouse)Not determined154740959681409691Mouse

Markers in Region
D15Let9  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381578,167,446 - 78,167,629UniSTSGRCm38
MGSCv371577,997,876 - 77,998,059UniSTSGRCm37
Celera1579,628,359 - 79,628,542UniSTS
Cytogenetic Map15E2UniSTS
cM Map15 UniSTS


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSMUST00000016781   ⟹   ENSMUSP00000016781
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1578,043,663 - 78,058,307 (-)Ensembl
GRCm38.p6 Ensembl1578,159,463 - 78,174,107 (-)Ensembl
Ensembl Acc Id: ENSMUST00000229417
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1578,051,461 - 78,052,483 (-)Ensembl
GRCm38.p6 Ensembl1578,167,261 - 78,168,283 (-)Ensembl
Ensembl Acc Id: ENSMUST00000229476   ⟹   ENSMUSP00000155736
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1578,049,371 - 78,056,668 (-)Ensembl
GRCm38.p6 Ensembl1578,165,171 - 78,172,468 (-)Ensembl
Ensembl Acc Id: ENSMUST00000230844   ⟹   ENSMUSP00000155127
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1578,043,663 - 78,057,673 (-)Ensembl
GRCm38.p6 Ensembl1578,159,463 - 78,173,473 (-)Ensembl
Ensembl Acc Id: ENSMUST00000231069
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1578,048,012 - 78,051,136 (-)Ensembl
GRCm38.p6 Ensembl1578,163,812 - 78,166,936 (-)Ensembl
RefSeq Acc Id: NM_025931   ⟹   NP_080207
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391578,043,660 - 78,058,281 (-)NCBI
GRCm381578,159,460 - 78,174,081 (-)NCBI
MGSCv371577,989,893 - 78,004,538 (-)RGD
Celera1579,620,378 - 79,635,028 (-)RGD
cM Map15 ENTREZGENE
Sequence:
Protein Sequences
Protein RefSeqs NP_080207 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH17514 (Get FASTA)   NCBI Sequence Viewer  
  EDL29663 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000016781
  ENSMUSP00000016781.7
  ENSMUSP00000155127.2
  ENSMUSP00000155736.2
GenBank Protein Q9D0P8 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_080207   ⟸   NM_025931
- UniProtKB: Q9D0P8 (UniProtKB/Swiss-Prot),   A0A2R8VHI2 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSMUSP00000155127   ⟸   ENSMUST00000230844
Ensembl Acc Id: ENSMUSP00000016781   ⟸   ENSMUST00000016781
Ensembl Acc Id: ENSMUSP00000155736   ⟸   ENSMUST00000229476

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9D0P8-F1-model_v2 AlphaFold Q9D0P8 1-186 view protein structure

Promoters
RGD ID:6826406
Promoter ID:MM_KWN:18968
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:NM_025931
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361578,004,341 - 78,005,017 (-)MPROMDB
RGD ID:8684236
Promoter ID:EPDNEW_M20148
Type:initiation region
Name:Ift27_2
Description:Mus musculus intraflagellar transport 27 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M20149  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381578,173,940 - 78,174,000EPDNEW
RGD ID:8684238
Promoter ID:EPDNEW_M20149
Type:initiation region
Name:Ift27_1
Description:Mus musculus intraflagellar transport 27 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M20148  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381578,174,060 - 78,174,120EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1914292 AgrOrtholog
Ensembl Genes ENSMUSG00000016637 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000016781 ENTREZGENE
  ENSMUST00000016781.8 UniProtKB/Swiss-Prot
  ENSMUST00000229476.2 UniProtKB/TrEMBL
  ENSMUST00000230844.2 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.300 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro P-loop_NTPase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Rab_GTPases_membrane_traffic UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Small_GTP-bd_dom UniProtKB/Swiss-Prot
  Small_GTPase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:67042 UniProtKB/Swiss-Prot
MGD MGI:1914292 ENTREZGENE
NCBI Gene 67042 ENTREZGENE
PANTHER DRAB11-RELATED UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  INTRAFLAGELLAR TRANSPORT PROTEIN 27 HOMOLOG UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Ras UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Ift27 PhenoGen
PRINTS RASTRNSFRMNG UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE RAB UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RAS UniProtKB/TrEMBL
SMART RAB UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RAS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RHO UniProtKB/Swiss-Prot
Superfamily-SCOP SSF52540 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A2R8VHI2 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R8VI57_MOUSE UniProtKB/TrEMBL
  IFT27_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2012-07-10 Ift27  intraflagellar transport 27  Ift27  intraflagellar transport 27 homolog (Chlamydomonas)  Symbol and/or name change 5135510 APPROVED
2011-07-27 Ift27  intraflagellar transport 27 homolog (Chlamydomonas)  Rabl4  RAB, member of RAS oncogene family-like 4  Symbol and/or name change 5135510 APPROVED