Atp11a (ATPase, class VI, type 11A) - Rat Genome Database

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Gene: Atp11a (ATPase, class VI, type 11A) Mus musculus
Analyze
Symbol: Atp11a
Name: ATPase, class VI, type 11A
RGD ID: 1318607
MGI Page MGI
Description: Predicted to enable phosphatidylethanolamine flippase activity and phosphatidylserine flippase activity. Involved in positive regulation of myotube differentiation. Acts upstream of or within in utero embryonic development. Predicted to be located in Golgi apparatus. Predicted to be part of phospholipid-translocating ATPase complex. Predicted to be active in endoplasmic reticulum; plasma membrane; and recycling endosome. Is expressed in several structures, including alimentary system; central nervous system; genitourinary system; lung; and sensory organ. Human ortholog(s) of this gene implicated in autosomal dominant nonsyndromic deafness. Orthologous to human ATP11A (ATPase phospholipid transporting 11A).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 4930558F19Rik; 9130422H11Rik; ATPase 11A, class VI; ATPase 11A, p type; ATPase class VI type 11A; ATPase, class 1, member h; Atpc1h; AU040868; I; Ih; P4-ATPase flippase complex alpha subunit ATP11A; phospholipid-transporting ATPase IH; probable phospholipid-transporting ATPase IH
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39812,807,016 - 12,918,728 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl812,807,014 - 12,918,728 (+)EnsemblGRCm39 Ensembl
GRCm38812,757,016 - 12,868,728 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl812,757,014 - 12,868,728 (+)EnsemblGRCm38mm10GRCm38
MGSCv37812,757,016 - 12,868,728 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36812,757,201 - 12,865,150 (+)NCBIMGSCv36mm8
Celera812,924,468 - 13,036,528 (+)NCBICelera
Cytogenetic Map8A1.1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dichloroethane  (EXP)
1,2-dimethylhydrazine  (EXP)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2-hydroxypropanoic acid  (ISO)
3-phenylprop-2-enal  (ISO)
4,4'-diaminodiphenylmethane  (EXP)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (EXP)
6-propyl-2-thiouracil  (ISO)
acrylamide  (ISO)
aflatoxin B1  (EXP,ISO)
all-trans-retinoic acid  (ISO)
ammonium chloride  (ISO)
antirheumatic drug  (ISO)
aristolochic acid A  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
benzo[e]pyrene  (ISO)
bisphenol A  (ISO)
bucladesine  (ISO)
carbon nanotube  (EXP)
cisplatin  (ISO)
copper atom  (EXP)
copper(0)  (EXP)
crocidolite asbestos  (EXP)
cyclosporin A  (ISO)
dichloroacetic acid  (EXP)
diclofenac  (EXP)
dicrotophos  (ISO)
doxorubicin  (ISO)
epoxiconazole  (EXP)
ethanol  (EXP)
finasteride  (ISO)
folic acid  (EXP)
fulvestrant  (ISO)
gentamycin  (ISO)
glafenine  (ISO)
hydrogen peroxide  (ISO)
ivermectin  (ISO)
lipopolysaccharide  (EXP)
medroxyprogesterone acetate  (ISO)
methapyrilene  (ISO)
methyl methanesulfonate  (ISO)
nefazodone  (ISO)
nickel sulfate  (ISO)
ozone  (EXP)
paracetamol  (ISO)
paraquat  (ISO)
pirinixic acid  (EXP)
rac-lactic acid  (ISO)
silicon dioxide  (EXP)
sodium arsenite  (EXP)
T-2 toxin  (ISO)
tetrachloromethane  (EXP)
tetracycline  (EXP)
tetraphene  (EXP)
titanium dioxide  (EXP)
tributylstannane  (EXP)
Triptolide  (ISO)
urethane  (ISO)
valproic acid  (ISO)
vinclozolin  (ISO)
vorinostat  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
abnormal adenohypophysis morphology  (IEA)
abnormal artery morphology  (IEA)
abnormal carotid artery morphology  (IEA)
abnormal coronary sinus connection  (IEA)
abnormal elbow joint morphology  (IEA)
abnormal eye morphology  (IEA)
abnormal eye muscle morphology  (IEA)
abnormal larynx morphology  (IEA)
abnormal Meckel's cartilage morphology  (IEA)
abnormal Mullerian duct morphology  (IEA)
abnormal myoblast differentiation  (IAGP)
abnormal nasal cavity morphology  (IEA)
abnormal olfactory bulb morphology  (IEA)
abnormal olfactory nerve morphology  (IEA)
abnormal optic cup morphology  (IEA)
abnormal optic stalk morphology  (IEA)
abnormal placental labyrinth vasculature morphology  (IAGP)
abnormal skeletal muscle regeneration  (IAGP)
abnormal thymus morphology  (IEA)
abnormal umbilical vein topology  (IEA)
abnormal vertebral artery morphology  (IEA)
abnormal vitelline vein topology  (IEA)
absent ductus venosus valve  (IEA)
absent olfactory nerve  (IEA)
absent pectinate muscle  (IEA)
additional anastomosis between intracranial vertebral arteries  (IEA)
aorta coarctation  (IEA)
aphakia  (IEA)
dilated liver sinusoidal space  (IEA)
exencephaly  (IEA)
herniated liver  (IEA)
heterochrony  (IEA)
increased rib number  (IEA)
increased trigeminal neuroma incidence  (IEA)
liver hypoplasia  (IEA)
multiple persisting craniopharyngeal ducts  (IEA)
muscular ventricular septal defect  (IAGP)
narrow eye opening  (IEA)
overriding aortic valve  (IEA)
perimembraneous ventricular septal defect  (IEA)
persistent trigeminal artery  (IEA)
placenta hemorrhage  (IAGP)
preweaning lethality, complete penetrance  (IAGP)
reduced sympathetic cervical ganglion size  (IEA)
small placenta  (IAGP)
small superior cervical ganglion  (IEA)
subcutaneous edema  (IEA)
thin myocardium compact layer  (IEA)
umbilical vein stenosis  (IEA)
References

References - curated
# Reference Title Reference Citation
1. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2. Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Ko MS, etal., Development 2000 Apr;127(8):1737-49.
3. MGDs mouse GO annotations MGD data from the GO Consortium
4. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
5. Mouse MP Annotation Import Pipeline RGD automated import pipeline
6. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10512203   PMID:10922068   PMID:11015572   PMID:11042159   PMID:11076861   PMID:11544199   PMID:11790799   PMID:12477932   PMID:15368895   PMID:15840001  
PMID:15860663   PMID:16141072   PMID:16141073   PMID:16602821   PMID:17983586   PMID:18799693   PMID:21267068   PMID:21677750   PMID:21873635   PMID:25312643   PMID:27996060   PMID:28185240  
PMID:29539633   PMID:29799007   PMID:30355768   PMID:34403372   PMID:35476530   PMID:36162506   PMID:36300302   PMID:36859534  


Genomics

Comparative Map Data
Atp11a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39812,807,016 - 12,918,728 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl812,807,014 - 12,918,728 (+)EnsemblGRCm39 Ensembl
GRCm38812,757,016 - 12,868,728 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl812,757,014 - 12,868,728 (+)EnsemblGRCm38mm10GRCm38
MGSCv37812,757,016 - 12,868,728 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36812,757,201 - 12,865,150 (+)NCBIMGSCv36mm8
Celera812,924,468 - 13,036,528 (+)NCBICelera
Cytogenetic Map8A1.1NCBI
ATP11A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3813112,690,038 - 112,887,168 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl13112,690,038 - 112,887,168 (+)EnsemblGRCh38hg38GRCh38
GRCh3713113,344,352 - 113,541,482 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3613112,392,644 - 112,589,483 (+)NCBINCBI36Build 36hg18NCBI36
Build 3413112,392,643 - 112,589,467NCBI
Celera1394,169,962 - 94,366,346 (+)NCBICelera
Cytogenetic Map13q34NCBI
HuRef1393,786,589 - 93,982,360 (+)NCBIHuRef
CHM1_113113,313,695 - 113,510,486 (+)NCBICHM1_1
T2T-CHM13v2.013111,938,073 - 112,137,143 (+)NCBIT2T-CHM13v2.0
Atp11a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21676,657,752 - 76,767,640 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1676,657,752 - 76,767,640 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1681,938,281 - 82,048,154 (-)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.01685,390,878 - 85,500,747 (-)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.01680,640,040 - 80,750,901 (-)NCBIRnor_WKY
Rnor_6.01681,990,340 - 82,100,222 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1681,990,340 - 82,100,222 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01681,476,069 - 81,586,090 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41681,514,979 - 81,624,861 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11681,501,632 - 81,609,375 (-)NCBI
Celera1674,464,012 - 74,573,797 (-)NCBICelera
Cytogenetic Map16q12.5NCBI
Atp11a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955404820,263 - 912,351 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955404820,788 - 906,531 (-)NCBIChiLan1.0ChiLan1.0
ATP11A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan113112,869,802 - 113,063,779 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01393,822,102 - 94,016,837 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.113112,999,645 - 113,096,015 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl13112,997,252 - 113,091,167 (+)Ensemblpanpan1.1panPan2
ATP11A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12260,302,098 - 60,431,070 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2260,302,309 - 60,428,080 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2260,015,066 - 60,143,830 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02260,929,759 - 61,058,315 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2260,929,048 - 61,056,821 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12260,428,554 - 60,555,405 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02260,424,306 - 60,552,852 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02260,458,948 - 60,587,815 (+)NCBIUU_Cfam_GSD_1.0
Atp11a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945195,201,759 - 195,286,188 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936472669,155 - 730,035 (-)EnsemblSpeTri2.0
SpeTri2.0NW_004936472665,967 - 750,396 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ATP11A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1178,293,469 - 78,402,083 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11178,292,734 - 78,402,108 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
ATP11A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1390,709,348 - 90,893,610 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl390,709,298 - 90,887,360 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604647,630,891 - 47,883,537 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Atp11a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624793903,847 - 998,436 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624793904,320 - 998,413 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Atp11a
3464 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:6051
Count of miRNA genes:970
Interacting mature miRNAs:1424
Transcripts:ENSMUST00000033818, ENSMUST00000091237, ENSMUST00000125031, ENSMUST00000127197, ENSMUST00000131804, ENSMUST00000132974, ENSMUST00000133338, ENSMUST00000136918, ENSMUST00000139545, ENSMUST00000143359, ENSMUST00000152273
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
13432571Scvg1_msubcutaneous vessel growth QTL 1 (mouse)8124751082Mouse
11533914Mts5_mmammary tumor susceptibility 5 (mouse)8130447432Mouse
4140978Nilac5_mnicotine induced locomotor activity 5 (mouse)Not determined8131773288Mouse
27226756Femd2_mfemur midshaft diameter 2, 5 week (mouse)8495000035067154Mouse
1357525Pnhdlc3_mplasma non-HDL cholesterol 3 (mouse)Not determined8721249923753815Mouse
1301532Scc8_mcolon tumor susceptibility 8 (mouse)Not determined8721249935110107Mouse
1300906Ap8q_malcohol preference 8 QTL (mouse)Not determined8798418941984342Mouse
10412209Cypr7_mcytokine production 7 (mouse)Not determined8810320142103372Mouse
1301929Eae24_msusceptibility to experimental allergic encephalomyelitis 24 (mouse)Not determined8810320142103372Mouse
1301128Sluc20_msusceptibility to lung cancer 20 (mouse)Not determined8810320142103372Mouse
14697703Stsl1_mSalmonella typhimurium susceptibility locus 1 (mouse)81135000017050016Mouse

Markers in Region
BE136256  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38812,862,048 - 12,862,127UniSTSGRCm38
MGSCv37812,862,048 - 12,862,127UniSTSGRCm37
Celera813,029,848 - 13,029,927UniSTS
Cytogenetic Map8A2UniSTS
Whitehead/MRC_RH8141.67UniSTS
AW146001  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38812,868,242 - 12,868,321UniSTSGRCm38
MGSCv37812,868,242 - 12,868,321UniSTSGRCm37
Celera813,036,042 - 13,036,121UniSTS
Cytogenetic Map8A2UniSTS
Whitehead/MRC_RH8141.04UniSTS
Atp11a  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map8A2UniSTS
cM Map8 UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001293667 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001293668 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_015804 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_121603 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006508834 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006508837 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006508839 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006508840 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011242067 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017312893 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004934860 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004934861 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC134581 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF156551 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK016173 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK028779 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK078972 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK147497 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK161916 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK164642 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK173088 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC027660 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC036322 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC040068 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC138715 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC145399 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC145400 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CF167530 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466566 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000033818   ⟹   ENSMUSP00000033818
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl812,807,014 - 12,918,728 (+)Ensembl
GRCm38.p6 Ensembl812,757,014 - 12,868,728 (+)Ensembl
RefSeq Acc Id: ENSMUST00000091237   ⟹   ENSMUSP00000088779
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl812,807,016 - 12,918,728 (+)Ensembl
GRCm38.p6 Ensembl812,757,016 - 12,868,728 (+)Ensembl
RefSeq Acc Id: ENSMUST00000125031
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl812,861,416 - 12,864,383 (+)Ensembl
GRCm38.p6 Ensembl812,811,416 - 12,814,383 (+)Ensembl
RefSeq Acc Id: ENSMUST00000127197
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl812,872,400 - 12,878,537 (+)Ensembl
GRCm38.p6 Ensembl812,822,400 - 12,828,537 (+)Ensembl
RefSeq Acc Id: ENSMUST00000131804   ⟹   ENSMUSP00000121567
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl812,907,962 - 12,912,202 (+)Ensembl
GRCm38.p6 Ensembl812,857,962 - 12,862,202 (+)Ensembl
RefSeq Acc Id: ENSMUST00000132974   ⟹   ENSMUSP00000117091
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl812,885,165 - 12,918,667 (+)Ensembl
GRCm38.p6 Ensembl812,835,165 - 12,868,667 (+)Ensembl
RefSeq Acc Id: ENSMUST00000133338   ⟹   ENSMUSP00000120625
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl812,807,069 - 12,909,720 (+)Ensembl
GRCm38.p6 Ensembl812,757,069 - 12,859,720 (+)Ensembl
RefSeq Acc Id: ENSMUST00000136918
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl812,899,841 - 12,901,724 (+)Ensembl
GRCm38.p6 Ensembl812,849,841 - 12,851,724 (+)Ensembl
RefSeq Acc Id: ENSMUST00000139545
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl812,911,565 - 12,915,570 (+)Ensembl
GRCm38.p6 Ensembl812,861,565 - 12,865,570 (+)Ensembl
RefSeq Acc Id: ENSMUST00000143359   ⟹   ENSMUSP00000114312
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl812,906,960 - 12,912,205 (+)Ensembl
GRCm38.p6 Ensembl812,856,960 - 12,862,205 (+)Ensembl
RefSeq Acc Id: ENSMUST00000152273   ⟹   ENSMUSP00000121989
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl812,897,855 - 12,907,270 (+)Ensembl
GRCm38.p6 Ensembl812,847,855 - 12,857,270 (+)Ensembl
RefSeq Acc Id: NM_001293667   ⟹   NP_001280596
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39812,807,016 - 12,918,728 (+)NCBI
GRCm38812,757,016 - 12,868,728 (+)NCBI
Celera812,924,468 - 13,036,528 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001293668   ⟹   NP_001280597
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39812,807,016 - 12,918,728 (+)NCBI
GRCm38812,757,016 - 12,868,728 (+)NCBI
Celera812,924,468 - 13,036,528 (+)NCBI
Sequence:
RefSeq Acc Id: NM_015804   ⟹   NP_056619
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39812,807,016 - 12,918,728 (+)NCBI
GRCm38812,757,016 - 12,868,728 (+)ENTREZGENE
MGSCv37812,757,016 - 12,868,728 (+)RGD
Celera812,924,468 - 13,036,528 (+)RGD
cM Map8 ENTREZGENE
Sequence:
RefSeq Acc Id: NR_121603
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39812,807,016 - 12,918,728 (+)NCBI
GRCm38812,757,016 - 12,868,728 (+)NCBI
Celera812,924,468 - 13,036,528 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006508834   ⟹   XP_006508897
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39812,807,260 - 12,918,728 (+)NCBI
GRCm38812,757,260 - 12,868,728 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006508837   ⟹   XP_006508900
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39812,807,260 - 12,918,728 (+)NCBI
GRCm38812,757,260 - 12,868,728 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006508839   ⟹   XP_006508902
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39812,807,260 - 12,918,728 (+)NCBI
GRCm38812,757,260 - 12,861,999 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006508840   ⟹   XP_006508903
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39812,807,260 - 12,906,927 (+)NCBI
GRCm38812,757,260 - 12,856,927 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011242067   ⟹   XP_011240369
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39812,807,260 - 12,918,728 (+)NCBI
GRCm38812,757,260 - 12,868,728 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017312893   ⟹   XP_017168382
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39812,807,260 - 12,913,844 (+)NCBI
GRCm38812,757,260 - 12,863,844 (+)NCBI
Sequence:
RefSeq Acc Id: XR_004934860
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39812,807,260 - 12,918,728 (+)NCBI
Sequence:
RefSeq Acc Id: XR_004934861
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39812,807,260 - 12,918,728 (+)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: NP_056619   ⟸   NM_015804
- Peptide Label: isoform 1
- UniProtKB: B2RS49 (UniProtKB/Swiss-Prot),   P98197 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006508897   ⟸   XM_006508834
- Peptide Label: isoform X1
- UniProtKB: E9Q3G7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006508900   ⟸   XM_006508837
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_006508902   ⟸   XM_006508839
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_006508903   ⟸   XM_006508840
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: NP_001280597   ⟸   NM_001293668
- Peptide Label: isoform 3
- Sequence:
RefSeq Acc Id: NP_001280596   ⟸   NM_001293667
- Peptide Label: isoform 2
- UniProtKB: E9Q3G7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011240369   ⟸   XM_011242067
- Peptide Label: isoform X1
- UniProtKB: E9Q3G7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017168382   ⟸   XM_017312893
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: ENSMUSP00000088779   ⟸   ENSMUST00000091237
RefSeq Acc Id: ENSMUSP00000114312   ⟸   ENSMUST00000143359
RefSeq Acc Id: ENSMUSP00000120625   ⟸   ENSMUST00000133338
RefSeq Acc Id: ENSMUSP00000117091   ⟸   ENSMUST00000132974
RefSeq Acc Id: ENSMUSP00000121989   ⟸   ENSMUST00000152273
RefSeq Acc Id: ENSMUSP00000033818   ⟸   ENSMUST00000033818
RefSeq Acc Id: ENSMUSP00000121567   ⟸   ENSMUST00000131804
Protein Domains
P-type ATPase C-terminal   P-type ATPase N-terminal

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P98197-F1-model_v2 AlphaFold P98197 1-1187 view protein structure

Promoters
RGD ID:6842805
Promoter ID:MM_KWN:53651
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   ES_Cell,   Lung
Transcripts:ENSMUST00000033818,   ENSMUST00000091237,   UC009KWF.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36812,756,711 - 12,757,512 (+)MPROMDB
RGD ID:8666457
Promoter ID:EPDNEW_M11260
Type:initiation region
Name:Atp11a_1
Description:Mus musculus ATPase, class VI, type 11A , transcript variant1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38812,757,058 - 12,757,118EPDNEW
RGD ID:6842804
Promoter ID:MM_KWN:53652
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Kidney,   Lung
Transcripts:OTTMUST00000048812
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36812,811,849 - 12,812,349 (+)MPROMDB
RGD ID:6842806
Promoter ID:MM_KWN:53653
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Kidney,   Lung
Transcripts:OTTMUST00000048813
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36812,821,436 - 12,822,712 (+)MPROMDB
RGD ID:6842810
Promoter ID:MM_KWN:53656
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Kidney
Transcripts:UC009KWJ.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36812,835,136 - 12,835,636 (+)MPROMDB
RGD ID:6842808
Promoter ID:MM_KWN:53658
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Kidney,   Lung
Transcripts:OTTMUST00000048814
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36812,849,211 - 12,850,287 (+)MPROMDB
RGD ID:6842809
Promoter ID:MM_KWN:53659
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain,   Kidney,   Lung
Transcripts:OTTMUST00000048817
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36812,856,236 - 12,856,837 (+)MPROMDB
RGD ID:6842807
Promoter ID:MM_KWN:53660
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Kidney,   Lung
Transcripts:OTTMUST00000048816
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36812,857,874 - 12,858,374 (+)MPROMDB
RGD ID:6842811
Promoter ID:MM_KWN:53661
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_2Hour,   Brain,   Kidney,   Lung,   Spleen
Transcripts:OTTMUST00000071389
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36812,860,636 - 12,861,537 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1354735 AgrOrtholog
Ensembl Genes ENSMUSG00000031441 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000033818 ENTREZGENE
  ENSMUSP00000033818.4 UniProtKB/TrEMBL
  ENSMUSP00000088779 ENTREZGENE
  ENSMUSP00000088779.6 UniProtKB/Swiss-Prot
  ENSMUSP00000114312.2 UniProtKB/TrEMBL
  ENSMUSP00000117091.2 UniProtKB/TrEMBL
  ENSMUSP00000120625.2 UniProtKB/TrEMBL
  ENSMUSP00000121567.2 UniProtKB/TrEMBL
  ENSMUSP00000121989.2 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000033818 ENTREZGENE
  ENSMUST00000033818.10 UniProtKB/TrEMBL
  ENSMUST00000091237 ENTREZGENE
  ENSMUST00000091237.12 UniProtKB/Swiss-Prot
  ENSMUST00000131804.2 UniProtKB/TrEMBL
  ENSMUST00000132974.8 UniProtKB/TrEMBL
  ENSMUST00000133338.8 UniProtKB/TrEMBL
  ENSMUST00000143359.8 UniProtKB/TrEMBL
  ENSMUST00000152273.2 UniProtKB/TrEMBL
Gene3D-CATH 3.40.1110.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.40.50.1000 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Calcium-transporting ATPase, cytoplasmic transduction domain A UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro ATPase_P-typ_cyto_dom_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ATPase_P-typ_P_site UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ATPase_P-typ_TM_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ATPase_P-typ_transduc_dom_A_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  HAD-like_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  HAD_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  P-type_ATPase_IV UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  P-type_ATPase_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  P_typ_ATPase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  P_typ_ATPase_c UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  P_typ_ATPase_HD_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:50770 UniProtKB/Swiss-Prot
MGD MGI:1354735 ENTREZGENE
NCBI Gene 50770 ENTREZGENE
PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR24092:SF33 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Cation_ATPase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  E1-E2_ATPase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PhoLip_ATPase_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PhoLip_ATPase_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Atp11a PhenoGen
PRINTS CATATPASE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE ATPASE_E1_E2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF56784 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF81653 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF81660 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF81665 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
TIGRFAMs ATPase-Plipid UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ATPase_P-type UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt AT11A_MOUSE UniProtKB/Swiss-Prot
  B2RS49 ENTREZGENE
  D6RII8_MOUSE UniProtKB/TrEMBL
  E9Q3G7 ENTREZGENE, UniProtKB/TrEMBL
  F6QJS5_MOUSE UniProtKB/TrEMBL
  F6R5M4_MOUSE UniProtKB/TrEMBL
  F6Z063_MOUSE UniProtKB/TrEMBL
  F6Z4J2_MOUSE UniProtKB/TrEMBL
  P98197 ENTREZGENE
  Q8BGE2_MOUSE UniProtKB/TrEMBL
UniProt Secondary B2RS49 UniProtKB/Swiss-Prot