Ssr2 (signal sequence receptor, beta) - Rat Genome Database

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Gene: Ssr2 (signal sequence receptor, beta) Mus musculus
Analyze
Symbol: Ssr2
Name: signal sequence receptor, beta
RGD ID: 1318092
MGI Page MGI
Description: Acts upstream of or within in utero embryonic development. Predicted to be located in endoplasmic reticulum and membrane. Is expressed in cranium; genitourinary system; and pancreas epithelium. Orthologous to human SSR2 (signal sequence receptor subunit 2).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 1500032E05Rik; AI315033; AU020133; signal sequence receptor subunit beta; SSR-beta; TLAP; translocon-associated protein subunit beta; TRAP; TRAP-beta; TRAPB; TRAPbeta
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39388,486,915 - 88,495,727 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl388,483,183 - 88,495,726 (+)EnsemblGRCm39 Ensembl
GRCm38388,579,608 - 88,588,420 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl388,575,876 - 88,588,419 (+)EnsemblGRCm38mm10GRCm38
MGSCv37388,383,593 - 88,392,335 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36388,665,598 - 88,674,340 (+)NCBIMGSCv36mm8
Celera388,619,460 - 88,628,470 (+)NCBICelera
Cytogenetic Map3F1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
abnormal atrioventricular septum morphology  (IEA)
abnormal diaphragm morphology  (IEA)
abnormal digastric muscle morphology  (IEA)
abnormal ductus venosus valve morphology  (IEA)
abnormal eye muscle morphology  (IEA)
abnormal forebrain morphology  (IAGP)
abnormal hepatic vein connection  (IEA)
abnormal hyoid bone greater horn morphology  (IEA)
abnormal hypoglossal nerve topology  (IEA)
abnormal inferior vena cava valve morphology  (IEA)
abnormal infrahyoid muscle connection  (IEA)
abnormal interatrial septum morphology  (IEA)
abnormal optic chiasm morphology  (IEA)
abnormal optic cup morphology  (IEA)
abnormal optic nerve morphology  (IEA)
abnormal optic stalk morphology  (IEA)
abnormal placental labyrinth vasculature morphology  (IAGP)
abnormal pulmonary valve cusp morphology  (IEA)
abnormal thymus morphology  (IEA)
abnormal Wolffian duct morphology  (IEA)
absent ductus venosus valve  (IEA)
basisphenoid bone foramen  (IEA)
common truncal valve  (IEA)
dilated lateral ventricle  (IEA)
dilated liver sinusoidal space  (IEA)
double outlet right ventricle  (IEA)
enlarged third ventricle  (IEA)
fetal growth retardation  (IEA)
fusion of vertebral arches  (IEA)
hemopericardium  (IEA)
heterochrony  (IEA)
increased trigeminal neuroma incidence  (IEA)
interrupted aortic arch, type b  (IEA)
intracerebral hemorrhage  (IEA)
muscular ventricular septal defect  (IEA)
perimembraneous ventricular septal defect  (IAGP)
persistent truncus arteriosis  (IEA)
preweaning lethality, complete penetrance  (IAGP)
reduced sympathetic cervical ganglion size  (IEA)
scoliosis  (IEA)
small superior cervical ganglion  (IEA)
subcutaneous edema  (IEA)
thin myocardium compact layer  (IEA)
References

References - curated
# Reference Title Reference Citation
1. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2. Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Ko MS, etal., Development 2000 Apr;127(8):1737-49.
3. MGDs mouse GO annotations MGD data from the GO Consortium
4. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
5. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
6. Mouse MP Annotation Import Pipeline RGD automated import pipeline
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:12477932   PMID:12520002   PMID:12904583   PMID:14595844   PMID:14610273   PMID:15489334   PMID:15782199  
PMID:16141072   PMID:16141073   PMID:16170054   PMID:16602821   PMID:17540781   PMID:17967808   PMID:18287559   PMID:18554416   PMID:18644895   PMID:18799693   PMID:21267068   PMID:21677750  
PMID:21873635   PMID:27996060   PMID:28185240   PMID:29539633   PMID:32554809   PMID:33505018   PMID:36859534  


Genomics

Comparative Map Data
Ssr2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39388,486,915 - 88,495,727 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl388,483,183 - 88,495,726 (+)EnsemblGRCm39 Ensembl
GRCm38388,579,608 - 88,588,420 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl388,575,876 - 88,588,419 (+)EnsemblGRCm38mm10GRCm38
MGSCv37388,383,593 - 88,392,335 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36388,665,598 - 88,674,340 (+)NCBIMGSCv36mm8
Celera388,619,460 - 88,628,470 (+)NCBICelera
Cytogenetic Map3F1NCBI
SSR2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381156,009,048 - 156,020,951 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl1156,009,048 - 156,020,951 (-)EnsemblGRCh38hg38GRCh38
GRCh371155,978,839 - 155,990,742 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361154,245,463 - 154,257,382 (-)NCBINCBI36Build 36hg18NCBI36
Build 341152,791,912 - 152,803,800NCBI
Celera1129,051,733 - 129,062,855 (-)NCBICelera
Cytogenetic Map1q22NCBI
HuRef1127,340,483 - 127,353,288 (-)NCBIHuRef
CHM1_11157,374,969 - 157,386,857 (-)NCBICHM1_1
T2T-CHM13v2.01155,147,508 - 155,159,414 (-)NCBIT2T-CHM13v2.0
Ssr2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.22174,048,291 - 174,057,043 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2174,048,460 - 174,057,042 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2181,194,310 - 181,202,924 (+)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.02179,216,672 - 179,225,286 (+)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.02173,816,822 - 173,825,548 (+)NCBIRnor_WKY
Rnor_6.02187,951,316 - 187,960,067 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2187,951,344 - 187,960,063 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02207,354,107 - 207,362,738 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42180,705,121 - 180,713,872 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12180,655,227 - 180,663,976 (+)NCBI
Celera2167,992,723 - 168,001,460 (+)NCBICelera
Cytogenetic Map2q34NCBI
Ssr2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555452,205,906 - 2,212,851 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555452,205,906 - 2,213,780 (-)NCBIChiLan1.0ChiLan1.0
SSR2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1193,559,366 - 93,571,348 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01131,349,072 - 131,361,008 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11135,179,067 - 135,190,965 (-)NCBIpanpan1.1PanPan1.1panPan2
SSR2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1741,790,289 - 41,801,438 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl741,795,565 - 41,801,421 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha741,284,537 - 41,290,952 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0741,656,990 - 41,668,191 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl741,662,314 - 41,668,174 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1741,442,596 - 41,449,006 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0741,496,229 - 41,502,635 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0741,780,416 - 41,786,822 (+)NCBIUU_Cfam_GSD_1.0
Ssr2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505826,240,029 - 26,247,058 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365805,270,384 - 5,276,732 (-)EnsemblSpeTri2.0
SpeTri2.0NW_0049365805,270,411 - 5,277,435 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SSR2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl494,011,527 - 94,021,962 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1494,010,724 - 94,021,964 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24102,753,723 - 102,764,968 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SSR2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1207,844,461 - 7,856,869 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl207,844,430 - 7,856,999 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660387,143,387 - 7,155,692 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ssr2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248851,364,563 - 1,372,466 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248851,365,651 - 1,372,778 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Ssr2
305 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:199
Count of miRNA genes:183
Interacting mature miRNAs:189
Transcripts:ENSMUST00000035785
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
26884436Zlq3_mzygomatic length QTL 3, 10 week (mouse)33265060142405761Mouse
4142399Aec1_mautoimmune exocrinopathy 1 (mouse)Not determined7586174102690034Mouse
26884427Cvht4_mcranial vault height 4, 10 week (mouse)316054164109707316Mouse
13207570Tcq12_mtotal cholesterol QTL 12 (mouse)316504164130163649Mouse
26884422Cvht7_mcranial vault height 7, 16 week (mouse)328954149118893649Mouse
1302056Orgwq4_morgan weight QTL 4 (mouse)Not determined330067588147304689Mouse
1301705Sles3_msystemic lupus erythmatosus suppressor 3 (mouse)Not determined337174862143353183Mouse
13208566Bmiq5_mbody mass index QTL 5 (mouse)340954435115793649Mouse
26884380Skwq1_mskull length QTL 1, 5 week (mouse)343954435101607316Mouse
26884378Skwq6_mskull length QTL 6, 10 week (mouse)351907421102307316Mouse
26884382Bzwq1_mbi-zygomatic width QTL 1, 5 week (mouse)352207421137205761Mouse
11039519Ltpr3_mLeishmania tropica response 3 (mouse)356704102100464137Mouse
12880419V125Dq4_mvitamin D active form serum level QTL 4 (mouse)35890730792907307Mouse
4141294Bmd24_mbone mineral density 24 (mouse)Not determined36174006195740241Mouse
1301971Cia5_mcollagen induced arthritis QTL 5 (mouse)Not determined366046658100046795Mouse
25314313Syncl1_msynaptonemal complex length 1 (mouse)367907333128393649Mouse
11251721Ewc3_methanol withdrawal and consumption 3 (mouse)369568554103568554Mouse
1301791Char4_mP. chabaudi malaria resistance QTL 4 (mouse)Not determined369625509100655290Mouse
1301422Sle11_msystematic lupus erythematosus susceptibility 11 (mouse)Not determined370208904104209042Mouse
11049572Lmr11c_mleishmaniasis resistance 11c (mouse)372139967106140094Mouse
1300982Lmr11_mleishmaniasis resistance 11 (mouse)Not determined372139967106140094Mouse
1300595Tmevd2_mTheiler's murine encephalomyelitis virus induced demyelinating disease susceptibility 2 (mouse)Not determined375463302109463549Mouse
1301392Eae3_msusceptibility to experimental allergic encephalomyelitis 3 (mouse)Not determined379548730113548837Mouse
1301947Pcfm3_mperiosteal circumference and femur length 3 (mouse)Not determined381084652115084797Mouse
1301904Iba2_minduction of brown adipocytes 2 (mouse)Not determined382147043116147184Mouse
11041900Lmr11a_mleishmaniasis resistance 11a (mouse)383463991117464137Mouse
11039510Ltpr3d_mLeishmania tropica response 3d (mouse)383463991117464137Mouse
11039511Ltpr3c_mLeishmania tropica response 3c (mouse)383463991117464137Mouse
11039507Ltpr3g_mLeishmania tropica response 3g (mouse)383463991117464137Mouse
11039508Ltpr3f_mLeishmania tropica response 3f (mouse)383463991117464137Mouse
11039509Ltpr3e_mLeishmania tropica response 3e (mouse)383463991117464137Mouse
11039512Ltpr3b_mLeishmania tropica response 3b (mouse)383463991117464137Mouse
1301272Cfsw1_mcystic fibrosis survival to weaning 1 (mouse)Not determined383882912117883044Mouse
4142099Cq3_mcholesterol QTL 3 (mouse)Not determined384888918118889067Mouse
14746984Manh54_mmandible shape 54 (mouse)385289152119289152Mouse
10043981Cia5a_mcollagen induced arthritis QTL 5a (mouse)Not determined38717045489140094Mouse
1357583Sle18_msystematic lupus erythematosus susceptibility 18 (mouse)Not determined387208904125316236Mouse
12738440Twq3_mtestis weight QTL 3 (mouse)387228015121228015Mouse

Markers in Region
RH136365  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38388,588,159 - 88,588,359UniSTSGRCm38
MGSCv37388,392,081 - 88,392,281UniSTSGRCm37
Celera388,628,216 - 88,628,416UniSTS
Cytogenetic Map3F1UniSTS
AI315033  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38388,588,093 - 88,588,359UniSTSGRCm38
MGSCv37388,392,015 - 88,392,281UniSTSGRCm37
Celera388,628,150 - 88,628,416UniSTS
Cytogenetic Map3F1UniSTS
Whitehead/MRC_RH3885.84UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001356316 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001356317 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001356318 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001356319 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_025448 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC145168 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK005340 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK007538 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK007720 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK010565 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK012281 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK020145 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK050505 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK084530 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK185121 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK213548 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK214352 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK217251 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC010214 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466547 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000035785   ⟹   ENSMUSP00000045456
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl388,486,978 - 88,495,726 (+)Ensembl
GRCm38.p6 Ensembl388,579,671 - 88,588,419 (+)Ensembl
RefSeq Acc Id: ENSMUST00000192495   ⟹   ENSMUSP00000141922
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl388,486,974 - 88,495,340 (+)Ensembl
GRCm38.p6 Ensembl388,579,667 - 88,588,033 (+)Ensembl
RefSeq Acc Id: ENSMUST00000192688   ⟹   ENSMUSP00000141471
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl388,483,183 - 88,491,180 (+)Ensembl
GRCm38.p6 Ensembl388,575,876 - 88,583,873 (+)Ensembl
RefSeq Acc Id: ENSMUST00000193069   ⟹   ENSMUSP00000141389
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl388,483,246 - 88,487,290 (+)Ensembl
GRCm38.p6 Ensembl388,575,939 - 88,579,983 (+)Ensembl
RefSeq Acc Id: ENSMUST00000193934   ⟹   ENSMUSP00000141325
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl388,486,948 - 88,495,326 (+)Ensembl
GRCm38.p6 Ensembl388,579,641 - 88,588,019 (+)Ensembl
RefSeq Acc Id: ENSMUST00000194604   ⟹   ENSMUSP00000141591
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl388,483,256 - 88,487,283 (+)Ensembl
GRCm38.p6 Ensembl388,575,949 - 88,579,976 (+)Ensembl
RefSeq Acc Id: ENSMUST00000195014   ⟹   ENSMUSP00000141441
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl388,486,915 - 88,495,726 (+)Ensembl
GRCm38.p6 Ensembl388,579,608 - 88,588,419 (+)Ensembl
RefSeq Acc Id: NM_001356316   ⟹   NP_001343245
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39388,486,915 - 88,495,727 (+)NCBI
GRCm38388,579,608 - 88,588,420 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001356317   ⟹   NP_001343246
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39388,486,915 - 88,495,727 (+)NCBI
GRCm38388,579,608 - 88,588,420 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001356318   ⟹   NP_001343247
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39388,486,915 - 88,495,727 (+)NCBI
GRCm38388,579,608 - 88,588,420 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001356319   ⟹   NP_001343248
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39388,486,915 - 88,495,727 (+)NCBI
GRCm38388,579,608 - 88,588,420 (+)NCBI
Sequence:
RefSeq Acc Id: NM_025448   ⟹   NP_079724
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39388,486,915 - 88,495,727 (+)NCBI
GRCm38388,579,608 - 88,588,420 (+)NCBI
MGSCv37388,383,593 - 88,392,335 (+)RGD
Celera388,619,460 - 88,628,470 (+)RGD
cM Map3 ENTREZGENE
Sequence:
Reference Sequences
RefSeq Acc Id: NP_079724   ⟸   NM_025448
- Peptide Label: isoform 2 precursor
- UniProtKB: Q9CX54 (UniProtKB/Swiss-Prot),   Q9CPW5 (UniProtKB/Swiss-Prot),   A0A6P5P9C5 (UniProtKB/TrEMBL),   A0A8C6N4A2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001343246   ⟸   NM_001356317
- Peptide Label: isoform 2 precursor
- UniProtKB: Q9CX54 (UniProtKB/Swiss-Prot),   A0A6P5P9C5 (UniProtKB/TrEMBL),   A0A8C6N4A2 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001343247   ⟸   NM_001356318
- Peptide Label: isoform 3 precursor
RefSeq Acc Id: NP_001343245   ⟸   NM_001356316
- Peptide Label: isoform 1 precursor
- UniProtKB: A0A0A6YXB7 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001343248   ⟸   NM_001356319
- Peptide Label: isoform 4 precursor
- UniProtKB: A0A0A6YVZ1 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSMUSP00000141325   ⟸   ENSMUST00000193934
RefSeq Acc Id: ENSMUSP00000141389   ⟸   ENSMUST00000193069
RefSeq Acc Id: ENSMUSP00000141922   ⟸   ENSMUST00000192495
RefSeq Acc Id: ENSMUSP00000045456   ⟸   ENSMUST00000035785
RefSeq Acc Id: ENSMUSP00000141471   ⟸   ENSMUST00000192688
RefSeq Acc Id: ENSMUSP00000141441   ⟸   ENSMUST00000195014
RefSeq Acc Id: ENSMUSP00000141591   ⟸   ENSMUST00000194604

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9CPW5-F1-model_v2 AlphaFold Q9CPW5 1-183 view protein structure

Promoters
RGD ID:6834498
Promoter ID:MM_KWN:34868
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:NM_025448,   UC008PVS.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36388,382,786 - 88,383,677 (+)MPROMDB
RGD ID:6881166
Promoter ID:EPDNEW_M4032
Type:initiation region
Name:Ssr2_1
Description:Mus musculus signal sequence receptor, beta , transcript variant3, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38388,579,641 - 88,579,701EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1913506 AgrOrtholog
Ensembl Genes ENSMUSG00000041355 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000045456 ENTREZGENE
  ENSMUSP00000045456.8 UniProtKB/Swiss-Prot
  ENSMUSP00000141325 ENTREZGENE
  ENSMUSP00000141325.2 UniProtKB/TrEMBL
  ENSMUSP00000141389.2 UniProtKB/TrEMBL
  ENSMUSP00000141441 ENTREZGENE
  ENSMUSP00000141441.2 UniProtKB/Swiss-Prot
  ENSMUSP00000141471.2 UniProtKB/TrEMBL
  ENSMUSP00000141591.2 UniProtKB/TrEMBL
  ENSMUSP00000141922 ENTREZGENE
  ENSMUSP00000141922.2 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000035785 ENTREZGENE
  ENSMUST00000035785.9 UniProtKB/Swiss-Prot
  ENSMUST00000192495 ENTREZGENE
  ENSMUST00000192495.6 UniProtKB/TrEMBL
  ENSMUST00000192688.6 UniProtKB/TrEMBL
  ENSMUST00000193069.2 UniProtKB/TrEMBL
  ENSMUST00000193934 ENTREZGENE
  ENSMUST00000193934.6 UniProtKB/TrEMBL
  ENSMUST00000194604.2 UniProtKB/TrEMBL
  ENSMUST00000195014 ENTREZGENE
  ENSMUST00000195014.6 UniProtKB/Swiss-Prot
InterPro TRAP_beta UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:66256 UniProtKB/Swiss-Prot
MGD MGI:1913506 ENTREZGENE
NCBI Gene 66256 ENTREZGENE
PANTHER TRANSLOCON-ASSOCIATED PROTEIN SUBUNIT BETA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TRANSLOCON-ASSOCIATED PROTEIN, BETA SUBUNIT PRECURSOR TRAP-BETA SIGNAL SEQUENCE RECEPTOR BETA SUBUNIT UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam TRAP_beta UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Ssr2 PhenoGen
PIRSF TRAP_beta UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0A6YVZ1 ENTREZGENE, UniProtKB/TrEMBL
  A0A0A6YW45_MOUSE UniProtKB/TrEMBL
  A0A0A6YWA8_MOUSE UniProtKB/TrEMBL
  A0A0A6YWL0_MOUSE UniProtKB/TrEMBL
  A0A0A6YXB7 ENTREZGENE, UniProtKB/TrEMBL
  A0A6P5P9C5 ENTREZGENE
  A0A8C6N4A2 ENTREZGENE
  Q9CPW5 ENTREZGENE
  Q9CX54 ENTREZGENE
  SSRB_MOUSE UniProtKB/Swiss-Prot
UniProt Secondary Q91Z43 UniProtKB/Swiss-Prot
  Q9CR94 UniProtKB/Swiss-Prot
  Q9CX54 UniProtKB/Swiss-Prot