Chst11 (carbohydrate sulfotransferase 11) - Rat Genome Database

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Gene: Chst11 (carbohydrate sulfotransferase 11) Mus musculus
Analyze
Symbol: Chst11
Name: carbohydrate sulfotransferase 11
RGD ID: 1318148
MGI Page MGI
Description: Enables N-acetylgalactosamine 4-sulfate 6-O-sulfotransferase activity. Acts upstream of or within several processes, including chondroitin sulfate biosynthetic process; post-anal tail morphogenesis; and skeletal system development. Predicted to be located in Golgi membrane. Is expressed in several structures, including alimentary system; central nervous system; ear; heart; and skeletal system. Orthologous to human CHST11 (carbohydrate sulfotransferase 11).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 1110020P09Rik; C4s; C4S-1; C4ST; C4ST-; C4ST-1; C4ST1; chondroitin 4; chondroitin 4-O-sulfotransferase 1; chondroitin 4-sulfotransferase 1
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391082,820,274 - 83,031,738 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1082,821,332 - 83,031,734 (+)EnsemblGRCm39 Ensembl
GRCm381082,984,440 - 83,195,904 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1082,985,498 - 83,195,900 (+)EnsemblGRCm38mm10GRCm38
MGSCv371082,448,242 - 82,658,645 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361082,415,296 - 82,625,699 (+)NCBIMGSCv36mm8
Celera1084,972,909 - 85,183,903 (+)NCBICelera
Cytogenetic Map10C1NCBI
cM Map1040.66NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-epigallocatechin 3-gallate  (ISO)
1,1-dichloroethene  (EXP)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (ISO)
2-palmitoylglycerol  (ISO)
3'-amino-3'-deoxy-N(6),N(6)-dimethyladenosine  (ISO)
4-hydroxyphenyl retinamide  (EXP)
6-propyl-2-thiouracil  (ISO)
acrylamide  (ISO)
aflatoxin B1  (ISO)
Aflatoxin B2 alpha  (ISO)
all-trans-retinoic acid  (EXP,ISO)
antirheumatic drug  (ISO)
arsenite(3-)  (ISO)
atrazine  (ISO)
benzo[a]pyrene  (EXP,ISO)
benzo[e]pyrene  (ISO)
bisphenol A  (EXP,ISO)
bortezomib  (ISO)
butanal  (ISO)
cadmium dichloride  (ISO)
calcitriol  (ISO)
carbon nanotube  (EXP)
CGP 52608  (ISO)
choline  (EXP)
chromium(6+)  (ISO)
cisplatin  (ISO)
cyclosporin A  (ISO)
dextran sulfate  (EXP)
Dibutyl phosphate  (ISO)
dioxygen  (ISO)
doxorubicin  (ISO)
epichlorohydrin  (ISO)
ethanol  (EXP)
folic acid  (EXP)
FR900359  (ISO)
fulvestrant  (ISO)
gentamycin  (ISO)
hexaconazole  (EXP)
L-methionine  (EXP)
lead diacetate  (ISO)
lead(0)  (ISO)
methapyrilene  (ISO)
methoxychlor  (ISO)
methylmercury chloride  (ISO)
mono(2-ethylhexyl) phthalate  (EXP)
N,N-diethyl-m-toluamide  (ISO)
nickel atom  (ISO)
nickel sulfate  (ISO)
paracetamol  (ISO)
perfluorononanoic acid  (ISO)
permethrin  (ISO)
phenobarbital  (ISO)
potassium chromate  (ISO)
progesterone  (ISO)
propanal  (ISO)
silicon dioxide  (EXP,ISO)
sodium arsenite  (ISO)
sodium dodecyl sulfate  (ISO)
sunitinib  (ISO)
tetrachloromethane  (EXP)
thiram  (ISO)
Thrombin  (ISO)
titanium dioxide  (EXP)
trichloroethene  (ISO)
triclosan  (ISO)
triphenyl phosphate  (ISO)
troglitazone  (EXP)
valproic acid  (EXP,ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. MGDs mouse GO annotations MGD data from the GO Consortium
2. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
3. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
4. SMPDB Annotation Import Pipeline Pipeline to import SMPDB annotations from SMPDB into RGD
5. Mouse MP Annotation Import Pipeline RGD automated import pipeline
6. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10722746   PMID:10922068   PMID:10988300   PMID:11042159   PMID:11056388   PMID:11076861   PMID:11217851   PMID:12351172   PMID:12477932   PMID:14681479  
PMID:16079159   PMID:16141072   PMID:16141073   PMID:17040900   PMID:17599069   PMID:18079434   PMID:18539921   PMID:18667431   PMID:19915053   PMID:20812917   PMID:21123170   PMID:21138417  
PMID:21284936   PMID:21677750   PMID:21873635   PMID:22159417   PMID:27751852   PMID:27996060   PMID:28185240   PMID:29539633   PMID:30228991   PMID:30973865   PMID:32201365   PMID:33905568  
PMID:34169071   PMID:35608020   PMID:38355793  


Genomics

Comparative Map Data
Chst11
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391082,820,274 - 83,031,738 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1082,821,332 - 83,031,734 (+)EnsemblGRCm39 Ensembl
GRCm381082,984,440 - 83,195,904 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1082,985,498 - 83,195,900 (+)EnsemblGRCm38mm10GRCm38
MGSCv371082,448,242 - 82,658,645 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361082,415,296 - 82,625,699 (+)NCBIMGSCv36mm8
Celera1084,972,909 - 85,183,903 (+)NCBICelera
Cytogenetic Map10C1NCBI
cM Map1040.66NCBI
CHST11
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3812104,456,948 - 104,762,014 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl12104,455,295 - 104,762,014 (+)EnsemblGRCh38hg38GRCh38
GRCh3712104,850,726 - 105,155,792 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3612103,370,614 - 103,676,013 (+)NCBINCBI36Build 36hg18NCBI36
Build 3412103,353,244 - 103,654,350NCBI
Celera12104,515,392 - 104,820,429 (+)NCBICelera
Cytogenetic Map12q23.3NCBI
HuRef12101,909,453 - 102,214,785 (+)NCBIHuRef
CHM1_112104,816,552 - 105,121,568 (+)NCBICHM1_1
T2T-CHM13v2.012104,418,595 - 104,723,625 (+)NCBIT2T-CHM13v2.0
Chst11
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8722,412,121 - 22,630,577 (-)NCBIGRCr8
mRatBN7.2720,524,535 - 20,743,008 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl720,528,100 - 20,743,111 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx722,492,350 - 22,707,381 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0724,655,107 - 24,870,149 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0724,432,117 - 24,647,158 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0726,641,856 - 26,890,503 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl726,645,422 - 26,859,716 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0726,767,389 - 26,981,343 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4722,721,892 - 22,950,084 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1722,742,162 - 22,970,357 (-)NCBI
Celera717,709,216 - 17,922,331 (-)NCBICelera
Cytogenetic Map7q13NCBI
Chst11
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540538,985,046 - 39,139,021 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540538,985,046 - 39,134,130 (+)NCBIChiLan1.0ChiLan1.0
CHST11
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v210112,522,706 - 112,827,867 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan112112,518,967 - 112,824,262 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v012102,035,480 - 102,340,084 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.112105,730,321 - 105,735,380 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl12105,431,075 - 105,731,172 (+)Ensemblpanpan1.1panPan2
CHST11
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11033,555,629 - 33,810,808 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1033,555,628 - 33,810,558 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1033,472,156 - 33,730,826 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01034,395,250 - 34,654,055 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1034,398,784 - 34,654,634 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11034,130,242 - 34,389,255 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01034,413,800 - 34,672,705 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01034,607,391 - 34,867,023 (-)NCBIUU_Cfam_GSD_1.0
Chst11
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494516,875,838 - 17,082,355 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364929,886,254 - 10,092,221 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364929,886,269 - 10,092,725 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CHST11
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl579,788,572 - 80,067,795 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1579,788,558 - 80,068,903 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2583,185,065 - 83,190,211 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CHST11
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11199,662,890 - 99,982,276 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1199,665,290 - 99,981,977 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037145,029,522 - 145,339,512 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Chst11
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247504,223,561 - 4,391,218 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247504,227,229 - 4,391,177 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Chst11
8511 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1743
Count of miRNA genes:718
Interacting mature miRNAs:935
Transcripts:ENSMUST00000040110
Prediction methods:Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1302035Lmb4_mlupus in MRL and B6 F2 cross (mouse)Not determined106684818792258673Mouse
12910789Pwgrq19_mpost-weaning growth rate QTL 19 (mouse)108282870092169056Mouse
1300882Ath17_matherosclerosis 17 (mouse)Not determined105109149085091639Mouse
4142137Femwf3_mfemur work to failure 3 (mouse)Not determined75338568109338767Mouse
1301787Bsc1_mbrain size control 1 (mouse)Not determined105851696992517096Mouse
27226772Tibl13_mtibia length 13, 10 week (mouse)1018875748129635869Mouse
14746991Manh68_mmandible shape 68 (mouse)105228049786280497Mouse
4142380W3q11_mweight 3 weeks QTL 11 (mouse)Not determined1270405184079784Mouse
27226764Tibl19_mtibia length 19, 16 week (mouse)1039175996129635869Mouse
1357825Kidpq2_mkidney weight percentage QTL 2 (mouse)Not determined101270405184079784Mouse
1302150Bbaa18_mB.burgdorferi-associated arthritis 18 (mouse)Not determined104933801283338157Mouse
1301386Sysbp1_msystolic blood pressure 1 (mouse)Not determined101010826587401095Mouse
14747004Mancz8_mmandible centroid size 8 (mouse)1082078412116078412Mouse
1302067Scc9_mcolon tumor susceptibility 9 (mouse)Not determined1018259333125575232Mouse
26884411Bzwq8_mbi-zygomatic width QTL 8, 10 week (mouse)1044876096115935905Mouse
11039497Ltpr5a_mLeishmania tropica response 5a (mouse)1073506901107507047Mouse
1300533Aem3_manti-erythrocyte autoantibody modifier 3 (mouse)Not determined106549093899491121Mouse
26884403Cvht8_mcranial vault height 8, 16 week (mouse)102287589991035862Mouse
26884407Bzwq14_mbi-zygomatic width QTL 14, 16 wee (mouse)1045476096120635905Mouse
11251717Siim1_mstress induced immobility 1 (mouse)1078381268112381268Mouse
26884405Huml2_mhumerus length 2, 5 week (mouse)1069735830130430862Mouse
1357740Obsty3_mobesity 3 (mouse)Not determined108235478116190980Mouse
13208560Wght9_mweight 9 (mouse)1059835822120835905Mouse
4141956Egq7_mearly growth QTL 7 (mouse)Not determined1270405184079784Mouse
1357864Scfpq1_msubcutaneous fat pad percentage QTL 1 (mouse)Not determined101270405184079784Mouse
1357737Hpcr2_mhepatocarcinogen resistance 2 (mouse)Not determined104984822283848397Mouse
1301165Lith7_mlithogenic gene 7 (mouse)Not determined1082309418116309657Mouse
1302060El3_mepilepsy 3 (mouse)Not determined106549093899491121Mouse
4141054mwfh_mmodifier of white forlock hypopigmentation (mouse)Not determined83017003117017136Mouse
39128215Lwq17_mliver weight QTL 17 (mouse)101270405184079784Mouse
26884447Sklq9_mskull length QTL 9, 10 week (mouse)1067335830111735905Mouse
11353832Pcholq4_mplasma cholesterol QTL 4 (mouse)1073987216125515907Mouse
4141943W6q6_mweight 6 weeks QTL 6 (mouse)Not determined1270405184079784Mouse
11059553Lmr32d_mleishmaniasis resistance 32d (mouse)1082309418116309657Mouse
11059554Lmr32e_mleishmaniasis resistance 32e (mouse)1082309418116309657Mouse
11059555Lmr32f_mleishmaniasis resistance 32f (mouse)1082309418116309657Mouse
1357656Hrtq3_mheart weight QTL 3 (mouse)Not determined101270405184079784Mouse
26884426Cvht1_mcranial vault height 1, 5 week (mouse)1024675898121035905Mouse
10045641Jckm3_mjuvenile cystic kidney modifier 3 (mouse)Not determined104984818783848412Mouse
26884424Zlq9_mzygomatic length QTL 9, 16 week (mouse)1063935779115935905Mouse
26884430Zlq5_mzygomatic length QTL 5, 10 week (mouse)1067835830124835905Mouse
1357632Vtbt9_mvertebral trabecular bone trait 9 (mouse)Not determined1075338568109338767Mouse
1301966Lifespan2_mlife span 2 (mouse)Not determined104984822283848397Mouse
11353843Gluq1_mblood glucose QTL 1 (mouse)1073987216125515907Mouse
1300597Skull14_mskull morphology 14 (mouse)Not determined104984818783848412Mouse
4142169Pbwg16_mpostnatal body weight growth 16 (mouse)Not determined104984818783848412Mouse
1301502Eae17_msusceptibility to experimental allergic encephalomyelitis 17 (mouse)Not determined105109149085091639Mouse
10043881Adip24_madiposity 24 (mouse)Not determined1082392803116392952Mouse
1558757Eae34_mexperimental allergic encephalomyelitis susceptibility 34 (mouse)Not determined1021408154114217230Mouse
11059550Lmr32a_mleishmaniasis resistance 32a (mouse)1082309418116309657Mouse
11059551Lmr32b_mleishmaniasis resistance 32b (mouse)1082309418116309657Mouse
26884450Sklq15_mskull length QTL 15, 16 week (mouse)1059335822122335905Mouse
4141382Ssrq4_mstress response QTL 4 (mouse)Not determined8249093890856102Mouse
27095911Pglq15_mpelvic girdle length QTL 15, 16 week (mouse)1039175996129635869Mouse
1301737Insq9_minsulin QTL 9 (mouse)Not determined106549093899491121Mouse
1300975Fembrs3_mfemur breaking strength 3 (mouse)Not determined1075338568109338767Mouse
4142272W10q5_mweight 10 weeks QTL 5 (mouse)Not determined1270405184079784Mouse

Markers in Region
RH135904  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381083,040,818 - 83,041,016UniSTSGRCm38
MGSCv371082,503,563 - 82,503,761UniSTSGRCm37
Celera1085,028,200 - 85,028,398UniSTS
Cytogenetic Map10C1UniSTS
D10Mit160  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381083,183,489 - 83,183,618UniSTSGRCm38
MGSCv371082,646,234 - 82,646,363UniSTSGRCm37
Celera1085,171,491 - 85,171,620UniSTS
Cytogenetic Map10C1UniSTS
cM Map1047.0UniSTS
Whitehead Genetic1042.6UniSTS
Whitehead_YAC10 UniSTS
D10Mit227  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381083,107,360 - 83,107,473UniSTSGRCm38
MGSCv371082,570,105 - 82,570,218UniSTSGRCm37
Celera1085,095,071 - 85,095,184UniSTS
Cytogenetic Map10C1UniSTS
cM Map1047.0UniSTS
Whitehead Genetic1042.6UniSTS
Whitehead_YAC10 UniSTS
Chst11  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381083,191,561 - 83,191,701UniSTSGRCm38
Celera1085,179,564 - 85,179,704UniSTS
Cytogenetic Map10C1UniSTS
cM Map10 UniSTS
Chst11  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map10C1UniSTS
cM Map10 UniSTS


Sequence


Ensembl Acc Id: ENSMUST00000040110   ⟹   ENSMUSP00000045349
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1082,821,332 - 83,031,734 (+)Ensembl
GRCm38.p6 Ensembl1082,985,498 - 83,195,900 (+)Ensembl
RefSeq Acc Id: NM_021439   ⟹   NP_067414
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391082,821,331 - 83,031,734 (+)NCBI
GRCm381082,985,497 - 83,195,900 (+)NCBI
MGSCv371082,448,242 - 82,658,645 (+)RGD
Celera1084,972,909 - 85,183,903 (+)RGD
cM Map10 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006513908   ⟹   XP_006513971
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391082,869,274 - 83,031,738 (+)NCBI
GRCm381083,033,426 - 83,195,904 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006513909   ⟹   XP_006513972
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391082,820,274 - 83,031,738 (+)NCBI
GRCm381082,984,440 - 83,195,904 (+)NCBI
Sequence:
RefSeq Acc Id: NP_067414   ⟸   NM_021439
- UniProtKB: Q9JJS2 (UniProtKB/Swiss-Prot),   Q9JME2 (UniProtKB/Swiss-Prot),   B9EHC3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006513972   ⟸   XM_006513909
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_006513971   ⟸   XM_006513908
- Peptide Label: isoform X1
- Sequence:
Ensembl Acc Id: ENSMUSP00000045349   ⟸   ENSMUST00000040110

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9JME2-F1-model_v2 AlphaFold Q9JME2 1-352 view protein structure

Promoters
RGD ID:6819110
Promoter ID:MM_KWN:5112
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Lung,   MEF_B4,   MEF_B6
Transcripts:OTTMUST00000068883
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361082,447,776 - 82,448,677 (+)MPROMDB
RGD ID:8672872
Promoter ID:EPDNEW_M14467
Type:initiation region
Name:Chst11_1
Description:Mus musculus carbohydrate sulfotransferase 11 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381082,985,486 - 82,985,546EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1927166 AgrOrtholog
Ensembl Genes ENSMUSG00000034612 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000040110 ENTREZGENE
  ENSMUST00000040110.8 UniProtKB/Swiss-Prot
InterPro Carb_sulfotrans_8-10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Sulfotransferase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:58250 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:1927166 ENTREZGENE
NCBI Gene 58250 ENTREZGENE
PANTHER CARBOHYDRATE SULFOTRANSFERASE 11 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR12137 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Sulfotransfer_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Chst11 PhenoGen
UniProt B7ZMT9 ENTREZGENE, UniProtKB/TrEMBL
  B9EHC3 ENTREZGENE, UniProtKB/TrEMBL
  CHSTB_MOUSE UniProtKB/Swiss-Prot
  Q9JJS2 ENTREZGENE
  Q9JME2 ENTREZGENE
UniProt Secondary Q9JJS2 UniProtKB/Swiss-Prot