BCL7C (BAF chromatin remodeling complex subunit BCL7C) - Rat Genome Database

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Gene: BCL7C (BAF chromatin remodeling complex subunit BCL7C) Homo sapiens
Analyze
Symbol: BCL7C
Name: BAF chromatin remodeling complex subunit BCL7C
RGD ID: 1318207
HGNC Page HGNC:1006
Description: Predicted to be involved in several processes, including positive regulation of stem cell population maintenance; regulation of cell cycle process; and regulation of nucleobase-containing compound metabolic process. Part of SWI/SNF complex.
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: B-cell CLL/lymphoma 7 protein family member C; B-cell CLL/lymphoma 7C; BCL tumor suppressor 7C; BCL7C, BAF complex component; SMARCJ3
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381630,833,626 - 30,894,077 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1630,833,626 - 30,894,302 (-)EnsemblGRCh38hg38GRCh38
GRCh371630,844,947 - 30,905,398 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361630,806,617 - 30,812,900 (-)NCBINCBI36Build 36hg18NCBI36
Build 341630,806,618 - 30,812,900NCBI
Celera1629,392,347 - 29,398,624 (+)NCBICelera
Cytogenetic Map16p11.2NCBI
HuRef1628,461,875 - 28,468,157 (-)NCBIHuRef
CHM1_11632,216,199 - 32,222,485 (-)NCBICHM1_1
T2T-CHM13v2.01631,221,122 - 31,281,535 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

References - curated
# Reference Title Reference Citation
1. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8605326   PMID:8804307   PMID:9931421   PMID:10078207   PMID:10778858   PMID:11790558   PMID:12192000   PMID:12215535   PMID:12477932   PMID:15302935   PMID:15345747   PMID:15489334  
PMID:17081983   PMID:17207965   PMID:18809673   PMID:19279220   PMID:19336552   PMID:19573080   PMID:19759913   PMID:19773279   PMID:20467437   PMID:21555454   PMID:21832049   PMID:23275444  
PMID:23644491   PMID:24981860   PMID:25066234   PMID:26186194   PMID:26344197   PMID:26496610   PMID:27634302   PMID:28514442   PMID:29374058   PMID:30510198   PMID:30554943   PMID:30884312  
PMID:30945288   PMID:31043422   PMID:31753913   PMID:33306126   PMID:33640491   PMID:33961781   PMID:34079125   PMID:34591612   PMID:35013218   PMID:35140242   PMID:35271311   PMID:36089195  
PMID:38297188  


Genomics

Comparative Map Data
BCL7C
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381630,833,626 - 30,894,077 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1630,833,626 - 30,894,302 (-)EnsemblGRCh38hg38GRCh38
GRCh371630,844,947 - 30,905,398 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361630,806,617 - 30,812,900 (-)NCBINCBI36Build 36hg18NCBI36
Build 341630,806,618 - 30,812,900NCBI
Celera1629,392,347 - 29,398,624 (+)NCBICelera
Cytogenetic Map16p11.2NCBI
HuRef1628,461,875 - 28,468,157 (-)NCBIHuRef
CHM1_11632,216,199 - 32,222,485 (-)NCBICHM1_1
T2T-CHM13v2.01631,221,122 - 31,281,535 (-)NCBIT2T-CHM13v2.0
Bcl7c
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm397127,260,626 - 127,307,938 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl7127,260,628 - 127,308,105 (-)EnsemblGRCm39 Ensembl
GRCm387127,661,454 - 127,708,766 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl7127,661,456 - 127,708,933 (-)EnsemblGRCm38mm10GRCm38
MGSCv377134,848,492 - 134,852,280 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv367127,496,126 - 127,499,914 (-)NCBIMGSCv36mm8
Celera7127,544,042 - 127,547,828 (-)NCBICelera
Cytogenetic Map7F3NCBI
cM Map769.65NCBI
Bcl7c
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81191,703,432 - 191,754,751 (-)NCBIGRCr8
mRatBN7.21182,277,163 - 182,324,274 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1182,260,164 - 182,324,163 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1190,670,883 - 190,674,713 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01197,856,975 - 197,860,805 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01190,527,474 - 190,531,309 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01199,112,192 - 199,159,125 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1199,155,296 - 199,159,125 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01206,135,832 - 206,182,756 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41186,993,655 - 186,997,484 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11187,143,535 - 187,147,236 (-)NCBI
Celera1179,971,554 - 179,975,380 (-)NCBICelera
Cytogenetic Map1q37NCBI
Bcl7c
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554937,693,084 - 7,733,086 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554937,728,229 - 7,733,086 (-)NCBIChiLan1.0ChiLan1.0
LOC100971944
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21834,082,993 - 34,099,516 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11638,829,941 - 38,900,859 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01624,075,296 - 24,135,637 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11631,254,073 - 31,259,885 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1631,198,675 - 31,261,837 (-)Ensemblpanpan1.1panPan2
BCL7C
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1617,305,670 - 17,354,375 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl617,293,776 - 17,340,526 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha618,880,756 - 18,884,492 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0617,436,013 - 17,439,754 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl617,435,987 - 17,476,331 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1617,236,369 - 17,240,109 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0617,155,514 - 17,159,250 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0617,468,067 - 17,471,803 (+)NCBIUU_Cfam_GSD_1.0
Bcl7c
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344125,176,799 - 125,179,982 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493650113,240,937 - 13,278,099 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493650113,274,659 - 13,278,099 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
BCL7C
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl317,547,582 - 17,551,853 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1317,547,546 - 17,589,431 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2317,911,319 - 17,953,657 (-)NCBISscrofa10.2Sscrofa10.2susScr3
BCL7C
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1527,518,716 - 27,577,695 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl527,570,726 - 27,577,538 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660681,887,797 - 1,949,972 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Bcl7c
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462478213,938,487 - 13,973,930 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462478213,933,876 - 13,973,839 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in BCL7C
19 total Variants

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
NM_004765.3(BCL7C):c.349G>A (p.Gly117Ser) single nucleotide variant Malignant melanoma [RCV000071095] Chr16:30892679 [GRCh38]
Chr16:30904000 [GRCh37]
Chr16:30811501 [NCBI36]
Chr16:16p11.2
not provided
GRCh38/hg38 16p11.2-11.1(chr16:30691912-36160463)x3 copy number gain See cases [RCV000133811] Chr16:30691912..36160463 [GRCh38]
Chr16:30703233..35147508 [GRCh37]
Chr16:30610734..35005009 [NCBI36]
Chr16:16p11.2-11.1
pathogenic
GRCh38/hg38 16p11.2(chr16:29909613-31438697)x3 copy number gain See cases [RCV000135339] Chr16:29909613..31438697 [GRCh38]
Chr16:29920934..31450018 [GRCh37]
Chr16:29828435..31357519 [NCBI36]
Chr16:16p11.2
pathogenic
GRCh38/hg38 16p12.1-11.2(chr16:27311746-31193406)x3 copy number gain See cases [RCV000140341] Chr16:27311746..31193406 [GRCh38]
Chr16:27323067..31204727 [GRCh37]
Chr16:27230568..31112228 [NCBI36]
Chr16:16p12.1-11.2
pathogenic
GRCh38/hg38 16p12.2-11.2(chr16:23752047-31943755)x3 copy number gain See cases [RCV000141141] Chr16:23752047..31943755 [GRCh38]
Chr16:23763368..31955076 [GRCh37]
Chr16:23670869..31862577 [NCBI36]
Chr16:16p12.2-11.2
pathogenic
GRCh37/hg19 16p11.2(chr16:30391304-31122666)x3 copy number gain Breast ductal adenocarcinoma [RCV000207028] Chr16:30391304..31122666 [GRCh37]
Chr16:16p11.2
uncertain significance
GRCh37/hg19 16p13.3-11.2(chr16:1279324-31926800)x3 copy number gain Breast ductal adenocarcinoma [RCV000207053] Chr16:1279324..31926800 [GRCh37]
Chr16:16p13.3-11.2
uncertain significance
Single allele deletion Branched-chain keto acid dehydrogenase kinase deficiency [RCV000735205] Chr16:30554158..31536880 [GRCh37]
Chr16:16p11.2
uncertain significance
GRCh37/hg19 16p13.3-q24.3(chr16:69193-90274381)x3 copy number gain See cases [RCV000446684] Chr16:69193..90274381 [GRCh37]
Chr16:16p13.3-q24.3
pathogenic
GRCh37/hg19 16p11.2(chr16:30830287-31827011)x4 copy number gain See cases [RCV000447708] Chr16:30830287..31827011 [GRCh37]
Chr16:16p11.2
uncertain significance
GRCh37/hg19 16p11.2(chr16:28826162-29043901)x1 copy number loss See cases [RCV000448084] Chr16:28826162..29043901 [GRCh37]
Chr16:16p11.2
likely pathogenic
GRCh37/hg19 16p13.2-q24.3(chr16:9273328-89548493)x3 copy number gain See cases [RCV000511622] Chr16:9273328..89548493 [GRCh37]
Chr16:16p13.2-q24.3
uncertain significance
GRCh37/hg19 16p11.2(chr16:30607048-31117069)x1 copy number loss See cases [RCV000511454] Chr16:30607048..31117069 [GRCh37]
Chr16:16p11.2
uncertain significance
maternal UPD(16p) complex Hemimegalencephaly [RCV000494707] Chr16:1280042..33710558 [GRCh37]
Chr16:16p13.3-11.2
pathogenic
GRCh37/hg19 16p13.3-q24.3(chr16:85881-90155062)x3 copy number gain See cases [RCV000512138] Chr16:85881..90155062 [GRCh37]
Chr16:16p13.3-q24.3
pathogenic
GRCh37/hg19 16p13.3-q24.3(chr16:85881-90155062) copy number gain See cases [RCV000511296] Chr16:85881..90155062 [GRCh37]
Chr16:16p13.3-q24.3
pathogenic
NM_004765.4(BCL7C):c.109A>G (p.Thr37Ala) single nucleotide variant not specified [RCV004310782] Chr16:30893274 [GRCh38]
Chr16:30904595 [GRCh37]
Chr16:16p11.2
uncertain significance
GRCh37/hg19 16p13.3-q24.3(chr16:88165-90274695)x3 copy number gain not provided [RCV000738918] Chr16:88165..90274695 [GRCh37]
Chr16:16p13.3-q24.3
pathogenic
GRCh37/hg19 16p13.3-q24.3(chr16:61451-90294632)x3 copy number gain not provided [RCV000738915] Chr16:61451..90294632 [GRCh37]
Chr16:16p13.3-q24.3
pathogenic
GRCh37/hg19 16p13.3-q24.3(chr16:88165-90163275)x3 copy number gain not provided [RCV000738917] Chr16:88165..90163275 [GRCh37]
Chr16:16p13.3-q24.3
pathogenic
GRCh37/hg19 16p11.2(chr16:30738551-34194635)x3 copy number gain not provided [RCV000739123] Chr16:30738551..34194635 [GRCh37]
Chr16:16p11.2
benign
GRCh37/hg19 16p11.2(chr16:30851860-31156762)x1 copy number loss not provided [RCV000848082] Chr16:30851860..31156762 [GRCh37]
Chr16:16p11.2
pathogenic
GRCh37/hg19 16p13.3-11.2(chr16:5805001-34230001) copy number gain Microcephaly [RCV001252948] Chr16:5805001..34230001 [GRCh37]
Chr16:16p13.3-11.2
pathogenic
GRCh37/hg19 16p11.2(chr16:30350747-31905898)x3 copy number gain not provided [RCV001258619] Chr16:30350747..31905898 [GRCh37]
Chr16:16p11.2
uncertain significance
NC_000016.9:g.(?_30712146)_(31021717_?)dup duplication Generalized epilepsy with febrile seizures plus, type 9 [RCV003122990] Chr16:30712146..31021717 [GRCh37]
Chr16:16p11.2
uncertain significance
NM_004765.4(BCL7C):c.251G>C (p.Gly84Ala) single nucleotide variant not specified [RCV004318604] Chr16:30892869 [GRCh38]
Chr16:30904190 [GRCh37]
Chr16:16p11.2
uncertain significance
NM_004765.4(BCL7C):c.422C>A (p.Pro141Gln) single nucleotide variant not specified [RCV004332185] Chr16:30892606 [GRCh38]
Chr16:30903927 [GRCh37]
Chr16:16p11.2
uncertain significance
GRCh37/hg19 16p11.2(chr16:30460206-30906733)x3 copy number gain not provided [RCV002475788] Chr16:30460206..30906733 [GRCh37]
Chr16:16p11.2
uncertain significance
NM_004765.4(BCL7C):c.224G>A (p.Arg75Gln) single nucleotide variant not specified [RCV004119189] Chr16:30892896 [GRCh38]
Chr16:30904217 [GRCh37]
Chr16:16p11.2
uncertain significance
NM_004765.4(BCL7C):c.73A>G (p.Ile25Val) single nucleotide variant not specified [RCV004177074] Chr16:30893872 [GRCh38]
Chr16:30905193 [GRCh37]
Chr16:16p11.2
uncertain significance
NM_004765.4(BCL7C):c.188G>A (p.Gly63Asp) single nucleotide variant not specified [RCV004153592] Chr16:30892932 [GRCh38]
Chr16:30904253 [GRCh37]
Chr16:16p11.2
uncertain significance
NM_004765.4(BCL7C):c.528+3G>C single nucleotide variant not provided [RCV002510557] Chr16:30888857 [GRCh38]
Chr16:30900178 [GRCh37]
Chr16:16p11.2
not provided
NM_004765.4(BCL7C):c.617C>A (p.Pro206Gln) single nucleotide variant not specified [RCV004071140] Chr16:30887902 [GRCh38]
Chr16:30899223 [GRCh37]
Chr16:16p11.2
uncertain significance
NM_004765.4(BCL7C):c.308C>T (p.Ser103Leu) single nucleotide variant not specified [RCV004108134] Chr16:30892720 [GRCh38]
Chr16:30904041 [GRCh37]
Chr16:16p11.2
uncertain significance
NM_004765.4(BCL7C):c.425G>A (p.Arg142Gln) single nucleotide variant not specified [RCV004086358] Chr16:30892603 [GRCh38]
Chr16:30903924 [GRCh37]
Chr16:16p11.2
likely benign
NM_004765.4(BCL7C):c.535G>A (p.Glu179Lys) single nucleotide variant not specified [RCV004332811] Chr16:30887984 [GRCh38]
Chr16:30899305 [GRCh37]
Chr16:16p11.2
uncertain significance
NM_004765.4(BCL7C):c.602C>T (p.Ser201Leu) single nucleotide variant not specified [RCV004300049] Chr16:30887917 [GRCh38]
Chr16:30899238 [GRCh37]
Chr16:16p11.2
uncertain significance
NM_004765.4(BCL7C):c.220C>T (p.Arg74Cys) single nucleotide variant not specified [RCV004426335] Chr16:30892900 [GRCh38]
Chr16:30904221 [GRCh37]
Chr16:16p11.2
uncertain significance
NC_000016.9:g.(?_28889993)_(31202759_?)del deletion Dilated Cardiomyopathy, Dominant [RCV004582801] Chr16:28889993..31202759 [GRCh37]
Chr16:16p11.2
uncertain significance
NM_004765.4(BCL7C):c.643C>T (p.Pro215Ser) single nucleotide variant not specified [RCV004605855] Chr16:30887876 [GRCh38]
Chr16:30899197 [GRCh37]
Chr16:16p11.2
uncertain significance
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1937
Count of miRNA genes:913
Interacting mature miRNAs:1074
Transcripts:ENST00000215115, ENST00000380317, ENST00000572628, ENST00000574418, ENST00000576194
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
597414651GWAS1510725_HLewy body dementia QTL GWAS1510725 (human)1e-08Lewy body dementia163087532230875323Human
597308280GWAS1404354_Hplatelet count QTL GWAS1404354 (human)4e-10platelet quantity (VT:0003179)platelet count (CMO:0000029)163085963630859637Human
596968497GWAS1088016_Hsystolic blood pressure QTL GWAS1088016 (human)8e-12systolic blood pressuresystolic blood pressure (CMO:0000004)163086153430861535Human
597237405GWAS1333479_Hlymphocyte count QTL GWAS1333479 (human)1e-08lymphocyte countblood lymphocyte count (CMO:0000031)163086401430864015Human
597452090GWAS1548164_HHbA1c measurement QTL GWAS1548164 (human)7e-12HbA1c measurementblood hemoglobin A1c level (CMO:0002786)163088422430884225Human
597346615GWAS1442689_Hbody mass index QTL GWAS1442689 (human)0.0000005body mass indexbody mass index (BMI) (CMO:0000105)163086622330866224Human
597449197GWAS1545271_Hserum non-albumin protein measurement QTL GWAS1545271 (human)4e-19serum non-albumin protein measurementserum globulin level (CMO:0002399)163088422430884225Human
597315759GWAS1411833_Hsystolic blood pressure QTL GWAS1411833 (human)8e-12systolic blood pressuresystolic blood pressure (CMO:0000004)163086153430861535Human
597461098GWAS1557172_Hdiastolic blood pressure QTL GWAS1557172 (human)2e-13diastolic blood pressurediastolic blood pressure (CMO:0000005)163089103230891033Human
597346573GWAS1442647_Hbody mass index QTL GWAS1442647 (human)6e-11body mass indexbody mass index (BMI) (CMO:0000105)163086622330866224Human
597098158GWAS1194232_Hcomparative body size at age 10, self-reported QTL GWAS1194232 (human)2e-12comparative body size at age 10, self-reported163086622330866224Human
597311975GWAS1408049_HHMG CoA reductase inhibitor use measurement QTL GWAS1408049 (human)3e-08HMG CoA reductase inhibitor use measurement163083481330834814Human
597108457GWAS1204531_HHMG CoA reductase inhibitor use measurement QTL GWAS1204531 (human)2e-09HMG CoA reductase inhibitor use measurement163083481330834814Human

Markers in Region
D16S3338  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371630,906,330 - 30,906,470UniSTSGRCh37
Build 361630,813,831 - 30,813,971RGDNCBI36
Celera1629,391,276 - 29,391,416RGD
Cytogenetic Map16p11.2UniSTS
Cytogenetic Map16p11UniSTS
HuRef1628,469,088 - 28,469,228UniSTS


Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
entire extraembryonic component
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
pharyngeal arch
renal system
reproductive system
respiratory system
sensory system
visual system
1204 2438 2788 2251 4973 1726 2351 5 624 1949 465 2269 7302 6469 53 3734 1 852 1744 1617 175 1

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001286526 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_004765 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011545980 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017023885 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017023886 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017023887 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017023888 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047434896 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047434897 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047434898 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047434899 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047434900 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054314371 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054314372 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054314373 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054314374 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054314375 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054314376 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054314377 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC135048 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC138417 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ223980 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC019071 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC058863 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BG055884 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471192 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068262 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  MW804112 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENST00000215115   ⟹   ENSP00000215115
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1630,887,795 - 30,894,077 (-)Ensembl
Ensembl Acc Id: ENST00000380317   ⟹   ENSP00000369674
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1630,833,626 - 30,894,302 (-)Ensembl
Ensembl Acc Id: ENST00000572628   ⟹   ENSP00000459007
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1630,851,246 - 30,893,942 (-)Ensembl
Ensembl Acc Id: ENST00000574418   ⟹   ENSP00000461177
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1630,834,585 - 30,894,200 (-)Ensembl
Ensembl Acc Id: ENST00000576194
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1630,834,655 - 30,840,754 (-)Ensembl
RefSeq Acc Id: NM_001286526   ⟹   NP_001273455
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381630,833,626 - 30,894,077 (-)NCBI
HuRef1628,408,226 - 28,468,381 (-)NCBI
CHM1_11632,162,536 - 32,222,709 (-)NCBI
T2T-CHM13v2.01631,221,122 - 31,281,535 (-)NCBI
Sequence:
RefSeq Acc Id: NM_004765   ⟹   NP_004756
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381630,887,795 - 30,894,077 (-)NCBI
GRCh371630,845,373 - 30,905,852 (-)NCBI
Build 361630,806,617 - 30,812,900 (-)NCBI Archive
Celera1629,392,347 - 29,398,624 (+)RGD
HuRef1628,408,226 - 28,468,381 (-)NCBI
CHM1_11632,216,199 - 32,222,709 (-)NCBI
T2T-CHM13v2.01631,275,254 - 31,281,535 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011545980   ⟹   XP_011544282
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381630,850,979 - 30,894,077 (-)NCBI
Sequence:
RefSeq Acc Id: XM_047434896   ⟹   XP_047290852
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381630,850,979 - 30,894,077 (-)NCBI
RefSeq Acc Id: XM_047434897   ⟹   XP_047290853
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381630,850,979 - 30,894,077 (-)NCBI
RefSeq Acc Id: XM_047434898   ⟹   XP_047290854
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381630,850,979 - 30,894,077 (-)NCBI
RefSeq Acc Id: XM_047434899   ⟹   XP_047290855
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381630,887,795 - 30,894,077 (-)NCBI
RefSeq Acc Id: XM_047434900   ⟹   XP_047290856
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381630,888,871 - 30,894,077 (-)NCBI
RefSeq Acc Id: XM_054314371   ⟹   XP_054170346
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01631,238,472 - 31,281,535 (-)NCBI
RefSeq Acc Id: XM_054314372   ⟹   XP_054170347
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01631,238,466 - 31,281,535 (-)NCBI
RefSeq Acc Id: XM_054314373   ⟹   XP_054170348
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01631,238,472 - 31,281,535 (-)NCBI
RefSeq Acc Id: XM_054314374   ⟹   XP_054170349
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01631,238,472 - 31,281,535 (-)NCBI
RefSeq Acc Id: XM_054314375   ⟹   XP_054170350
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01631,266,965 - 31,281,535 (-)NCBI
RefSeq Acc Id: XM_054314376   ⟹   XP_054170351
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01631,275,254 - 31,281,535 (-)NCBI
RefSeq Acc Id: XM_054314377   ⟹   XP_054170352
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01631,276,330 - 31,281,535 (-)NCBI
RefSeq Acc Id: NP_004756   ⟸   NM_004765
- Peptide Label: isoform 2
- UniProtKB: Q8WUZ0 (UniProtKB/Swiss-Prot),   O43770 (UniProtKB/Swiss-Prot),   Q6PD89 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001273455   ⟸   NM_001286526
- Peptide Label: isoform 1
- UniProtKB: Q8WUZ0 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_011544282   ⟸   XM_011545980
- Peptide Label: isoform X2
- UniProtKB: I3L1Q2 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSP00000215115   ⟸   ENST00000215115
Ensembl Acc Id: ENSP00000459007   ⟸   ENST00000572628
Ensembl Acc Id: ENSP00000461177   ⟸   ENST00000574418
Ensembl Acc Id: ENSP00000369674   ⟸   ENST00000380317
RefSeq Acc Id: XP_047290854   ⟸   XM_047434898
- Peptide Label: isoform X4
RefSeq Acc Id: XP_047290853   ⟸   XM_047434897
- Peptide Label: isoform X3
RefSeq Acc Id: XP_047290852   ⟸   XM_047434896
- Peptide Label: isoform X1
- UniProtKB: I3L1Q2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_047290855   ⟸   XM_047434899
- Peptide Label: isoform X5
RefSeq Acc Id: XP_047290856   ⟸   XM_047434900
- Peptide Label: isoform X6
- UniProtKB: I3L4D5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054170347   ⟸   XM_054314372
- Peptide Label: isoform X2
- UniProtKB: I3L1Q2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054170349   ⟸   XM_054314374
- Peptide Label: isoform X4
RefSeq Acc Id: XP_054170348   ⟸   XM_054314373
- Peptide Label: isoform X3
RefSeq Acc Id: XP_054170346   ⟸   XM_054314371
- Peptide Label: isoform X1
- UniProtKB: I3L1Q2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054170350   ⟸   XM_054314375
- Peptide Label: isoform X7
RefSeq Acc Id: XP_054170351   ⟸   XM_054314376
- Peptide Label: isoform X5
RefSeq Acc Id: XP_054170352   ⟸   XM_054314377
- Peptide Label: isoform X6
- UniProtKB: I3L4D5 (UniProtKB/TrEMBL)
Protein Domains
Mos1 transposase HTH

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8WUZ0-F1-model_v2 AlphaFold Q8WUZ0 1-217 view protein structure

Promoters
RGD ID:6792999
Promoter ID:HG_KWN:23576
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   HeLa_S3,   K562,   Lymphoblastoid
Transcripts:ENST00000358950,   OTTHUMT00000255547,   OTTHUMT00000255548
Position:
Human AssemblyChrPosition (strand)Source
Build 361630,812,716 - 30,813,257 (-)MPROMDB
RGD ID:7232029
Promoter ID:EPDNEW_H21760
Type:initiation region
Name:BCL7C_1
Description:BCL tumor suppressor 7C
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh381630,894,019 - 30,894,079EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:1006 AgrOrtholog
COSMIC BCL7C COSMIC
Ensembl Genes ENSG00000099385 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENST00000215115 ENTREZGENE
  ENST00000215115.5 UniProtKB/Swiss-Prot
  ENST00000380317 ENTREZGENE
  ENST00000380317.8 UniProtKB/Swiss-Prot
  ENST00000572628 ENTREZGENE
  ENST00000572628.5 UniProtKB/TrEMBL
  ENST00000574418 ENTREZGENE
  ENST00000574418.5 UniProtKB/TrEMBL
Gene3D-CATH 1.10.10.1450 UniProtKB/TrEMBL
GTEx ENSG00000099385 GTEx
HGNC ID HGNC:1006 ENTREZGENE
Human Proteome Map BCL7C Human Proteome Map
InterPro BCL7 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Mos1_HTH UniProtKB/TrEMBL
KEGG Report hsa:9274 UniProtKB/Swiss-Prot
NCBI Gene 9274 ENTREZGENE
OMIM 605847 OMIM
PANTHER B-CELL CLL/LYMPHOMA 7 PROTEIN FAMILY MEMBER C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  BAF CHROMATIN REMODELING COMPLEX SUBUNIT BCL7C UniProtKB/TrEMBL
  PTHR12767 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam BCL_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  HTH_48 UniProtKB/TrEMBL
PharmGKB PA25316 PharmGKB
UniProt BCL7C_HUMAN UniProtKB/Swiss-Prot
  I3L1Q2 ENTREZGENE, UniProtKB/TrEMBL
  I3L4D5 ENTREZGENE, UniProtKB/TrEMBL
  O43770 ENTREZGENE
  Q6PD89 ENTREZGENE
  Q8WUZ0 ENTREZGENE
UniProt Secondary O43770 UniProtKB/Swiss-Prot
  Q6PD89 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-01-29 BCL7C  BAF chromatin remodeling complex subunit BCL7C  BCL7C  BCL7C, BAF complex component  Symbol and/or name change 5135510 APPROVED
2018-11-06 BCL7C  BCL7C, BAF complex component  BCL7C  BCL tumor suppressor 7C  Symbol and/or name change 5135510 APPROVED
2016-07-12 BCL7C  BCL tumor suppressor 7C  BCL7C  B-cell CLL/lymphoma 7C  Symbol and/or name change 5135510 APPROVED